Harvard Catalyst Profiles

Contact, publication, and social network information about Harvard faculty and fellows.

Guergana Kirilova Savova, Ph.D.

Title
Institution
Department
Address
Phone
Fax

Research
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. U24CA248010 (SAVOVA, GUERGANA K.) Sep 24, 2020 - Aug 31, 2025
    NIH
    Cancer Deep Phenotype Extraction from Electronic Medical Records
    Role: Principal Investigator
  2. UG3CA243120 (SAVOVA, GUERGANA K.) Jul 19, 2019 - Jun 30, 2021
    NIH
    Natural Language Processing Platform for Cancer Surveillance
    Role: Principal Investigator
  3. R01GM114355 (ELHADAD, NOEMIE) Jan 1, 2016 - Dec 31, 2020
    NIH
    Extended Methods and Software Development for Health NLP
    Role: Co-Principal Investigator
  4. U24CA184407 (SAVOVA, GUERGANA K.) May 6, 2014 - Jul 31, 2017
    NIH
    Cancer Deep Phenotype Extraction from Electronic Medical Records
    Role: Co-Principal Investigator
  5. R01LM010090 (SAVOVA, GUERGANA K.) Sep 30, 2010 - Sep 29, 2018
    NIH
    Temporal relation discovery for clinical text
    Role: Co-Principal Investigator

Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Zhang J, Lai PMR, Can A, Mukundan S, Castro VM, Dligach D, Finan S, Gainer VS, Shadick NA, Savova G, Murphy SN, Cai T, Weiss ST, Du R. Tobacco use and age are associated with different morphologic features of anterior communicating artery aneurysms. Sci Rep. 2021 Feb 26; 11(1):4791. PMID: 33637879.
    Citations:    Fields:    
  2. Bitterman DS, Miller TA, Mak RH, Savova GK. Clinical Natural Language Processing for Radiation Oncology: A Review and Practical Primer. Int J Radiat Oncol Biol Phys. 2021 Feb 03. PMID: 33545300.
    Citations:    Fields:    
  3. Zhang J, Can A, Lai PMR, Mukundan S, Castro VM, Dligach D, Finan S, Gainer VS, Shadick NA, Savova G, Murphy SN, Cai T, Weiss ST, Du R. Morphological variables associated with ruptured basilar tip aneurysms. Sci Rep. 2021 Jan 28; 11(1):2526. PMID: 33510194.
    Citations:    Fields:    
  4. Zhang J, Can A, Lai PMR, Mukundan S, Castro VM, Dligach D, Finan S, Gainer V, Shadick N, Savova G, Murphy SN, Cai T, Weiss ST, Du R. Geometric variations associated with posterior communicating artery aneurysms. J Neurointerv Surg. 2021 Jan 21. PMID: 33479035.
    Citations:    Fields:    
  5. Zhang J, Can A, Lai PMR, Mukundan S, Castro VM, Dligach D, Finan S, Gainer VS, Shadick NA, Savova G, Murphy SN, Cai T, Weiss ST, Du R. Vascular Geometry Associated with Anterior Communicating Artery Aneurysm Formation. World Neurosurg. 2021 Feb; 146:e1318-e1325. PMID: 33307259.
    Citations: 2     Fields:    
  6. Zhang J, Can A, Lai PMR, Mukundan S, Castro VM, Dligach D, Finan S, Gainer VS, Shadick NA, Savova G, Murphy SN, Cai T, Weiss ST, Du R. Surrounding vascular geometry associated with basilar tip aneurysm formation. Sci Rep. 2020 10 21; 10(1):17928. PMID: 33087795.
    Citations: 1     Fields:    
  7. Geva A, Stedman JP, Manzi SF, Lin C, Savova GK, Avillach P, Mandl KD. Adverse drug event presentation and tracking (ADEPT): semiautomated, high throughput pharmacovigilance using real-world data. JAMIA Open. 2020 Oct; 3(3):413-421. PMID: 33215076.
    Citations:    
  8. Zhang J, Can A, Lai PMR, Mukundan S, Castro VM, Dligach D, Finan S, Yu S, Gainer VS, Shadick NA, Savova G, Murphy SN, Cai T, Weiss ST, Du R. Age and morphology of posterior communicating artery aneurysms. Sci Rep. 2020 07 14; 10(1):11545. PMID: 32665589.
    Citations: 1     Fields:    Translation:Humans
  9. Li C, Chen E, Savova G, Fraser H, Eickhoff C. Mining Misdiagnosis Patterns from Biomedical Literature. AMIA Jt Summits Transl Sci Proc. 2020; 2020:360-366. PMID: 32477656.
    Citations:    
  10. Yuan Z, Finan S, Warner J, Savova G, Hochheiser H. Interactive Exploration of Longitudinal Cancer Patient Histories Extracted From Clinical Text. JCO Clin Cancer Inform. 2020 05; 4:412-420. PMID: 32383981.
