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ShengBao Suo, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. VanDusen NJ, Lee JY, Gu W, Butler CE, Sethi I, Zheng Y, King JS, Zhou P, Suo S, Guo Y, Ma Q, Yuan GC, Pu WT. Author Correction: Massively parallel in vivo CRISPR screening identifies RNF20/40 as epigenetic regulators of cardiomyocyte maturation. Nat Commun. 2021 Aug 19; 12(1):5105. PMID: 34413306.
    Citations:    Fields:    
  2. VanDusen NJ, Lee JY, Gu W, Butler CE, Sethi I, Zheng Y, King JS, Zhou P, Suo S, Guo Y, Ma Q, Yuan GC, Pu WT. Massively parallel in vivo CRISPR screening identifies RNF20/40 as epigenetic regulators of cardiomyocyte maturation. Nat Commun. 2021 07 21; 12(1):4442. PMID: 34290256.
    Citations:    Fields:    Translation:AnimalsCells
  3. Fullard JF, Lee HC, Voloudakis G, Suo S, Javidfar B, Shao Z, Peter C, Zhang W, Jiang S, Corvelo A, Wargnier H, Woodoff-Leith E, Purohit DP, Ahuja S, Tsankova NM, Jette N, Hoffman GE, Akbarian S, Fowkes M, Crary JF, Yuan GC, Roussos P. Single-nucleus transcriptome analysis of human brain immune response in patients with severe COVID-19. Genome Med. 2021 07 19; 13(1):118. PMID: 34281603.
    Citations:    Fields:    Translation:HumansCells
  4. Heckler M, Ali LR, Clancy-Thompson E, Qiang L, Ventre KS, Lenehan P, Roehle K, Luoma A, Boelaars K, Peters V, McCreary J, Boschert T, Wang ES, Suo S, Marangoni F, Mempel TR, Long HW, Wucherpfennig KW, Dougan M, Gray NS, Yuan GC, Goel S, Tolaney SM, Dougan SK. Inhibition of CDK4/6 promotes CD8 T-cell memory formation. Cancer Discov. 2021 May 03. PMID: 33941591.
    Citations: 1     Fields:    
  5. Cartwright ANR, Suo S, Badrinath S, Kumar S, Melms J, Luoma A, Bagati A, Saadatpour A, Izar B, Yuan GC, Wucherpfennig KW. Immunosuppressive Myeloid Cells Induce Nitric Oxide-Dependent DNA Damage and p53 Pathway Activation in CD8+ T Cells. Cancer Immunol Res. 2021 04; 9(4):470-485. PMID: 33514509.
    Citations: 3     Fields:    
  6. Takei Y, Yun J, Zheng S, Ollikainen N, Pierson N, White J, Shah S, Thomassie J, Suo S, Eng CL, Guttman M, Yuan GC, Cai L. Integrated spatial genomics reveals global architecture of single nuclei. Nature. 2021 02; 590(7845):344-350. PMID: 33505024.
    Citations: 9     Fields:    Translation:AnimalsCells
  7. Peng G, Suo S, Chen J, Chen W, Liu C, Yu F, Wang R, Chen S, Sun N, Cui G, Song L, Tam PPL, Han JJ, Jing N. Spatial Transcriptome for the Molecular Annotation of Lineage Fates and Cell Identity in Mid-gastrula Mouse Embryo. Dev Cell. 2020 Dec 21; 55(6):802-804. PMID: 33352143.
    Citations:    Fields:    
  8. Peng G, Suo S, Cui G, Yu F, Wang R, Chen J, Chen S, Liu Z, Chen G, Qian Y, Tam PPL, Han JJ, Jing N. Author Correction: Molecular architecture of lineage allocation and tissue organization in early mouse embryo. Nature. 2020 Oct; 586(7827):E7. PMID: 32934359.
    Citations:    Fields:    
  9. Luoma AM, Suo S, Williams HL, Sharova T, Sullivan K, Manos M, Bowling P, Hodi FS, Rahma O, Sullivan RJ, Boland GM, Nowak JA, Dougan SK, Dougan M, Yuan GC, Wucherpfennig KW. Molecular Pathways of Colon Inflammation Induced by Cancer Immunotherapy. Cell. 2020 08 06; 182(3):655-671.e22. PMID: 32603654.
