Harvard Catalyst Profiles

Contact, publication, and social network information about Harvard faculty and fellows.

Steven P. Gygi, Ph.D.

Co-Author

This page shows the publications co-authored by Steven Gygi and Wilhelm Haas.
Connection Strength

3.329
  1. Optimization and use of peptide mass measurement accuracy in shotgun proteomics. Mol Cell Proteomics. 2006 Jul; 5(7):1326-37.
    View in: PubMed
    Score: 0.353
  2. Generation of multiple reporter ions from a single isobaric reagent increases multiplexing capacity for quantitative proteomics. Anal Chem. 2015 Oct 06; 87(19):9855-63.
    View in: PubMed
    Score: 0.169
  3. MultiNotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes. Anal Chem. 2014 Jul 15; 86(14):7150-8.
    View in: PubMed
    Score: 0.156
  4. Mass spectrometry based method to increase throughput for kinome analyses using ATP probes. Anal Chem. 2013 May 07; 85(9):4666-74.
    View in: PubMed
    Score: 0.143
  5. Quantitative comparison of the fasted and re-fed mouse liver phosphoproteomes using lower pH reductive dimethylation. Methods. 2013 Jun 15; 61(3):277-86.
    View in: PubMed
    Score: 0.143
  6. Accurate multiplexed proteomics at the MS2 level using the complement reporter ion cluster. Anal Chem. 2012 Nov 06; 84(21):9214-21.
    View in: PubMed
    Score: 0.139
  7. Increasing the multiplexing capacity of TMTs using reporter ion isotopologues with isobaric masses. Anal Chem. 2012 Sep 04; 84(17):7469-78.
    View in: PubMed
    Score: 0.137
  8. MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics. Nat Methods. 2011 Oct 02; 8(11):937-40.
    View in: PubMed
    Score: 0.129
  9. Evaluation of HCD- and CID-type fragmentation within their respective detection platforms for murine phosphoproteomics. Mol Cell Proteomics. 2011 Dec; 10(12):M111.009910.
    View in: PubMed
    Score: 0.128
  10. A large-scale method to measure absolute protein phosphorylation stoichiometries. Nat Methods. 2011 Jul 03; 8(8):677-83.
    View in: PubMed
    Score: 0.127
  11. Correct interpretation of comprehensive phosphorylation dynamics requires normalization by protein expression changes. Mol Cell Proteomics. 2011 Aug; 10(8):M111.009654.
    View in: PubMed
    Score: 0.125
  12. A tissue-specific atlas of mouse protein phosphorylation and expression. Cell. 2010 Dec 23; 143(7):1174-89.
    View in: PubMed
    Score: 0.122
  13. Gas-phase rearrangements do not affect site localization reliability in phosphoproteomics data sets. J Proteome Res. 2010 Jun 04; 9(6):3103-7.
    View in: PubMed
    Score: 0.117
  14. The impact of peptide abundance and dynamic range on stable-isotope-based quantitative proteomic analyses. J Proteome Res. 2008 Nov; 7(11):4756-65.
    View in: PubMed
    Score: 0.104
  15. The effects of mass accuracy, data acquisition speed, and search algorithm choice on peptide identification rates in phosphoproteomics. Anal Bioanal Chem. 2007 Nov; 389(5):1409-19.
    View in: PubMed
    Score: 0.097
  16. Assessing enzyme activities using stable isotope labeling and mass spectrometry. Mol Cell Proteomics. 2007 Oct; 6(10):1771-7.
    View in: PubMed
    Score: 0.096
  17. Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae. J Proteome Res. 2007 Mar; 6(3):1190-7.
    View in: PubMed
    Score: 0.094
  18. Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations. Nat Methods. 2005 Sep; 2(9):667-75.
    View in: PubMed
    Score: 0.084
  19. Native Chromatin Proteomics Reveals a Role for Specific Nucleoporins in Heterochromatin Organization and Maintenance. Mol Cell. 2020 01 02; 77(1):51-66.e8.
    View in: PubMed
    Score: 0.057
  20. Identification of UHRF2 as a novel DNA interstrand crosslink sensor protein. PLoS Genet. 2018 10; 14(10):e1007643.
    View in: PubMed
    Score: 0.052
  21. Cogenerating Synthetic Parts toward a Self-Replicating System. ACS Synth Biol. 2017 07 21; 6(7):1327-1336.
    View in: PubMed
    Score: 0.047
  22. PHD3 Loss in Cancer Enables Metabolic Reliance on Fatty Acid Oxidation via Deactivation of ACC2. Mol Cell. 2016 09 15; 63(6):1006-20.
    View in: PubMed
    Score: 0.045