    Citations: 1     Fields:    
  11. Lin C, Bethard S, Dligach D, Sadeque F, Savova G, Miller TA. Does BERT need domain adaptation for clinical negation detection? J Am Med Inform Assoc. 2020 04 01; 27(4):584-591. PMID: 32044989.
    Citations: 2     Fields:    Translation:Humans
  12. Geva A, Abman SH, Manzi SF, Ivy DD, Mullen MP, Griffin J, Lin C, Savova GK, Mandl KD. Adverse drug event rates in pediatric pulmonary hypertension: a comparison of real-world data sources. J Am Med Inform Assoc. 2020 02 01; 27(2):294-300. PMID: 31769835.
    Citations: 1     Fields:    Translation:Humans
  13. Zhang Y, Cai T, Yu S, Cho K, Hong C, Sun J, Huang J, Ho YL, Ananthakrishnan AN, Xia Z, Shaw SY, Gainer V, Castro V, Link N, Honerlaw J, Huang S, Gagnon D, Karlson EW, Plenge RM, Szolovits P, Savova G, Churchill S, O'Donnell C, Murphy SN, Gaziano JM, Kohane I, Cai T, Liao KP. High-throughput phenotyping with electronic medical record data using a common semi-supervised approach (PheCAP). Nat Protoc. 2019 12; 14(12):3426-3444. PMID: 31748751.
    Citations: 11     Fields:    Translation:Humans
  14. Ananthakrishnan AN, Cagan A, Cai T, Gainer VS, Savova G, Shaw SY, Churchill S, Burke KE, Karlson EW, Murphy SN, Kohane I, Liao KP, Xavier RJ. Use of Narrative Concepts in Electronic Health Records to Validate Associations Between Genetic Factors and Response to Treatment of Inflammatory Bowel Diseases. Clin Gastroenterol Hepatol. 2020 Jul; 18(8):1890-1892. PMID: 31404664.
    Citations: 1     Fields:    
  15. Savova GK, Danciu I, Alamudun F, Miller T, Lin C, Bitterman DS, Tourassi G, Warner JL. Use of Natural Language Processing to Extract Clinical Cancer Phenotypes from Electronic Medical Records. Cancer Res. 2019 11 01; 79(21):5463-5470. PMID: 31395609.
    Citations: 8     Fields:    Translation:Humans
  16. Zhang J, Can A, Mukundan S, Steigner M, Castro VM, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Wang Z, Weiss ST, Du R. Morphological Variables Associated With Ruptured Middle Cerebral Artery Aneurysms. Neurosurgery. 2019 07 01; 85(1):75-83. PMID: 29850834.
    Citations: 6     Fields:    Translation:Humans
  17. Viani N, Miller TA, Napolitano C, Priori SG, Savova GK, Bellazzi R, Sacchi L. Supervised methods to extract clinical events from cardiology reports in Italian. J Biomed Inform. 2019 07; 95:103219. PMID: 31150777.
    Citations: 2     Fields:    Translation:Humans
  18. Can A, Lai PMR, Castro VM, Yu S, Dligach D, Finan S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Decreased Total Iron Binding Capacity May Correlate with Ruptured Intracranial Aneurysms. Sci Rep. 2019 04 15; 9(1):6054. PMID: 30988354.
    Citations:    Fields:    Translation:Humans
  19. Nakamura MM, Toomey SL, Zaslavsky AM, Petty CR, Lin C, Savova GK, Rose S, Brittan MS, Lin JL, Bryant MC, Ashrafzadeh S, Schuster MA. Potential Impact of Initial Clinical Data on Adjustment of Pediatric Readmission Rates. Acad Pediatr. 2019 07; 19(5):589-598. PMID: 30470563.
    Citations:    Fields:    Translation:Humans
  20. Can A, Castro VM, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Elevated International Normalized Ratio Is Associated With Ruptured Aneurysms. Stroke. 2018 09; 49(9):2046-2052. PMID: 30354989.
    Citations: 1     Fields:    Translation:Humans
  21. Can A, Rudy RF, Castro VM, Yu S, Dligach D, Finan S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Association between aspirin dose and subarachnoid hemorrhage from saccular aneurysms: A case-control study. Neurology. 2018 09 18; 91(12):e1175-e1181. PMID: 30135253.
    Citations: 4     Fields:    Translation:Humans
  22. Can A, Rudy RF, Castro VM, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Low Serum Calcium and Magnesium Levels and Rupture of Intracranial Aneurysms. Stroke. 2018 07; 49(7):1747-1750. PMID: 29844027.
    Citations: 3     Fields:    Translation:Humans
  23. Can A, Castro VM, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Lipid-Lowering Agents and High HDL (High-Density Lipoprotein) Are Inversely Associated With Intracranial Aneurysm Rupture. Stroke. 2018 05; 49(5):1148-1154. PMID: 29622625.
