Harvard Catalyst Profiles

Contact, publication, and social network information about Harvard faculty and fellows.

Stephen Schaffner, Ph.D.

Co-Author

This page shows the publications co-authored by Stephen Schaffner and Daniel Neafsey.
Connection Strength

1.417
  1. hmmIBD: software to infer pairwise identity by descent between haploid genotypes. Malar J. 2018 May 15; 17(1):196.
    View in: PubMed
    Score: 0.761
  2. SNP genotyping identifies new signatures of selection in a deep sample of West African Plasmodium falciparum malaria parasites. Mol Biol Evol. 2012 Nov; 29(11):3249-53.
    View in: PubMed
    Score: 0.126
  3. Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence. Genome Biol. 2008; 9(12):R171.
    View in: PubMed
    Score: 0.099
  4. Use of a Plasmodium vivax genetic barcode for genomic surveillance and parasite tracking in Sri Lanka. Malar J. 2020 Sep 21; 19(1):342.
    View in: PubMed
    Score: 0.056
  5. Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent. PLoS Genet. 2017 Oct; 13(10):e1007065.
    View in: PubMed
    Score: 0.046
  6. Genetic relatedness analysis reveals the cotransmission of genetically related Plasmodium falciparum parasites in Thiès, Senegal. Genome Med. 2017 01 24; 9(1):5.
    View in: PubMed
    Score: 0.043
  7. Modeling malaria genomics reveals transmission decline and rebound in Senegal. Proc Natl Acad Sci U S A. 2015 Jun 02; 112(22):7067-72.
    View in: PubMed
    Score: 0.039
  8. Development of a single nucleotide polymorphism barcode to genotype Plasmodium vivax infections. PLoS Negl Trop Dis. 2015 Mar; 9(3):e0003539.
    View in: PubMed
    Score: 0.038
  9. Genetic surveillance detects both clonal and epidemic transmission of malaria following enhanced intervention in Senegal. PLoS One. 2013; 8(4):e60780.
    View in: PubMed
    Score: 0.033
  10. Sequence-based association and selection scans identify drug resistance loci in the Plasmodium falciparum malaria parasite. Proc Natl Acad Sci U S A. 2012 Aug 07; 109(32):13052-7.
    View in: PubMed
    Score: 0.032
  11. Genomic sequencing of Plasmodium falciparum malaria parasites from Senegal reveals the demographic history of the population. Mol Biol Evol. 2012 Nov; 29(11):3427-39.
    View in: PubMed
    Score: 0.032
  12. Harnessing genomics and genome biology to understand malaria biology. Nat Rev Genet. 2012 Apr 12; 13(5):315-28.
    View in: PubMed
    Score: 0.031
  13. Human cerebral malaria and Plasmodium falciparum genotypes in Malawi. Malar J. 2012 Feb 07; 11:35.
    View in: PubMed
    Score: 0.031
  14. Identification and functional validation of the novel antimalarial resistance locus PF10_0355 in Plasmodium falciparum. PLoS Genet. 2011 Apr; 7(4):e1001383.
    View in: PubMed
    Score: 0.029
  15. A genome-wide map of diversity in Plasmodium falciparum. Nat Genet. 2007 Jan; 39(1):113-9.
    View in: PubMed
    Score: 0.022
Connection Strength
The connection strength for co-authors is the sum of the scores for each of their shared publications.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.