Harvard Catalyst Profiles

Contact, publication, and social network information about Harvard faculty and fellows.

Debora Marks, Ph.D.

Co-Author

This page shows the publications co-authored by Debora Marks and Chris Sander.
Connection Strength

3.219
  1. Protein structure prediction from sequence variation. Nat Biotechnol. 2012 Nov; 30(11):1072-80.
    View in: PubMed
    Score: 0.518
  2. Protein 3D structure computed from evolutionary sequence variation. PLoS One. 2011; 6(12):e28766.
    View in: PubMed
    Score: 0.487
  3. The EVcouplings Python framework for coevolutionary sequence analysis. Bioinformatics. 2019 05 01; 35(9):1582-1584.
    View in: PubMed
    Score: 0.203
  4. Mutation effects predicted from sequence co-variation. Nat Biotechnol. 2017 02; 35(2):128-135.
    View in: PubMed
    Score: 0.173
  5. Structured States of Disordered Proteins from Genomic Sequences. Cell. 2016 Sep 22; 167(1):158-170.e12.
    View in: PubMed
    Score: 0.170
  6. 3D RNA and Functional Interactions from Evolutionary Couplings. Cell. 2016 May 05; 165(4):963-75.
    View in: PubMed
    Score: 0.165
  7. Inferring Pairwise Interactions from Biological Data Using Maximum-Entropy Probability Models. PLoS Comput Biol. 2015 Jul; 11(7):e1004182.
    View in: PubMed
    Score: 0.157
  8. Sequence co-evolution gives 3D contacts and structures of protein complexes. Elife. 2014 Sep 25; 3.
    View in: PubMed
    Score: 0.148
  9. Three-dimensional structures of membrane proteins from genomic sequencing. Cell. 2012 Jun 22; 149(7):1607-21.
    View in: PubMed
    Score: 0.125
  10. Off-target effects dominate a large-scale RNAi screen for modulators of the TGF-ß pathway and reveal microRNA regulation of TGFBR2. Silence. 2011 Mar 14; 2:3.
    View in: PubMed
    Score: 0.116
  11. Target mRNA abundance dilutes microRNA and siRNA activity. Mol Syst Biol. 2010 Apr 20; 6:363.
    View in: PubMed
    Score: 0.109
  12. Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs. Nat Biotechnol. 2009 Jun; 27(6):549-55.
    View in: PubMed
    Score: 0.102
  13. The microRNA.org resource: targets and expression. Nucleic Acids Res. 2008 Jan; 36(Database issue):D149-53.
    View in: PubMed
    Score: 0.093
  14. Computational analysis of mouse piRNA sequence and biogenesis. PLoS Comput Biol. 2007 Nov; 3(11):e222.
    View in: PubMed
    Score: 0.091
  15. Prediction of human microRNA targets. Methods Mol Biol. 2006; 342:101-13.
    View in: PubMed
    Score: 0.081
  16. Human MicroRNA targets. PLoS Biol. 2004 Nov; 2(11):e363.
    View in: PubMed
    Score: 0.074
  17. MicroRNA targets in Drosophila. Genome Biol. 2003; 5(1):R1.
    View in: PubMed
    Score: 0.070
  18. Combining Evolutionary Covariance and NMR Data for Protein Structure Determination. Methods Enzymol. 2019; 614:363-392.
    View in: PubMed
    Score: 0.050
  19. A Hybrid Approach for Protein Structure Determination Combining Sparse NMR with Evolutionary Coupling Sequence Data. Adv Exp Med Biol. 2018; 1105:153-169.
    View in: PubMed
    Score: 0.046
  20. Pathway and network analysis of cancer genomes. Nat Methods. 2015 Jul; 12(7):615-621.
    View in: PubMed
    Score: 0.039
  21. Protein structure determination by combining sparse NMR data with evolutionary couplings. Nat Methods. 2015 Aug; 12(8):751-4.
    View in: PubMed
    Score: 0.039
  22. All-atom 3D structure prediction of transmembrane ß-barrel proteins from sequences. Proc Natl Acad Sci U S A. 2015 Apr 28; 112(17):5413-8.
    View in: PubMed
    Score: 0.038
  23. PconsFold: improved contact predictions improve protein models. Bioinformatics. 2014 Sep 01; 30(17):i482-8.
    View in: PubMed
    Score: 0.037
  24. Direct-coupling analysis of residue coevolution captures native contacts across many protein families. Proc Natl Acad Sci U S A. 2011 Dec 06; 108(49):E1293-301.
    View in: PubMed
    Score: 0.030
  25. MicroRNA profiling of the murine hematopoietic system. Genome Biol. 2005; 6(8):R71.
    View in: PubMed
    Score: 0.020
  26. Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development. Cell. 2005 Jul 01; 121(7):1097-108.
    View in: PubMed
    Score: 0.019
  27. The developmental miRNA profiles of zebrafish as determined by small RNA cloning. Genes Dev. 2005 Jun 01; 19(11):1288-93.
    View in: PubMed
    Score: 0.019
Connection Strength
The connection strength for co-authors is the sum of the scores for each of their shared publications.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.