    Citations: 8     Fields:    Translation:Humans
  24. Névéol A, Dalianis H, Velupillai S, Savova G, Zweigenbaum P. Clinical Natural Language Processing in languages other than English: opportunities and challenges. J Biomed Semantics. 2018 03 30; 9(1):12. PMID: 29602312.
    Citations: 10     Fields:    Translation:Humans
  25. Can A, Castro VM, Yu S, Dligach D, Finan S, Gainer VS, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Antihyperglycemic Agents Are Inversely Associated With Intracranial Aneurysm Rupture. Stroke. 2018 01; 49(1):34-39. PMID: 29203688.
    Citations: 2     Fields:    Translation:Humans
  26. Can A, Castro VM, Ozdemir YH, Dagen S, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Heroin Use Is Associated with Ruptured Saccular Aneurysms. Transl Stroke Res. 2018 08; 9(4):340-346. PMID: 29103103.
    Citations: 3     Fields:    Translation:Humans
  27. Savova GK, Tseytlin E, Finan S, Castine M, Miller T, Medvedeva O, Harris D, Hochheiser H, Lin C, Chavan G, Jacobson RS. DeepPhe: A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records. Cancer Res. 2017 11 01; 77(21):e115-e118. PMID: 29092954.
    Citations: 20     Fields:    Translation:Humans
  28. Gonzalez-Hernandez G, Sarker A, O'Connor K, Savova G. Capturing the Patient's Perspective: a Review of Advances in Natural Language Processing of Health-Related Text. Yearb Med Inform. 2017 Aug; 26(1):214-227. PMID: 29063568.
    Citations: 19     Fields:    Translation:Humans
  29. Kothari C, Wack M, Hassen-Khodja C, Finan S, Savova G, O'Boyle M, Bliss G, Cornell A, Horn EJ, Davis R, Jacobs J, Kohane I, Avillach P. Phelan-McDermid syndrome data network: Integrating patient reported outcomes with clinical notes and curated genetic reports. Am J Med Genet B Neuropsychiatr Genet. 2018 10; 177(7):613-624. PMID: 28862395.
    Citations: 2     Fields:    Translation:HumansCells
  30. Can A, Castro VM, Ozdemir YH, Dagen S, Yu S, Dligach D, Finan S, Gainer V, Shadick NA, Murphy S, Cai T, Savova G, Dammers R, Weiss ST, Du R. Association of intracranial aneurysm rupture with smoking duration, intensity, and cessation. Neurology. 2017 Sep 26; 89(13):1408-1415. PMID: 28855408.
    Citations: 16     Fields:    Translation:Humans
  31. Can A, Castro VM, Ozdemir YH, Dagen S, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Alcohol Consumption and Aneurysmal Subarachnoid Hemorrhage. Transl Stroke Res. 2018 02; 9(1):13-19. PMID: 28752411.
    Citations: 6     Fields:    Translation:Humans
  32. Miller T, Dligach D, Bethard S, Lin C, Savova G. Towards generalizable entity-centric clinical coreference resolution. J Biomed Inform. 2017 05; 69:251-258. PMID: 28438706.
    Citations: 3     Fields:    Translation:Humans
  33. Castro VM, Dligach D, Finan S, Yu S, Can A, Abd-El-Barr M, Gainer V, Shadick NA, Murphy S, Cai T, Savova G, Weiss ST, Du R. Large-scale identification of patients with cerebral aneurysms using natural language processing. Neurology. 2017 Jan 10; 88(2):164-168. PMID: 27927935.
    Citations: 35     Fields:    Translation:Humans
  34. Hochheiser H, Castine M, Harris D, Savova G, Jacobson RS. An information model for computable cancer phenotypes. BMC Med Inform Decis Mak. 2016 09 15; 16(1):121. PMID: 27629872.
    Citations: 13     Fields:    Translation:Humans
  35. Brady CC, Thaker VV, Lingren T, Woo JG, Kennebeck SS, Namjou-Khales B, Roach A, Bickel JP, Patibandla N, Savova GK, Solti I, Holm IA, Harley JB, Kohane IS, Crimmins NA. Suboptimal Clinical Documentation in Young Children with Severe Obesity at Tertiary Care Centers. Int J Pediatr. 2016; 2016:4068582. PMID: 27698673.
    Citations:    
  36. Lingren T, Chen P, Bochenek J, Doshi-Velez F, Manning-Courtney P, Bickel J, Wildenger Welchons L, Reinhold J, Bing N, Ni Y, Barbaresi W, Mentch F, Basford M, Denny J, Vazquez L, Perry C, Namjou B, Qiu H, Connolly J, Abrams D, Holm IA, Cobb BA, Lingren N, Solti I, Hakonarson H, Kohane IS, Harley J, Savova G. Electronic Health Record Based Algorithm to Identify Patients with Autism Spectrum Disorder. PLoS One. 2016; 11(7):e0159621. PMID: 27472449.
