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Julian Mintseris


Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Gassaway BM, Li J, Rad R, Mintseris J, Mohler K, Levy T, Aguiar M, Beausoleil SA, Paulo JA, Rinehart J, Huttlin EL, Gygi SP. A multi-purpose, regenerable, proteome-scale, human phosphoserine resource for phosphoproteomics. Nat Methods. 2022 11; 19(11):1371-1375. PMID: 36280721; PMCID: PMC9847208.
    Citations:    Fields:    Translation:HumansCells
  2. Hollingsworth LR, Sharif H, Griswold AR, Fontana P, Mintseris J, Dagbay KB, Paulo JA, Gygi SP, Bachovchin DA, Wu H. DPP9 sequesters the C terminus of NLRP1 to repress inflammasome activation. Nature. 2021 04; 592(7856):778-783. PMID: 33731932; PMCID: PMC8299537.
    Citations: 21     Fields:    Translation:HumansCells
  3. Rad R, Li J, Mintseris J, O'Connell J, Gygi SP, Schweppe DK. Improved Monoisotopic Mass Estimation for Deeper Proteome Coverage. J Proteome Res. 2021 01 01; 20(1):591-598. PMID: 33190505.
    Citations: 6     Fields:    
  4. Hauseman ZJ, Harvey EP, Newman CE, Wales TE, Bucci JC, Mintseris J, Schweppe DK, David L, Fan L, Cohen DT, Herce HD, Mourtada R, Ben-Nun Y, Bloch NB, Hansen SB, Wu H, Gygi SP, Engen JR, Walensky LD. Homogeneous Oligomers of Pro-apoptotic BAX Reveal Structural Determinants of Mitochondrial Membrane Permeabilization. Mol Cell. 2020 07 02; 79(1):68-83.e7. PMID: 32533918.
    Citations: 9     Fields:    Translation:HumansAnimalsCells
  5. Mintseris J, Gygi SP. High-density chemical cross-linking for modeling protein interactions. Proc Natl Acad Sci U S A. 2020 01 07; 117(1):93-102. PMID: 31848235; PMCID: PMC6955236.
    Citations: 15     Fields:    Translation:AnimalsCells
  6. Erickson BK, Mintseris J, Schweppe DK, Navarrete-Perea J, Erickson AR, Nusinow DP, Paulo JA, Gygi SP. Active Instrument Engagement Combined with a Real-Time Database Search for Improved Performance of Sample Multiplexing Workflows. J Proteome Res. 2019 03 01; 18(3):1299-1306. PMID: 30658528; PMCID: PMC7081948.
    Citations: 44     Fields:    Translation:Humans
  7. Huttlin EL, Ting L, Bruckner RJ, Gebreab F, Gygi MP, Szpyt J, Tam S, Zarraga G, Colby G, Baltier K, Dong R, Guarani V, Vaites LP, Ordureau A, Rad R, Erickson BK, Wühr M, Chick J, Zhai B, Kolippakkam D, Mintseris J, Obar RA, Harris T, Artavanis-Tsakonas S, Sowa ME, De Camilli P, Paulo JA, Harper JW, Gygi SP. The BioPlex Network: A Systematic Exploration of the Human Interactome. Cell. 2015 Jul 16; 162(2):425-440. PMID: 26186194; PMCID: PMC4617211.
    Citations: 613     Fields:    Translation:Humans
  8. Rhee DY, Cho DY, Zhai B, Slattery M, Ma L, Mintseris J, Wong CY, White KP, Celniker SE, Przytycka TM, Gygi SP, Obar RA, Artavanis-Tsakonas S. Transcription factor networks in Drosophila melanogaster. Cell Rep. 2014 Sep 25; 8(6):2031-2043. PMID: 25242320.
    Citations: 44     Fields:    Translation:Animals
  9. Guruharsha KG, Obar RA, Mintseris J, Aishwarya K, Krishnan RT, Vijayraghavan K, Artavanis-Tsakonas S. Drosophila protein interaction map (DPiM): a paradigm for metazoan protein complex interactions. Fly (Austin). 2012 Oct-Dec; 6(4):246-53. PMID: 23222005.
    Citations: 11     Fields:    Translation:AnimalsCells
  10. Burns KE, McAllister FE, Schwerdtfeger C, Mintseris J, Cerda-Maira F, Noens EE, Wilmanns M, Hubbard SR, Melandri F, Ovaa H, Gygi SP, Darwin KH. Mycobacterium tuberculosis prokaryotic ubiquitin-like protein-deconjugating enzyme is an unusual aspartate amidase. J Biol Chem. 2012 Oct 26; 287(44):37522-9. PMID: 22942282.
    Citations: 12     Fields:    Translation:Cells
  11. Guruharsha KG, Rual JF, Zhai B, Mintseris J, Vaidya P, Vaidya N, Beekman C, Wong C, Rhee DY, Cenaj O, McKillip E, Shah S, Stapleton M, Wan KH, Yu C, Parsa B, Carlson JW, Chen X, Kapadia B, VijayRaghavan K, Gygi SP, Celniker SE, Obar RA, Artavanis-Tsakonas S. A protein complex network of Drosophila melanogaster. Cell. 2011 Oct 28; 147(3):690-703. PMID: 22036573.