    Citations: 21     Fields:    Translation:HumansCells
  10. Kim HJ, Osteil P, Humphrey SJ, Cinghu S, Oldfield AJ, Patrick E, Wilkie EE, Peng G, Suo S, Jothi R, Tam PPL, Yang P. Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning. Nucleic Acids Res. 2020 02 28; 48(4):1828-1842. PMID: 31853542.
    Citations: 2     Fields:    Translation:AnimalsCells
  11. Peng G, Suo S, Cui G, Yu F, Wang R, Chen J, Chen S, Liu Z, Chen G, Qian Y, Tam PPL, Han JJ, Jing N. Author Correction: Molecular architecture of lineage allocation and tissue organization in early mouse embryo. Nature. 2020 01; 577(7791):E6. PMID: 31896818.
    Citations:    Fields:    
  12. Xu C, Ai D, Shi D, Suo S, Chen X, Yan Y, Cao Y, Zhang R, Sun N, Chen W, McDermott J, Zhang S, Zeng Y, Han JJ. Accurate Drug Repositioning through Non-tissue-Specific Core Signatures from Cancer Transcriptomes. Cell Rep. 2019 Oct 22; 29(4):1055. PMID: 31644902.
    Citations: 1     Fields:    
  13. Peng G, Suo S, Cui G, Yu F, Wang R, Chen J, Chen S, Liu Z, Chen G, Qian Y, Tam PPL, Han JJ, Jing N. Molecular architecture of lineage allocation and tissue organization in early mouse embryo. Nature. 2019 08; 572(7770):528-532. PMID: 31391582.
    Citations: 28     Fields:    Translation:AnimalsCells
  14. Xue Y, Liu D, Cui G, Ding Y, Ai D, Gao S, Zhang Y, Suo S, Wang X, Lv P, Zhou C, Li Y, Chen X, Peng G, Jing N, Han JJ, Liu F. A 3D Atlas of Hematopoietic Stem and Progenitor Cell Expansion by Multi-dimensional RNA-Seq Analysis. Cell Rep. 2019 04 30; 27(5):1567-1578.e5. PMID: 31042481.
    Citations: 10     Fields:    Translation:AnimalsCells
  15. Grootjans J, Krupka N, Hosomi S, Matute JD, Hanley T, Saveljeva S, Gensollen T, Heijmans J, Li H, Limenitakis JP, Ganal-Vonarburg SC, Suo S, Luoma AM, Shimodaira Y, Duan J, Shih DQ, Conner ME, Glickman JN, Fuhler GM, Palm NW, de Zoete MR, van der Woude CJ, Yuan GC, Wucherpfennig KW, Targan SR, Rosenstiel P, Flavell RA, McCoy KD, Macpherson AJ, Kaser A, Blumberg RS. Epithelial endoplasmic reticulum stress orchestrates a protective IgA response. Science. 2019 03 01; 363(6430):993-998. PMID: 30819965.
    Citations: 14     Fields:    Translation:HumansAnimalsCells
  16. Suo S, Zhu Q, Saadatpour A, Fei L, Guo G, Yuan GC. Revealing the Critical Regulators of Cell Identity in the Mouse Cell Atlas. Cell Rep. 2018 11 06; 25(6):1436-1445.e3. PMID: 30404000.
    Citations: 25     Fields:    Translation:AnimalsCells
  17. Xu C, Ai D, Shi D, Suo S, Chen X, Yan Y, Cao Y, Zhang R, Sun N, Chen W, McDermott J, Zhang S, Zeng Y, Han JJ. Accurate Drug Repositioning through Non-tissue-Specific Core Signatures from Cancer Transcriptomes. Cell Rep. 2018 10 09; 25(2):523-535.e5. PMID: 30304690.
    Citations: 3     Fields:    Translation:HumansAnimalsCells
  18. Friedman CE, Nguyen Q, Lukowski SW, Helfer A, Chiu HS, Miklas J, Levy S, Suo S, Han JJ, Osteil P, Peng G, Jing N, Baillie GJ, Senabouth A, Christ AN, Bruxner TJ, Murry CE, Wong ES, Ding J, Wang Y, Hudson J, Ruohola-Baker H, Bar-Joseph Z, Tam PPL, Powell JE, Palpant NJ. Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation. Cell Stem Cell. 2018 10 04; 23(4):586-598.e8. PMID: 30290179.