    Citations: 19     Fields:    Translation:Humans
  37. Lingren T, Thaker V, Brady C, Namjou B, Kennebeck S, Bickel J, Patibandla N, Ni Y, Van Driest SL, Chen L, Roach A, Cobb B, Kirby J, Denny J, Bailey-Davis L, Williams MS, Marsolo K, Solti I, Holm IA, Harley J, Kohane IS, Savova G, Crimmins N. Developing an Algorithm to Detect Early Childhood Obesity in Two Tertiary Pediatric Medical Centers. Appl Clin Inform. 2016 07 20; 7(3):693-706. PMID: 27452794.
    Citations: 13     Fields:    Translation:Humans
  38. Mowery DL, South BR, Christensen L, Leng J, Peltonen LM, Salanterä S, Suominen H, Martinez D, Velupillai S, Elhadad N, Savova G, Pradhan S, Chapman WW. Normalizing acronyms and abbreviations to aid patient understanding of clinical texts: ShARe/CLEF eHealth Challenge 2013, Task 2. J Biomed Semantics. 2016 Jul 01; 7:43. PMID: 27370271.
    Citations: 3     Fields:    Translation:Humans
  39. Ananthakrishnan AN, Cagan A, Cai T, Gainer VS, Shaw SY, Savova G, Churchill S, Karlson EW, Kohane I, Liao KP, Murphy SN. Comparative Effectiveness of Infliximab and Adalimumab in Crohn's Disease and Ulcerative Colitis. Inflamm Bowel Dis. 2016 Apr; 22(4):880-5. PMID: 26933751.
    Citations: 11     Fields:    Translation:Humans
  40. Kirby JC, Speltz P, Rasmussen LV, Basford M, Gottesman O, Peissig PL, Pacheco JA, Tromp G, Pathak J, Carrell DS, Ellis SB, Lingren T, Thompson WK, Savova G, Haines J, Roden DM, Harris PA, Denny JC. PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. J Am Med Inform Assoc. 2016 11; 23(6):1046-1052. PMID: 27026615.
    Citations: 92     Fields:    Translation:Humans
  41. Ananthakrishnan AN, Cagan A, Cai T, Gainer VS, Shaw SY, Savova G, Churchill S, Karlson EW, Murphy SN, Liao KP, Kohane I. Identification of Nonresponse to Treatment Using Narrative Data in an Electronic Health Record Inflammatory Bowel Disease Cohort. Inflamm Bowel Dis. 2016 Jan; 22(1):151-8. PMID: 26332313.
    Citations: 6     Fields:    Translation:Humans
  42. Dligach D, Miller T, Savova GK. Semi-supervised Learning for Phenotyping Tasks. AMIA Annu Symp Proc. 2015; 2015:502-11. PMID: 26958183.
    Citations: 1     Fields:    Translation:Humans
  43. Lin C, Dligach D, Miller TA, Bethard S, Savova GK. Multilayered temporal modeling for the clinical domain. J Am Med Inform Assoc. 2016 Mar; 23(2):387-95. PMID: 26521301.
    Citations: 16     Fields:    
  44. Castro V, Shen Y, Yu S, Finan S, Pau CT, Gainer V, Keefe CC, Savova G, Murphy SN, Cai T, Welt CK. Identification of subjects with polycystic ovary syndrome using electronic health records. Reprod Biol Endocrinol. 2015 Oct 29; 13:116. PMID: 26510685.
    Citations: 11     Fields:    Translation:Humans
  45. Liao KP, Ananthakrishnan AN, Kumar V, Xia Z, Cagan A, Gainer VS, Goryachev S, Chen P, Savova GK, Agniel D, Churchill S, Lee J, Murphy SN, Plenge RM, Szolovits P, Kohane I, Shaw SY, Karlson EW, Cai T. Methods to Develop an Electronic Medical Record Phenotype Algorithm to Compare the Risk of Coronary Artery Disease across 3 Chronic Disease Cohorts. PLoS One. 2015; 10(8):e0136651. PMID: 26301417.
    Citations: 31     Fields:    Translation:Humans
  46. Kimia AA, Savova G, Landschaft A, Harper MB. An Introduction to Natural Language Processing: How You Can Get More From Those Electronic Notes You Are Generating. Pediatr Emerg Care. 2015 Jul; 31(7):536-41. PMID: 26148107.
    Citations: 7     Fields:    Translation:Humans
  47. Liao KP, Cai T, Savova GK, Murphy SN, Karlson EW, Ananthakrishnan AN, Gainer VS, Shaw SY, Xia Z, Szolovits P, Churchill S, Kohane I. Development of phenotype algorithms using electronic medical records and incorporating natural language processing. BMJ. 2015 Apr 24; 350:h1885. PMID: 25911572.
