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Mainak Jas, Ph.D.


Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Mamashli F, Khan S, Hämäläinen M, Jas M, Raij T, Stufflebeam SM, Nummenmaa A, Ahveninen J. Synchronization patterns reveal neuronal coding of working memory content. Cell Rep. 2021 08 24; 36(8):109566. PMID: 34433024; PMCID: PMC8428113.
    Citations: 3     Fields:    Translation:HumansCellsCTClinical Trials
  2. Jas M, Jones SR, Hämäläinen MS. Whole-head OPM-MEG enables noninvasive assessment of functional connectivity. Trends Neurosci. 2021 07; 44(7):510-512. PMID: 33965213.
    Citations: 4     Fields:    Translation:Humans
  3. Meunier D, Pascarella A, Altukhov D, Jas M, Combrisson E, Lajnef T, Bertrand-Dubois D, Hadid V, Alamian G, Alves J, Barlaam F, Saive AL, Dehgan A, Jerbi K. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines. Neuroimage. 2020 10 01; 219:117020. PMID: 32522662.
    Citations: 12     Fields:    Translation:Humans
  4. Neymotin SA, Daniels DS, Caldwell B, McDougal RA, Carnevale NT, Jas M, Moore CI, Hines ML, Hämäläinen M, Jones SR. Human Neocortical Neurosolver (HNN), a new software tool for interpreting the cellular and network origin of human MEG/EEG data. Elife. 2020 01 22; 9. PMID: 31967544.
    Citations: 17     Fields:    Translation:Humans
  5. Appelhoff S, Sanderson M, Brooks TL, van Vliet M, Quentin R, Holdgraf C, Chaumon M, Mikulan E, Tavabi K, Höchenberger R, Welke D, Brunner C, Rockhill AP, Larson E, Gramfort A, Jas M. MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. J Open Source Softw. 2019; 4(44). PMID: 35990374; PMCID: PMC9390980.
    Citations: 8     
  6. Yarkoni T, Markiewicz CJ, de la Vega A, Gorgolewski KJ, Salo T, Halchenko YO, McNamara Q, DeStasio K, Poline JB, Petrov D, Hayot-Sasson V, Nielson DM, Carlin J, Kiar G, Whitaker K, DuPre E, Wagner A, Tirrell LS, Jas M, Hanke M, Poldrack RA, Esteban O, Appelhoff S, Holdgraf C, Staden I, Thirion B, Kleinschmidt DF, Lee JA, Visconti di Oleggio Castello M, Notter MP, Blair R. PyBIDS: Python tools for BIDS datasets. J Open Source Softw. 2019; 4(40). PMID: 32775955; PMCID: PMC7409983.
    Citations: 11     
  7. Holdgraf C, Appelhoff S, Bickel S, Bouchard K, D'Ambrosio S, David O, Devinsky O, Dichter B, Flinker A, Foster BL, Gorgolewski KJ, Groen I, Groppe D, Gunduz A, Hamilton L, Honey CJ, Jas M, Knight R, Lachaux JP, Lau JC, Lee-Messer C, Lundstrom BN, Miller KJ, Ojemann JG, Oostenveld R, Petridou N, Piantoni G, Pigorini A, Pouratian N, Ramsey NF, Stolk A, Swann NC, Tadel F, Voytek B, Wandell BA, Winawer J, Whitaker K, Zehl L, Hermes D. iEEG-BIDS, extending the Brain Imaging Data Structure specification to human intracranial electrophysiology. Sci Data. 2019 06 25; 6(1):102. PMID: 31239438; PMCID: PMC6592874.
    Citations: 35     Fields:    Translation:Humans
  8. Sharma MK, Jas M, Karale V, Sadhu A, Mukhopadhyay S. Mammogram segmentation using multi-atlas deformable registration. Comput Biol Med. 2019 07; 110:244-253. PMID: 31233970.
    Citations: 4     Fields:    Translation:Humans
  9. Combrisson E, Vallat R, O'Reilly C, Jas M, Pascarella A, Saive AL, Thiery T, Meunier D, Altukhov D, Lajnef T, Ruby P, Guillot A, Jerbi K. Visbrain: A Multi-Purpose GPU-Accelerated Open-Source Suite for Multimodal Brain Data Visualization. Front Neuroinform. 2019; 13:14. PMID: 30967769; PMCID: PMC6439346.
    Citations: 17     
  10. Jas M, Larson E, Engemann DA, Leppäkangas J, Taulu S, Hämäläinen M, Gramfort A. A Reproducible MEG/EEG Group Study With the MNE Software: Recommendations, Quality Assessments, and Good Practices. Front Neurosci. 2018; 12:530. PMID: 30127712; PMCID: PMC6088222.
    Citations: 22     
  11. Niso G, Gorgolewski KJ, Bock E, Brooks TL, Flandin G, Gramfort A, Henson RN, Jas M, Litvak V, T Moreau J, Oostenveld R, Schoffelen JM, Tadel F, Wexler J, Baillet S. MEG-BIDS, the brain imaging data structure extended to magnetoencephalography. Sci Data. 2018 06 19; 5:180110. PMID: 29917016; PMCID: PMC6007085.
    Citations: 47     Fields:    Translation:Humans
  12. Jas M, Engemann DA, Bekhti Y, Raimondo F, Gramfort A. Autoreject: Automated artifact rejection for MEG and EEG data. Neuroimage. 2017 10 01; 159:417-429. PMID: 28645840.
    Citations: 64     Fields:    Translation:Humans
  13. Gramfort A, Luessi M, Larson E, Engemann DA, Strohmeier D, Brodbeck C, Goj R, Jas M, Brooks T, Parkkonen L, Hämäläinen M. MEG and EEG data analysis with MNE-Python. Front Neurosci. 2013 Dec 26; 7:267. PMID: 24431986.
    Citations: 474     
  14. Jas M, Mukhopadhyay S, Chakraborty J, Sadhu A, Khandelwal N. A heuristic approach to automated nipple detection in digital mammograms. J Digit Imaging. 2013 Oct; 26(5):932-40. PMID: 23423610.
    Citations:    Fields:    Translation:Humans
  15. Ramkumar P, Jas M, Pannasch S, Hari R, Parkkonen L. Feature-specific information processing precedes concerted activation in human visual cortex. J Neurosci. 2013 May 01; 33(18):7691-9. PMID: 23637162.
    Citations: 21     Fields:    Translation:Humans
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.