Harvard Catalyst Profiles

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Michael Baym, Ph.D.


Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Anzai IA, Shaket L, Adesina O, Baym M, Barstow B. Rapid curation of gene disruption collections using Knockout Sudoku. Nat Protoc. 2017 Oct; 12(10):2110-2137. PMID: 28906493.
    Citations: 1     Fields:    Translation:Cells
  2. Riglar DT, Giessen TW, Baym M, Kerns SJ, Niederhuber MJ, Bronson RT, Kotula JW, Gerber GK, Way JC, Silver PA. Engineered bacteria can function in the mammalian gut long-term as live diagnostics of inflammation. Nat Biotechnol. 2017 Jul; 35(7):653-658. PMID: 28553941.
    Citations: 14     Fields:    Translation:AnimalsCells
  3. Myhrvold C, Baym M, Hanikel N, Ong LL, Gootenberg JS, Yin P. Barcode extension for analysis and reconstruction of structures. Nat Commun. 2017 03 13; 8:14698. PMID: 28287117.
    Citations: 3     Fields:    Translation:Cells
  4. Baym M, Shaket L, Anzai IA, Adesina O, Barstow B. Rapid construction of a whole-genome transposon insertion collection for Shewanella oneidensis by Knockout Sudoku. Nat Commun. 2016 11 10; 7:13270. PMID: 27830751.
    Citations: 2     Fields:    Translation:Cells
  5. Stone LK, Baym M, Lieberman TD, Chait R, Clardy J, Kishony R. Compounds that select against the tetracycline-resistance efflux pump. Nat Chem Biol. 2016 Nov; 12(11):902-904. PMID: 27642863.
    Citations: 5     Fields:    Translation:Cells
  6. Baym M, Lieberman TD, Kelsic ED, Chait R, Gross R, Yelin I, Kishony R. Spatiotemporal microbial evolution on antibiotic landscapes. Science. 2016 09 09; 353(6304):1147-51. PMID: 27609891.
    Citations: 25     Fields:    Translation:Cells
  7. Baym M, Stone LK, Kishony R. Multidrug evolutionary strategies to reverse antibiotic resistance. Science. 2016 Jan 01; 351(6268):aad3292. PMID: 26722002.
    Citations: 54     Fields:    Translation:HumansCells
  8. Palmer AC, Toprak E, Baym M, Kim S, Veres A, Bershtein S, Kishony R. Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes. Nat Commun. 2015 Jun 10; 6:7385. PMID: 26060115.
    Citations: 22     Fields:    
  9. Baym M, Kryazhimskiy S, Lieberman TD, Chung H, Desai MM, Kishony R. Inexpensive multiplexed library preparation for megabase-sized genomes. PLoS One. 2015; 10(5):e0128036. PMID: 26000737.
    Citations: 43     Fields:    
  10. Klein DJ, Baym M, Eckhoff P. The Separatrix Algorithm for synthesis and analysis of stochastic simulations with applications in disease modeling. PLoS One. 2014; 9(7):e103467. PMID: 25078087.
    Citations: 2     Fields:    Translation:Humans
  11. Daniels NM, Gallant A, Peng J, Cowen LJ, Baym M, Berger B. Compressive genomics for protein databases. Bioinformatics. 2013 Jul 01; 29(13):i283-90. PMID: 23812995.
  12. Loh PR, Baym M, Berger B. Compressive genomics. Nat Biotechnol. 2012 Jul 10; 30(7):627-30. PMID: 22781691.
    Citations: 24     Fields:    Translation:HumansAnimals
  13. Park D, Singh R, Baym M, Liao CS, Berger B. IsoBase: a database of functionally related proteins across PPI networks. Nucleic Acids Res. 2011 Jan; 39(Database issue):D295-300. PMID: 21177658.
    Citations: 16     Fields:    Translation:HumansAnimals
  14. Lun DS, Rockwell G, Guido NJ, Baym M, Kelner JA, Berger B, Galagan JE, Church GM. Large-scale identification of genetic design strategies using local search. Mol Syst Biol. 2009; 5:296. PMID: 19690565.
    Citations: 38     Fields:    Translation:Cells
  15. Liao CS, Lu K, Baym M, Singh R, Berger B. IsoRankN: spectral methods for global alignment of multiple protein networks. Bioinformatics. 2009 Jun 15; 25(12):i253-8. PMID: 19477996.
    Citations: 62     Fields:    
  16. Baym M, Hübler AW. Conserved quantities and adaptation to the edge of chaos. Phys Rev E Stat Nonlin Soft Matter Phys. 2006 May; 73(5 Pt 2):056210. PMID: 16803029.
    Citations: 1     Fields:    
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Funded by the NIH/NCATS Clinical and Translational Science Award (CTSA) program, grant number UL1TR001102, and through institutional support from Harvard University, Harvard Medical School, Harvard T.H. Chan School of Public Health, Beth Israel Deaconess Medical Center, Boston Children's Hospital, Brigham and Women's Hospital, Massachusetts General Hospital and the Dana Farber Cancer Institute.