    Citations: 70     Fields:    Translation:Humans
  48. Haug PJ, Wu X, Ferraro JP, Savova GK, Huff SM, Chute CG. Developing a section labeler for clinical documents. AMIA Annu Symp Proc. 2014; 2014:636-44. PMID: 25954369.
    Citations: 4     Fields:    
  49. Lin C, Karlson EW, Dligach D, Ramirez MP, Miller TA, Mo H, Braggs NS, Cagan A, Gainer V, Denny JC, Savova GK. Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record. J Am Med Inform Assoc. 2015 Apr; 22(e1):e151-61. PMID: 25344930.
    Citations: 28     Fields:    Translation:Humans
  50. Pradhan S, Elhadad N, South BR, Martinez D, Christensen L, Vogel A, Suominen H, Chapman WW, Savova G. Evaluating the state of the art in disorder recognition and normalization of the clinical narrative. J Am Med Inform Assoc. 2015 Jan; 22(1):143-54. PMID: 25147248.
    Citations: 40     Fields:    Translation:Humans
  51. Styler WF, Bethard S, Finan S, Palmer M, Pradhan S, de Groen PC, Erickson B, Miller T, Lin C, Savova G, Pustejovsky J. Temporal Annotation in the Clinical Domain. Trans Assoc Comput Linguist. 2014 Apr; 2:143-154. PMID: 29082229.
    Citations: 17     
  52. Carrell DS, Halgrim S, Tran DT, Buist DS, Chubak J, Chapman WW, Savova G. Carrell et al. respond to "Observational research and the EHR". Am J Epidemiol. 2014 Mar 15; 179(6):762-3. PMID: 24488509.
    Citations: 2     Fields:    Translation:Humans
  53. Carrell DS, Halgrim S, Tran DT, Buist DS, Chubak J, Chapman WW, Savova G. Using natural language processing to improve efficiency of manual chart abstraction in research: the case of breast cancer recurrence. Am J Epidemiol. 2014 Mar 15; 179(6):749-58. PMID: 24488511.
    Citations: 49     Fields:    Translation:Humans
  54. Xia Z, Secor E, Chibnik LB, Bove RM, Cheng S, Chitnis T, Cagan A, Gainer VS, Chen PJ, Liao KP, Shaw SY, Ananthakrishnan AN, Szolovits P, Weiner HL, Karlson EW, Murphy SN, Savova GK, Cai T, Churchill SE, Plenge RM, Kohane IS, De Jager PL. Modeling disease severity in multiple sclerosis using electronic health records. PLoS One. 2013; 8(11):e78927. PMID: 24244385.
    Citations: 28     Fields:    Translation:HumansCTClinical Trials
  55. Pathak J, Bailey KR, Beebe CE, Bethard S, Carrell DC, Chen PJ, Dligach D, Endle CM, Hart LA, Haug PJ, Huff SM, Kaggal VC, Li D, Liu H, Marchant K, Masanz J, Miller T, Oniki TA, Palmer M, Peterson KJ, Rea S, Savova GK, Stancl CR, Sohn S, Solbrig HR, Suesse DB, Tao C, Taylor DP, Westberg L, Wu S, Zhuo N, Chute CG. Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium. J Am Med Inform Assoc. 2013 Dec; 20(e2):e341-8. PMID: 24190931.
    Citations: 41     Fields:    Translation:Humans
  56. Dligach D, Bethard S, Becker L, Miller T, Savova GK. Discovering body site and severity modifiers in clinical texts. J Am Med Inform Assoc. 2014 May-Jun; 21(3):448-54. PMID: 24091648.
    Citations: 14     Fields:    Translation:Humans
  57. McMurry AJ, Fitch B, Savova G, Kohane IS, Reis BY. Improved de-identification of physician notes through integrative modeling of both public and private medical text. BMC Med Inform Decis Mak. 2013 Oct 02; 13:112. PMID: 24083569.
    Citations: 6     Fields:    Translation:Humans
  58. Lin C, Karlson EW, Canhao H, Miller TA, Dligach D, Chen PJ, Perez RN, Shen Y, Weinblatt ME, Shadick NA, Plenge RM, Savova GK. Automatic prediction of rheumatoid arthritis disease activity from the electronic medical records. PLoS One. 2013; 8(8):e69932. PMID: 23976944.
    Citations: 30     Fields:    Translation:Humans
  59. Ananthakrishnan AN, Cagan A, Gainer VS, Cai T, Cheng SC, Savova G, Chen P, Szolovits P, Xia Z, De Jager PL, Shaw SY, Churchill S, Karlson EW, Kohane I, Plenge RM, Murphy SN, Liao KP. Normalization of plasma 25-hydroxy vitamin D is associated with reduced risk of surgery in Crohn's disease. Inflamm Bowel Dis. 2013 Aug; 19(9):1921-7. PMID: 23751398.
