Harvard Catalyst Profiles

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Stephen Woloszynek, M.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Kompa B, Hakim JB, Palepu A, Kompa KG, Smith M, Bain PA, Woloszynek S, Painter JL, Bate A, Beam AL. Correction to: Artificial Intelligence Based on Machine Learning in Pharmacovigilance: A Scoping Review. Drug Saf. 2023 Feb 24. PMID: 36826708.
    Citations:    Fields:    
  2. Kompa B, Hakim JB, Palepu A, Kompa KG, Smith M, Bain PA, Woloszynek S, Painter JL, Bate A, Beam AL. Artificial Intelligence Based on Machine Learning in Pharmacovigilance: A Scoping Review. Drug Saf. 2022 05; 45(5):477-491. PMID: 35579812; PMCID: PMC9883349.
    Citations: 1     Fields:    Translation:Humans
  3. Zhao Z, Woloszynek S, Agbavor F, Mell JC, Sokhansanj BA, Rosen GL. Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network. PLoS Comput Biol. 2021 09; 17(9):e1009345. PMID: 34550967.
    Citations: 4     Fields:    Translation:HumansCells
  4. Smith AH, O'Connor MP, Deal B, Kotzer C, Lee A, Wagner B, Joffe J, Woloszynek S, Oliver KM, Russell JA. Does getting defensive get you anywhere?-Seasonal balancing selection, temperature, and parasitoids shape real-world, protective endosymbiont dynamics in the pea aphid. Mol Ecol. 2021 05; 30(10):2449-2472. PMID: 33876478.
    Citations: 7     Fields:    Translation:Animals
  5. Cullen CM, Aneja KK, Beyhan S, Cho CE, Woloszynek S, Convertino M, McCoy SJ, Zhang Y, Anderson MZ, Alvarez-Ponce D, Smirnova E, Karstens L, Dorrestein PC, Li H, Sen Gupta A, Cheung K, Powers JG, Zhao Z, Rosen GL. Emerging Priorities for Microbiome Research. Front Microbiol. 2020; 11:136. PMID: 32140140; PMCID: PMC7042322.
    Citations: 46     
  6. Woloszynek S, Mell JC, Zhao Z, Simpson G, O'Connor MP, Rosen GL. Exploring thematic structure and predicted functionality of 16S rRNA amplicon data. PLoS One. 2019; 14(12):e0219235. PMID: 31825995; PMCID: PMC6905537.
    Citations: 10     Fields:    Translation:HumansCells
  7. Woloszynek S, Zhao Z, Chen J, Rosen GL. 16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses. PLoS Comput Biol. 2019 02; 15(2):e1006721. PMID: 30807567; PMCID: PMC6407789.
    Citations: 11     Fields:    
  8. Ching T, Himmelstein DS, Beaulieu-Jones BK, Kalinin AA, Do BT, Way GP, Ferrero E, Agapow PM, Zietz M, Hoffman MM, Xie W, Rosen GL, Lengerich BJ, Israeli J, Lanchantin J, Woloszynek S, Carpenter AE, Shrikumar A, Xu J, Cofer EM, Lavender CA, Turaga SC, Alexandari AM, Lu Z, Harris DJ, DeCaprio D, Qi Y, Kundaje A, Peng Y, Wiley LK, Segler MHS, Boca SM, Swamidass SJ, Huang A, Gitter A, Greene CS. Opportunities and obstacles for deep learning in biology and medicine. J R Soc Interface. 2018 04; 15(141). PMID: 29618526; PMCID: PMC5938574.
    Citations: 428     Fields:    Translation:Humans
  9. O'Hara NB, Reed HJ, Afshinnekoo E, Harvin D, Caplan N, Rosen G, Frye B, Woloszynek S, Ounit R, Levy S, Butler E, Mason CE. Metagenomic characterization of ambulances across the USA. Microbiome. 2017 09 22; 5(1):125. PMID: 28938903.
    Citations: 12     Fields:    Translation:HumansCells
  10. Woloszynek S, Pastor S, Mell JC, Nandi N, Sokhansanj B, Rosen GL. Engineering Human Microbiota: Influencing Cellular and Community Dynamics for Therapeutic Applications. Int Rev Cell Mol Biol. 2016; 324:67-124. PMID: 27017007.
    Citations: 6     Fields:    Translation:HumansAnimals
  11. Cronin DT, Woloszynek S, Morra WA, Honarvar S, Linder JM, Gonder MK, O'Connor MP, Hearn GW. Long-Term Urban Market Dynamics Reveal Increased Bushmeat Carcass Volume despite Economic Growth and Proactive Environmental Legislation on Bioko Island, Equatorial Guinea. PLoS One. 2015; 10(7):e0134464. PMID: 26230504.
    Citations: 5     Fields:    Translation:Animals
  12. Kangovi S, Edwards M, Woloszynek S, Mitra N, Feldman H, Kaplan BS, Meyers KE. Renin-angiotensin-aldosterone system inhibitors in pediatric focal segmental glomerulosclerosis. Pediatr Nephrol. 2012 May; 27(5):813-9. PMID: 22116578.
    Citations: 8     Fields:    Translation:Humans
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© 2023 President and Fellows of Harvard College
Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.