Harvard Catalyst Profiles

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Robert John Petrella, M.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Kaseva K, Tervaniemi M, Heikura E, Kostilainen K, Pöyhönen-Alho M, Shoemaker JK, Petrella RJ, Peltonen JE. Identifying Personality Characteristics and Indicators of Psychological Well-Being Associated With Attrition in the Motivation Makes the Move! Physical Activity Intervention: Randomized Technology-Supported Trial. JMIR Form Res. 2022 Nov 25; 6(11):e30285. PMID: 36427239; PMCID: PMC9736762.
    Citations:    
  2. Percival A, Newton C, Mulligan K, Petrella RJ, Ashe MC. Systematic review of social prescribing and older adults: where to from here? Fam Med Community Health. 2022 Oct; 10(Suppl 1). PMID: 36207017; PMCID: PMC9557282.
    Citations:    Fields:    Translation:Humans
  3. Petrella, R.J. Optimization Bias in Energy-Based Structure Prediction. J. Theor Comput Chem. 2013; 12(8):1341014.
  4. Petrella RJ. A versatile method for systematic conformational searches: Application to CheY. J Comput Chem. 2011; 32(11):2369-2385.
  5. Brooks BR, Brooks CL, Mackerell AD, Nilsson L, Petrella RJ, Roux B, Won Y, Archontis G, Bartels C, Boresch S, Caflisch A, Caves L, Cui Q, Dinner AR, Feig M, Fischer S, Gao J, Hodoscek M, Im W, Kuczera K, Lazaridis T, Ma J, Ovchinnikov V, Paci E, Pastor RW, Post CB, Pu JZ, Schaefer M, Tidor B, Venable RM, Woodcock HL, Wu X, Yang W, York DM, Karplus M. CHARMM: the biomolecular simulation program. J Comput Chem. 2009 Jul 30; 30(10):1545-614. PMID: 19444816.
    Citations: 2596     Fields:    
  6. Komazin-Meredith G, Petrella RJ, Santos WL, Filman DJ, Hogle JM, Verdine GL, Karplus M, Coen DM. The human cytomegalovirus UL44 C clamp wraps around DNA. Structure. 2008 Aug 06; 16(8):1214-25. PMID: 18682223.
    Citations: 18     Fields:    Translation:HumansCells
  7. Petrella RJ, Karplus M. Electrostatic energies and forces computed without explicit interparticle interactions: a linear time complexity formulation. J Comput Chem. 2005 Jun; 26(8):755-87. PMID: 15800892.
    Citations: 1     Fields:    
  8. Petrella RJ, Karplus M. The role of carbon-donor hydrogen bonds in stabilizing tryptophan conformations. Proteins. 2004 Mar 01; 54(4):716-26. PMID: 14997567.
    Citations: 4     Fields:    Translation:Cells
  9. Petrella RJ, Andricioaei I, Brooks BR, Karplus M. An improved method for nonbonded list generation: rapid determination of near-neighbor pairs. J Comput Chem. 2003 Jan 30; 24(2):222-31. PMID: 12497601.
    Citations: 6     Fields:    
  10. Petrella RJ, Karplus M. The energetics of off-rotamer protein side-chain conformations. J Mol Biol. 2001 Oct 05; 312(5):1161-75. PMID: 11580256.
    Citations: 14     Fields:    Translation:Cells
  11. Petrella RJ, Lazaridis T, Karplus M. A Limiting-Case Study of Protein Structure Prediction: Energy-Based Searches of Reduced Conformational Space. J Phys Chem. 2000; 104:11370-11378.
  12. Petrella RJ, Lazaridis T, Karplus M. Protein sidechain conformer prediction: a test of the energy function. Fold Des. 1998; 3(5):353-77. PMID: 9806937.
    Citations: 15     Fields:    Translation:Cells
  13. Petrella RJ, Yokoyama MM. Ubihomologous homology usage. Nature. 1990 Feb 08; 343(6258):518. PMID: 2300203.
    Citations:    Fields:    
  14. Petrella RJ, Yokoyama MM. Enzyme-Inhibiting Antibodies and Immunoglobulin Combining Site Functional Perspectives. Kurume Med J. 1990; 37:209-238.
  15. Inoue M, Sei Y, Kashiwagi S, Shingu T, Yokoyama MM. Presence of HIV-1 Reverse Transcriptase Inhibitory Antibodies and Absence of Anti-HIV Neutralizing Antibodies in the Sera of Some HTLV-I Carriers. JPN J Clin Lab Immun. 1989; 28:173-177.
  16. Sei Y, Inoue M, Yokoyama MM, Petrella RJ. Immunity in AIDS. JPN J Immun. 1988; 20:389.
  17. Sei Y, Tsang PH, Petrella RJ, Bekesi JG. Multiple dysfunctions in developmental and activational stages of T lymphocytes, B lymphocytes and monocytes in ARC and AIDS patients. Immunol Lett. 1987 Nov; 16(2):157-62. PMID: 3501405.
    Citations: 1     Fields:    Translation:HumansCells
  18. Sei Y, Petrella RJ, Inoue M, Yokoyama MM, Bekesi JG. Prognostic Importance of Presence of NAb and Anti-p17/24 Antibodies in HIV Infected Individuals. Blood. 1987; 70:126a.
  19. Sei Y, Petrella RJ, Tsang P, Bekesi JG, Yokoyama MM. Monocytes in AIDS. N Engl J Med. 1986 Dec 18; 315(25):1611-2. PMID: 3466035.
    Citations: 7     Fields:    Translation:HumansCells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.