    Citations: 75     Fields:    Translation:Humans
  60. Ananthakrishnan AN, Cai T, Savova G, Cheng SC, Chen P, Perez RG, Gainer VS, Murphy SN, Szolovits P, Xia Z, Shaw S, Churchill S, Karlson EW, Kohane I, Plenge RM, Liao KP. Improving case definition of Crohn's disease and ulcerative colitis in electronic medical records using natural language processing: a novel informatics approach. Inflamm Bowel Dis. 2013 Jun; 19(7):1411-20. PMID: 23567779.
    Citations: 59     Fields:    Translation:Humans
  61. Liu K, Mitchell KJ, Chapman WW, Savova GK, Sioutos N, Rubin DL, Crowley RS. Formative evaluation of ontology learning methods for entity discovery by using existing ontologies as reference standards. Methods Inf Med. 2013; 52(4):308-16. PMID: 23666409.
    Citations: 4     Fields:    Translation:Humans
  62. Albright D, Lanfranchi A, Fredriksen A, Styler WF, Warner C, Hwang JD, Choi JD, Dligach D, Nielsen RD, Martin J, Ward W, Palmer M, Savova GK. Towards comprehensive syntactic and semantic annotations of the clinical narrative. J Am Med Inform Assoc. 2013 Sep-Oct; 20(5):922-30. PMID: 23355458.
    Citations: 39     Fields:    Translation:Humans
  63. Ananthakrishnan AN, Gainer VS, Cai T, Perez RG, Cheng SC, Savova G, Chen P, Szolovits P, Xia Z, De Jager PL, Shaw S, Churchill S, Karlson EW, Kohane I, Perlis RH, Plenge RM, Murphy SN, Liao KP. Similar risk of depression and anxiety following surgery or hospitalization for Crohn's disease and ulcerative colitis. Am J Gastroenterol. 2013 Apr; 108(4):594-601. PMID: 23337479.
    Citations: 21     Fields:    Translation:Humans
  64. Ananthakrishnan AN, Gainer VS, Perez RG, Cai T, Cheng SC, Savova G, Chen P, Szolovits P, Xia Z, De Jager PL, Shaw SY, Churchill S, Karlson EW, Kohane I, Perlis RH, Plenge RM, Murphy SN, Liao KP. Psychiatric co-morbidity is associated with increased risk of surgery in Crohn's disease. Aliment Pharmacol Ther. 2013 Feb; 37(4):445-54. PMID: 23289600.
    Citations: 36     Fields:    Translation:Humans
  65. Wu ST, Kaggal VC, Dligach D, Masanz JJ, Chen P, Becker L, Chapman WW, Savova GK, Liu H, Chute CG. A common type system for clinical natural language processing. J Biomed Semantics. 2013 Jan 03; 4(1):1. PMID: 23286462.
    Citations: 17     Fields:    
  66. Deleger L, Molnar K, Savova G, Xia F, Lingren T, Li Q, Marsolo K, Jegga A, Kaiser M, Stoutenborough L, Solti I. Large-scale evaluation of automated clinical note de-identification and its impact on information extraction. J Am Med Inform Assoc. 2013 Jan 01; 20(1):84-94. PMID: 22859645.
    Citations: 29     Fields:    Translation:Humans
  67. Chapman WW, Savova GK, Zheng J, Tharp M, Crowley R. Anaphoric reference in clinical reports: characteristics of an annotated corpus. J Biomed Inform. 2012 Jun; 45(3):507-21. PMID: 22343015.
    Citations: 7     Fields:    Translation:Humans
  68. Rea S, Pathak J, Savova G, Oniki TA, Westberg L, Beebe CE, Tao C, Parker CG, Haug PJ, Huff SM, Chute CG. Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: the SHARPn project. J Biomed Inform. 2012 Aug; 45(4):763-71. PMID: 22326800.
    Citations: 70     Fields:    Translation:Humans
  69. Zheng J, Chapman WW, Miller TA, Lin C, Crowley RS, Savova GK. A system for coreference resolution for the clinical narrative. J Am Med Inform Assoc. 2012 Jul-Aug; 19(4):660-7. PMID: 22298565.
    Citations: 13     Fields:    Translation:Humans
  70. Savova GK, Olson JE, Murphy SP, Cafourek VL, Couch FJ, Goetz MP, Ingle JN, Suman VJ, Chute CG, Weinshilboum RM. Automated discovery of drug treatment patterns for endocrine therapy of breast cancer within an electronic medical record. J Am Med Inform Assoc. 2012 Jun; 19(e1):e83-9. PMID: 22140207.
    Citations: 13     Fields:    Translation:Humans
  71. Cairns BL, Nielsen RD, Masanz JJ, Martin JH, Palmer MS, Ward WH, Savova GK. The MiPACQ clinical question answering system. AMIA Annu Symp Proc. 2011; 2011:171-80. PMID: 22195068.