  23. On the Relationship of Protein and mRNA Dynamics in Vertebrate Embryonic Development. Dev Cell. 2015 Nov 09; 35(3):383-94.
    View in: PubMed
    Score: 0.043
  24. UHRF1 is a sensor for DNA interstrand crosslinks and recruits FANCD2 to initiate the Fanconi anemia pathway. Cell Rep. 2015 Mar 31; 10(12):1947-56.
    View in: PubMed
    Score: 0.041
  25. Large-scale proteomic characterization of melanoma expressed proteins reveals nestin and vimentin as biomarkers that can potentially distinguish melanoma subtypes. J Proteome Res. 2014 Nov 07; 13(11):5031-40.
    View in: PubMed
    Score: 0.040
  26. SUMOylation of pancreatic glucokinase regulates its cellular stability and activity. J Biol Chem. 2013 Feb 22; 288(8):5951-62.
    View in: PubMed
    Score: 0.035
  27. Yin Yang 1 deficiency in skeletal muscle protects against rapamycin-induced diabetic-like symptoms through activation of insulin/IGF signaling. Cell Metab. 2012 Apr 04; 15(4):505-17.
    View in: PubMed
    Score: 0.033
  28. Multiplexed in vivo His-tagging of enzyme pathways for in vitro single-pot multienzyme catalysis. ACS Synth Biol. 2012 Feb 17; 1(2):43-52.
    View in: PubMed
    Score: 0.033
  29. Succinate dehydrogenase is a direct target of sirtuin 3 deacetylase activity. PLoS One. 2011; 6(8):e23295.
    View in: PubMed
    Score: 0.032
  30. Proteome-wide systems analysis of a cellulosic biofuel-producing microbe. Mol Syst Biol. 2011 Jan 18; 7:461.
    View in: PubMed
    Score: 0.031
  31. Global phosphorylation analysis of beta-arrestin-mediated signaling downstream of a seven transmembrane receptor (7TMR). Proc Natl Acad Sci U S A. 2010 Aug 24; 107(34):15299-304.
    View in: PubMed
    Score: 0.030
  32. WDR20 regulates activity of the USP12 x UAF1 deubiquitinating enzyme complex. J Biol Chem. 2010 Apr 09; 285(15):11252-7.
    View in: PubMed
    Score: 0.029
  33. Cdc2-like kinase 2 is an insulin-regulated suppressor of hepatic gluconeogenesis. Cell Metab. 2010 Jan; 11(1):23-34.
    View in: PubMed
    Score: 0.029
  34. Chaperone-mediated pathway of proteasome regulatory particle assembly. Nature. 2009 Jun 11; 459(7248):861-5.
    View in: PubMed
    Score: 0.027
  35. GCN5-mediated transcriptional control of the metabolic coactivator PGC-1beta through lysine acetylation. J Biol Chem. 2009 Jul 24; 284(30):19945-52.
    View in: PubMed
    Score: 0.027
  36. Isolation of mammalian 26S proteasomes and p97/VCP complexes using the ubiquitin-like domain from HHR23B reveals novel proteasome-associated proteins. Biochemistry. 2009 Mar 24; 48(11):2538-49.
    View in: PubMed
    Score: 0.027
  37. UAF1 is a subunit of multiple deubiquitinating enzyme complexes. J Biol Chem. 2009 Feb 20; 284(8):5343-51.
    View in: PubMed
    Score: 0.027
  38. In situ observation of protein phosphorylation by high-resolution NMR spectroscopy. Nat Struct Mol Biol. 2008 Mar; 15(3):321-9.
    View in: PubMed
    Score: 0.025
  39. A UAF1-containing multisubunit protein complex regulates the Fanconi anemia pathway. Mol Cell. 2007 Dec 14; 28(5):786-97.
    View in: PubMed
    Score: 0.025
  40. RNAi-dependent and -independent RNA turnover mechanisms contribute to heterochromatic gene silencing. Cell. 2007 May 18; 129(4):707-21.
    View in: PubMed
    Score: 0.024
  41. Regulation of monoubiquitinated PCNA by DUB autocleavage. Nat Cell Biol. 2006 Apr; 8(4):339-47.
    View in: PubMed
    Score: 0.022
  42. Cdc28-dependent regulation of the Cdc5/Polo kinase. Curr Biol. 2005 Nov 22; 15(22):2033-7.
    View in: PubMed
    Score: 0.021
  43. Cdk1-dependent regulation of the mitotic inhibitor Wee1. Cell. 2005 Aug 12; 122(3):407-20.
    View in: PubMed
    Score: 0.021
  44. The HEAT repeat protein Blm10 regulates the yeast proteasome by capping the core particle. Nat Struct Mol Biol. 2005 Apr; 12(4):294-303.
    View in: PubMed
    Score: 0.020
  45. Nutrient control of glucose homeostasis through a complex of PGC-1alpha and SIRT1. Nature. 2005 Mar 03; 434(7029):113-8.
    View in: PubMed
    Score: 0.020
Connection Strength
The connection strength for co-authors is the sum of the scores for each of their shared publications.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.