    Citations: 309     Fields:    Translation:Animals
  12. Braun CR, Mintseris J, Gavathiotis E, Bird GH, Gygi SP, Walensky LD. Photoreactive stapled BH3 peptides to dissect the BCL-2 family interactome. Chem Biol. 2010 Dec 22; 17(12):1325-33. PMID: 21168768.
    Citations: 20     Fields:    Translation:HumansCells
  13. Festa RA, McAllister F, Pearce MJ, Mintseris J, Burns KE, Gygi SP, Darwin KH. Prokaryotic ubiquitin-like protein (Pup) proteome of Mycobacterium tuberculosis [corrected] . PLoS One. 2010 Jan 06; 5(1):e8589. PMID: 20066036.
    Citations: 70     Fields:    Translation:Cells
  14. Hwang H, Pierce B, Mintseris J, Janin J, Weng Z. Protein-protein docking benchmark version 3.0. Proteins. 2008 Nov 15; 73(3):705-9. PMID: 18491384.
    Citations: 104     Fields:    Translation:Animals
  15. Pearce MJ, Mintseris J, Ferreyra J, Gygi SP, Darwin KH. Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis. Science. 2008 Nov 14; 322(5904):1104-7. PMID: 18832610.
    Citations: 188     Fields:    Translation:Cells
  16. Zhai B, Villén J, Beausoleil SA, Mintseris J, Gygi SP. Phosphoproteome analysis of Drosophila melanogaster embryos. J Proteome Res. 2008 Apr; 7(4):1675-82. PMID: 18327897.
    Citations: 129     Fields:    Translation:AnimalsCells
  17. Wiehe K, Peterson MW, Pierce B, Mintseris J, Weng Z. Protein-protein docking: overview and performance analysis. Methods Mol Biol. 2008; 413:283-314. PMID: 18075170.
    Citations: 9     Fields:    Translation:HumansAnimalsCells
  18. Wiehe K, Pierce B, Tong WW, Hwang H, Mintseris J, Weng Z. The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI. Proteins. 2007 Dec 01; 69(4):719-25. PMID: 17803212.
    Citations: 36     Fields:    Translation:Cells
  19. Mintseris J, Pierce B, Wiehe K, Anderson R, Chen R, Weng Z. Integrating statistical pair potentials into protein complex prediction. Proteins. 2007 Nov 15; 69(3):511-20. PMID: 17623839.
    Citations: 128     Fields:    Translation:Cells
  20. Lukatsky DB, Shakhnovich BE, Mintseris J, Shakhnovich EI. Structural similarity enhances interaction propensity of proteins. J Mol Biol. 2007 Feb 02; 365(5):1596-606. PMID: 17141268; PMCID: PMC2735088.
    Citations: 53     Fields:    Translation:Cells
  21. Mintseris J, Eisen MB. Design of a combinatorial DNA microarray for protein-DNA interaction studies. BMC Bioinformatics. 2006 Oct 03; 7:429. PMID: 17018151; PMCID: PMC1635571.
    Citations: 16     Fields:    Translation:Cells
  22. Wiehe K, Pierce B, Mintseris J, Tong WW, Anderson R, Chen R, Weng Z. ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5. Proteins. 2005 Aug 01; 60(2):207-13. PMID: 15981263.
    Citations: 40     Fields:    Translation:HumansAnimalsCells
  23. Mintseris J, Wiehe K, Pierce B, Anderson R, Chen R, Janin J, Weng Z. Protein-Protein Docking Benchmark 2.0: an update. Proteins. 2005 Aug 01; 60(2):214-6. PMID: 15981264.
    Citations: 107     Fields:    Translation:HumansAnimalsCells
  24. Mintseris J, Weng Z. Structure, function, and evolution of transient and obligate protein-protein interactions. Proc Natl Acad Sci U S A. 2005 Aug 02; 102(31):10930-5. PMID: 16043700; PMCID: PMC1182425.
    Citations: 139     Fields:    Translation:HumansAnimalsCells
  25. Caffrey DR, Somaroo S, Hughes JD, Mintseris J, Huang ES. Are protein-protein interfaces more conserved in sequence than the rest of the protein surface? Protein Sci. 2004 Jan; 13(1):190-202. PMID: 14691234; PMCID: PMC2286531.
    Citations: 127     Fields:    Translation:Cells
  26. Mintseris J, Weng Z. Optimizing protein representations with information theory. Genome Inform. 2004; 15(1):160-9. PMID: 15712119.
    Citations: 8     Fields:    Translation:Cells
  27. Mintseris J, Weng Z. Atomic contact vectors in protein-protein recognition. Proteins. 2003 Nov 15; 53(3):629-39. PMID: 14579354.
    Citations: 39     Fields:    Translation:Cells
  28. Chen R, Mintseris J, Janin J, Weng Z. A protein-protein docking benchmark. Proteins. 2003 Jul 01; 52(1):88-91. PMID: 12784372.
    Citations: 79     Fields:    Translation:Cells
  29. Chen R, Tong W, Mintseris J, Li L, Weng Z. ZDOCK predictions for the CAPRI challenge. Proteins. 2003 Jul 01; 52(1):68-73. PMID: 12784369.
    Citations: 36     Fields:    Translation:AnimalsCells
  30. Mellor JC, Yanai I, Clodfelter KH, Mintseris J, DeLisi C. Predictome: a database of putative functional links between proteins. Nucleic Acids Res. 2002 Jan 01; 30(1):306-9. PMID: 11752322; PMCID: PMC99135.
    Citations: 57     Fields:    Translation:Animals
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.