    Citations: 19     Fields:    Translation:Humans
  72. Chute CG, Pathak J, Savova GK, Bailey KR, Schor MI, Hart LA, Beebe CE, Huff SM. The SHARPn project on secondary use of Electronic Medical Record data: progress, plans, and possibilities. AMIA Annu Symp Proc. 2011; 2011:248-56. PMID: 22195076.
    Citations: 26     Fields:    
  73. Sohn S, Kocher JP, Chute CG, Savova GK. Drug side effect extraction from clinical narratives of psychiatry and psychology patients. J Am Med Inform Assoc. 2011 Dec; 18 Suppl 1:i144-9. PMID: 21946242.
    Citations: 45     Fields:    Translation:Humans
  74. Chapman WW, Nadkarni PM, Hirschman L, D'Avolio LW, Savova GK, Uzuner O. Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. J Am Med Inform Assoc. 2011 Sep-Oct; 18(5):540-3. PMID: 21846785.
    Citations: 85     Fields:    Translation:Humans
  75. Zheng J, Chapman WW, Crowley RS, Savova GK. Coreference resolution: a review of general methodologies and applications in the clinical domain. J Biomed Inform. 2011 Dec; 44(6):1113-22. PMID: 21856441.
    Citations: 18     Fields:    Translation:Humans
  76. Savova GK, Chapman WW, Zheng J, Crowley RS. Anaphoric relations in the clinical narrative: corpus creation. J Am Med Inform Assoc. 2011 Jul-Aug; 18(4):459-65. PMID: 21459927.
    Citations: 24     Fields:    Translation:Humans
  77. Wilke RA, Xu H, Denny JC, Roden DM, Krauss RM, McCarty CA, Davis RL, Skaar T, Lamba J, Savova G. The emerging role of electronic medical records in pharmacogenomics. Clin Pharmacol Ther. 2011 Mar; 89(3):379-86. PMID: 21248726.
    Citations: 79     Fields:    Translation:Humans
  78. Tao C, Wei WQ, Solbrig HR, Savova G, Chute CG. CNTRO: A Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives. AMIA Annu Symp Proc. 2010 Nov 13; 2010:787-91. PMID: 21347086.
    Citations: 26     Fields:    Translation:Humans
  79. Savova GK, Fan J, Ye Z, Murphy SP, Zheng J, Chute CG, Kullo IJ. Discovering peripheral arterial disease cases from radiology notes using natural language processing. AMIA Annu Symp Proc. 2010 Nov 13; 2010:722-6. PMID: 21347073.
    Citations: 36     Fields:    Translation:Humans
  80. Sohn S, Murphy SP, Masanz JJ, Kocher JP, Savova GK. Classification of medication status change in clinical narratives. AMIA Annu Symp Proc. 2010 Nov 13; 2010:762-6. PMID: 21347081.
    Citations: 7     Fields:    Translation:Humans
  81. Liu K, Chapman WW, Savova G, Chute CG, Sioutos N, Crowley RS. Effectiveness of lexico-syntactic pattern matching for ontology enrichment with clinical documents. Methods Inf Med. 2011; 50(5):397-407. PMID: 21057720.
    Citations: 8     Fields:    Translation:Humans
  82. Savova GK, Masanz JJ, Ogren PV, Zheng J, Sohn S, Kipper-Schuler KC, Chute CG. Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. J Am Med Inform Assoc. 2010 Sep-Oct; 17(5):507-13. PMID: 20819853.
    Citations: 481     Fields:    
  83. Kullo IJ, Fan J, Pathak J, Savova GK, Ali Z, Chute CG. Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease. J Am Med Inform Assoc. 2010 Sep-Oct; 17(5):568-74. PMID: 20819866.
    Citations: 94     Fields:    Translation:Humans
  84. Kremers HM, Myasoedova E, Crowson CS, Savova G, Gabriel SE, Matteson EL. The Rochester Epidemiology Project: exploiting the capabilities for population-based research in rheumatic diseases. Rheumatology (Oxford). 2011 Jan; 50(1):6-15. PMID: 20627969.
    Citations: 21     Fields:    Translation:Humans
  85. Savova G, Bethard S, Styler W, Martin J, Palmer M, Masanz J, Ward W. Towards temporal relation discovery from the clinical narrative. AMIA Annu Symp Proc. 2009 Nov 14; 2009:568-72. PMID: 20351919.
    Citations: 20     Fields:    Translation:Humans
  86. Sohn S, Savova GK. Mayo clinic smoking status classification system: extensions and improvements. AMIA Annu Symp Proc. 2009 Nov 14; 2009:619-23. PMID: 20351929.