    Citations: 47     Fields:    Translation:HumansAnimalsCells
  19. Cui G, Suo S, Wang R, Qian Y, Han JJ, Peng G, Tam PPL, Jing N. Mouse gastrulation: Attributes of transcription factor regulatory network for epiblast patterning. Dev Growth Differ. 2018 Oct; 60(8):463-472. PMID: 30368783.
    Citations:    Fields:    Translation:Animals
  20. Sun N, Yu X, Li F, Liu D, Suo S, Chen W, Chen S, Song L, Green CD, McDermott J, Shen Q, Jing N, Han JJ. Inference of differentiation time for single cell transcriptomes using cell population reference data. Nat Commun. 2017 11 30; 8(1):1856. PMID: 29187729.
    Citations: 7     Fields:    Translation:AnimalsCells
  21. Wang X, Liu D, He D, Suo S, Xia X, He X, Han JJ, Zheng P. Corrigendum: Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos. Genome Res. 2017 09; 27(9):1621.2. PMID: 28864552.
    Citations:    Fields:    
  22. Zamir L, Singh R, Nathan E, Patrick R, Yifa O, Yahalom-Ronen Y, Arraf AA, Schultheiss TM, Suo S, Han JJ, Peng G, Jing N, Wang Y, Palpant N, Tam PP, Harvey RP, Tzahor E. Nkx2.5 marks angioblasts that contribute to hemogenic endothelium of the endocardium and dorsal aorta. Elife. 2017 03 08; 6. PMID: 28271994.
    Citations: 7     Fields:    Translation:AnimalsCells
  23. Wang X, Liu D, He D, Suo S, Xia X, He X, Han JJ, Zheng P. Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos. Genome Res. 2017 04; 27(4):567-579. PMID: 28223401.
    Citations: 15     Fields:    Translation:AnimalsCells
  24. Chen J, Suo S, Tam PP, Han JJ, Peng G, Jing N. Spatial transcriptomic analysis of cryosectioned tissue samples with Geo-seq. Nat Protoc. 2017 03; 12(3):566-580. PMID: 28207000.
    Citations: 43     Fields:    Translation:Animals
  25. Chen X, Shi SP, Xu HD, Suo SB, Qiu JD. A homology-based pipeline for global prediction of post-translational modification sites. Sci Rep. 2016 05 13; 6:25801. PMID: 27174170.
    Citations: 1     Fields:    
  26. Peng G, Suo S, Chen J, Chen W, Liu C, Yu F, Wang R, Chen S, Sun N, Cui G, Song L, Tam PP, Han JD, Jing N. Spatial Transcriptome for the Molecular Annotation of Lineage Fates and Cell Identity in Mid-gastrula Mouse Embryo. Dev Cell. 2016 Mar 21; 36(6):681-97. PMID: 27003939.
    Citations: 62     Fields:    Translation:AnimalsCells
  27. Chen X, Shi SP, Suo SB, Xu HD, Qiu JD. Proteomic analysis and prediction of human phosphorylation sites in subcellular level reveal subcellular specificity. Bioinformatics. 2015 Jan 15; 31(2):194-200. PMID: 25236462.
    Citations: 9     Fields:    Translation:HumansCells
  28. Suo SB, Qiu JD, Shi SP, Chen X, Liang RP. PSEA: Kinase-specific prediction and analysis of human phosphorylation substrates. Sci Rep. 2014 Mar 31; 4:4524. PMID: 24681538.
    Citations: 6     Fields:    Translation:HumansCells
  29. Chen X, Qiu JD, Shi SP, Suo SB, Liang RP. Systematic analysis and prediction of pupylation sites in prokaryotic proteins. PLoS One. 2013; 8(9):e74002. PMID: 24019945.
    Citations: 10     Fields:    Translation:Cells
  30. Chen X, Qiu JD, Shi SP, Suo SB, Huang SY, Liang RP. Incorporating key position and amino acid residue features to identify general and species-specific Ubiquitin conjugation sites. Bioinformatics. 2013 Jul 01; 29(13):1614-22. PMID: 23626001.