    Citations: 39     Fields:    Translation:Humans
  87. Cheng LT, Zheng J, Savova GK, Erickson BJ. Discerning tumor status from unstructured MRI reports--completeness of information in existing reports and utility of automated natural language processing. J Digit Imaging. 2010 Apr; 23(2):119-32. PMID: 19484309.
    Citations: 33     Fields:    Translation:Humans
  88. Coden A, Savova G, Sominsky I, Tanenblatt M, Masanz J, Schuler K, Cooper J, Guan W, de Groen PC. Automatically extracting cancer disease characteristics from pathology reports into a Disease Knowledge Representation Model. J Biomed Inform. 2009 Oct; 42(5):937-49. PMID: 19135551.
    Citations: 49     Fields:    Translation:Humans
  89. Kim H, Harris MR, Savova GK, Chute CG. The first step toward data reuse: disambiguating concept representation of the locally developed ICU nursing flowsheets. Comput Inform Nurs. 2008 Sep-Oct; 26(5):282-9. PMID: 18769183.
    Citations: 9     Fields:    Translation:Humans
  90. Savova GK, Coden AR, Sominsky IL, Johnson R, Ogren PV, de Groen PC, Chute CG. Word sense disambiguation across two domains: biomedical literature and clinical notes. J Biomed Inform. 2008 Dec; 41(6):1088-100. PMID: 18375190.
    Citations: 22     Fields:    
  91. Meystre SM, Savova GK, Kipper-Schuler KC, Hurdle JF. Extracting information from textual documents in the electronic health record: a review of recent research. Yearb Med Inform. 2008; 128-44. PMID: 18660887.
    Citations: 240     Fields:    Translation:HumansPHPublic Health
  92. Savova GK, Ogren PV, Duffy PH, Buntrock JD, Chute CG. Mayo clinic NLP system for patient smoking status identification. J Am Med Inform Assoc. 2008 Jan-Feb; 15(1):25-8. PMID: 17947622.
    Citations: 56     Fields:    Translation:Humans
  93. Jiang G, Harris MR, Savova GK, Chute CG. Formalizing the International Classification of Functioning, Disability, and Health (ICF) using Formal Concept Analysis (FCA). AMIA Annu Symp Proc. 2007 Oct 11; 994. PMID: 18694094.
    Citations:    Fields:    Translation:Humans
  94. Kim H, Harris MR, Savova GK, Speedie SM, Chute CG. Toward near real-time acuity estimation: a feasibility study. Nurs Res. 2007 Jul-Aug; 56(4):288-94. PMID: 17625469.
    Citations: 1     Fields:    Translation:Humans
  95. Ogren PV, Savova G, Buntrock JD, Chute CG. Building and evaluating annotated corpora for medical NLP systems. AMIA Annu Symp Proc. 2006; 1050. PMID: 17238668.
    Citations: 10     Fields:    Translation:Humans
  96. Kim H, Harris MR, Savova G, Chute CG. Content coverage of SNOMED-CT toward the ICU nursing flowsheets and the acuity indicators. Stud Health Technol Inform. 2006; 122:722-6. PMID: 17102358.
    Citations: 7     Fields:    
  97. Savova G, Harris M, Pakhomov S, Chute CG. Frame semantics and the domain of functioning, disability and health. AMIA Annu Symp Proc. 2005; 1106. PMID: 16779393.
    Citations:    Fields:    Translation:Humans
  98. Harris MR, Savova GK, Johnson TM, Chute CG. A term extraction tool for expanding content in the domain of functioning, disability, and health: proof of concept. J Biomed Inform. 2003 Aug-Oct; 36(4-5):250-9. PMID: 14643720.
    Citations: 6     Fields:    Translation:Humans
  99. Harris M, Kim H, Rhudy L, Savova G, Chute C. Testing the generalizability of the ISO model for nursing diagnoses. AMIA Annu Symp Proc. 2003; 274-8. PMID: 14728177.
    Citations:    Fields:    Translation:Humans
  100. Savova GK, Harris M, Johnson T, Pakhomov SV, Chute CG. A data-driven approach for extracting "the most specific term" for ontology development. AMIA Annu Symp Proc. 2003; 579-83. PMID: 14728239.
    Citations: 4     Fields:    
Local representatives can answer questions about the Profiles website or help with editing a profile or issues with profile data. For assistance with this profile: HMS/HSDM faculty should contact feedbackcatalyst.harvard.edu. For faculty or fellow appointment updates and changes, please ask your appointing department to contact HMS. For fellow personal and demographic information, contact HMS Human Resources at human_resourceshms.harvard.edu. For faculty personal and demographic information, contact HMS Office for Faculty Affairs at facappthms.harvard.edu.
Savova's Networks
Click the
Explore
buttons for more information and interactive visualizations!
Concepts (233)
Explore
_
Co-Authors (49)
Explore
_
Similar People (60)
Explore
_
Same Department 
Explore
_
Physical Neighbors
_
Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.