    Citations: 33     Fields:    Translation:HumansAnimalsCells
  31. Shi SP, Sun XY, Qiu JD, Suo SB, Chen X, Huang SY, Liang RP. The prediction of palmitoylation site locations using a multiple feature extraction method. J Mol Graph Model. 2013 Mar; 40:125-30. PMID: 23419766.
    Citations: 9     Fields:    Translation:Cells
  32. Suo SB, Qiu JD, Shi SP, Chen X, Huang SY, Liang RP. Proteome-wide analysis of amino acid variations that influence protein lysine acetylation. J Proteome Res. 2013 Feb 01; 12(2):949-58. PMID: 23298314.
    Citations: 5     Fields:    Translation:HumansCells
  33. Suo SB, Qiu JD, Shi SP, Sun XY, Huang SY, Chen X, Liang RP. Position-specific analysis and prediction for protein lysine acetylation based on multiple features. PLoS One. 2012; 7(11):e49108. PMID: 23173045.
    Citations: 23     Fields:    Translation:Cells
  34. Sun XY, Shi SP, Qiu JD, Suo SB, Huang SY, Liang RP. Identifying protein quaternary structural attributes by incorporating physicochemical properties into the general form of Chou's PseAAC via discrete wavelet transform. Mol Biosyst. 2012 Oct 30; 8(12):3178-84. PMID: 22990717.
    Citations: 20     Fields:    Translation:Cells
  35. Shi SP, Qiu JD, Sun XY, Suo SB, Huang SY, Liang RP. A method to distinguish between lysine acetylation and lysine methylation from protein sequences. J Theor Biol. 2012 Oct 07; 310:223-30. PMID: 22796329.
    Citations: 4     Fields:    Translation:Cells
  36. Shi SP, Qiu JD, Sun XY, Suo SB, Huang SY, Liang RP. PMeS: prediction of methylation sites based on enhanced feature encoding scheme. PLoS One. 2012; 7(6):e38772. PMID: 22719939.
    Citations: 28     Fields:    Translation:Cells
  37. Huang SY, Shi SP, Qiu JD, Sun XY, Suo SB, Liang RP. PredSulSite: prediction of protein tyrosine sulfation sites with multiple features and analysis. Anal Biochem. 2012 Sep 01; 428(1):16-23. PMID: 22691961.
    Citations: 10     Fields:    Translation:Cells
  38. Shi SP, Qiu JD, Sun XY, Suo SB, Huang SY, Liang RP. PLMLA: prediction of lysine methylation and lysine acetylation by combining multiple features. Mol Biosyst. 2012 Apr; 8(5):1520-7. PMID: 22402705.
    Citations: 19     Fields:    Translation:Cells
  39. Liang RP, Huang SY, Shi SP, Sun XY, Suo SB, Qiu JD. A novel algorithm combining support vector machine with the discrete wavelet transform for the prediction of protein subcellular localization. Comput Biol Med. 2012 Feb; 42(2):180-7. PMID: 22153357.
    Citations: 2     Fields:    Translation:Cells
  40. Qiu JD, Suo SB, Sun XY, Shi SP, Liang RP. OligoPred: a web-server for predicting homo-oligomeric proteins by incorporating discrete wavelet transform into Chou's pseudo amino acid composition. J Mol Graph Model. 2011 Sep; 30:129-34. PMID: 21802968.
    Citations: 6     Fields:    Translation:Cells
  41. Qiu JD, Sun XY, Suo SB, Shi SP, Huang SY, Liang RP, Zhang L. Predicting homo-oligomers and hetero-oligomers by pseudo-amino acid composition: an approach from discrete wavelet transformation. Biochimie. 2011 Jul; 93(7):1132-8. PMID: 21466835.
    Citations: 1     Fields:    Translation:Cells
  42. Shi SP, Qiu JD, Sun XY, Huang JH, Huang SY, Suo SB, Liang RP, Zhang L. Identify submitochondria and subchloroplast locations with pseudo amino acid composition: approach from the strategy of discrete wavelet transform feature extraction. Biochim Biophys Acta. 2011 Mar; 1813(3):424-30. PMID: 21255619.
    Citations: 12     Fields:    Translation:HumansAnimalsCells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.