Harvard Catalyst Profiles

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Satoshi Kimura, Ph.D.


Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Kimura S, Srisuknimit V, McCarty KL, Dedon PC, Kranzusch PJ, Waldor MK. Sequential action of a tRNA base editor in conversion of cytidine to pseudouridine. Nat Commun. 2022 Oct 11; 13(1):5994. PMID: 36220828; PMCID: PMC9553926.
    Citations:    Fields:    
  2. Kimura S, Butt W. Core-Peripheral Temperature Gradient and Skin Temperature as Predictors of Major Adverse Events Among Postoperative Pediatric Cardiac Patients. J Cardiothorac Vasc Anesth. 2022 03; 36(3):690-698. PMID: 34119417.
    Citations:    Fields:    Translation:Humans
  3. Patel BB, Sperotto F, Molina M, Kimura S, Delgado MI, Santillana M, Kheir JN. Avoidable Serum Potassium Testing in the Cardiac ICU: Development and Testing of a Machine-Learning Model. Pediatr Crit Care Med. 2021 04 01; 22(4):392-400. PMID: 33332868.
    Citations:    Fields:    Translation:Humans
  4. Kimura S. Distinct evolutionary pathways for the synthesis and function of tRNA modifications. Brief Funct Genomics. 2021 03 27; 20(2):125-134. PMID: 33454776.
    Citations: 1     Fields:    Translation:Cells
  5. Kimura S, Ahn JB, Takahashi M, Kwon S, Papatheodorou S. Effectiveness of corticosteroids for post-extubation stridor and extubation failure in pediatric patients: a systematic review and meta-analysis. Ann Intensive Care. 2020 Nov 18; 10(1):155. PMID: 33206245.
    Citations: 3     
  6. Parker DJ, Lalanne JB, Kimura S, Johnson GE, Waldor MK, Li GW. Growth-Optimized Aminoacyl-tRNA Synthetase Levels Prevent Maximal tRNA Charging. Cell Syst. 2020 08 26; 11(2):121-130.e6. PMID: 32726597.
    Citations: 11     Fields:    Translation:Humans
  7. Kimura S, Srisuknimit V, Waldor MK. Probing the diversity and regulation of tRNA modifications. Curr Opin Microbiol. 2020 10; 57:41-48. PMID: 32663792; PMCID: PMC7722113.
    Citations: 4     Fields:    Translation:Cells
  8. Kimura S, Dedon PC, Waldor MK. Comparative tRNA sequencing and RNA mass spectrometry for surveying tRNA modifications. Nat Chem Biol. 2020 09; 16(9):964-972. PMID: 32514182; PMCID: PMC8172280.
    Citations: 14     Fields:    Translation:AnimalsCells
  9. Sakai Y, Kimura S, Suzuki T. Dual pathways of tRNA hydroxylation ensure efficient translation by expanding decoding capability. Nat Commun. 2019 06 28; 10(1):2858. PMID: 31253794; PMCID: PMC6599085.
    Citations: 9     Fields:    Translation:Cells
  10. Kimura S, Waldor MK. The RNA degradosome promotes tRNA quality control through clearance of hypomodified tRNA. Proc Natl Acad Sci U S A. 2019 01 22; 116(4):1394-1403. PMID: 30622183; PMCID: PMC6347707.
    Citations: 30     Fields:    Translation:Cells
  11. Kimura S, Iwasaki T, Shimizu K, Kanazawa T, Kawase H, Shioji N, Kuroe Y, Matsuoka Y, Isoyama S, Morimatsu H. Hyperchloremia Is Not an Independent Risk Factor for Postoperative Acute Kidney Injury in Pediatric Cardiac Patients. J Cardiothorac Vasc Anesth. 2019 Jul; 33(7):1939-1945. PMID: 30638924.
    Citations: 2     Fields:    Translation:Humans
  12. Nakashima K, Kimura S, Ogawa Y, Watanabe S, Soma S, Kaneko T, Yamada L, Sawada H, Tung CH, Lu TM, Yu JK, Villar-Briones A, Kikuchi S, Satoh N. Chitin-based barrier immunity and its loss predated mucus-colonization by indigenous gut microbiota. Nat Commun. 2018 08 24; 9(1):3402. PMID: 30143642; PMCID: PMC6109156.
    Citations: 14     Fields:    Translation:Animals
  13. Kimura S, Iwasaki T, Oe K, Shimizu K, Suemori T, Kanazawa T, Shioji N, Kuroe Y, Matsuoka Y, Morimatsu H. High Ionized Calcium Concentration Is Associated With Prolonged Length of Stay in the Intensive Care Unit for Postoperative Pediatric Cardiac Patients. J Cardiothorac Vasc Anesth. 2018 08; 32(4):1667-1675. PMID: 29273480.
    Citations: 3     Fields:    Translation:Humans
  14. Kimura S, Hubbard TP, Davis BM, Waldor MK. The Nucleoid Binding Protein H-NS Biases Genome-Wide Transposon Insertion Landscapes. mBio. 2016 08 30; 7(4). PMID: 27578758; PMCID: PMC4999555.
    Citations: 16     Fields:    Translation:Cells
  15. Sakai Y, Miyauchi K, Kimura S, Suzuki T. Biogenesis and growth phase-dependent alteration of 5-methoxycarbonylmethoxyuridine in tRNA anticodons. Nucleic Acids Res. 2016 Jan 29; 44(2):509-23. PMID: 26681692; PMCID: PMC4737166.
    Citations: 25     Fields:    Translation:Cells
  16. Chao MC, Zhu S, Kimura S, Davis BM, Schadt EE, Fang G, Waldor MK. Correction: A Cytosine Methytransferase Modulates the Cell Envelope Stress Response in the Cholera Pathogen. PLoS Genet. 2015 Dec; 11(12):e1005739. PMID: 26657207; PMCID: PMC4747549.
    Citations: 4     Fields:    
  17. Chao MC, Zhu S, Kimura S, Davis BM, Schadt EE, Fang G, Waldor MK. A Cytosine Methyltransferase Modulates the Cell Envelope Stress Response in the Cholera Pathogen [corrected]. PLoS Genet. 2015 Nov; 11(11):e1005666. PMID: 26588462.
    Citations: 18     Fields:    Translation:Cells
  18. Ito S, Akamatsu Y, Noma A, Kimura S, Miyauchi K, Ikeuchi Y, Suzuki T, Suzuki T. A single acetylation of 18 S rRNA is essential for biogenesis of the small ribosomal subunit in Saccharomyces cerevisiae. J Biol Chem. 2014 Sep 19; 289(38):26201-26212. PMID: 25086048.
    Citations: 30     Fields:    Translation:AnimalsCells
  19. Miyauchi K, Kimura S, Suzuki T. A cyclic form of N6-threonylcarbamoyladenosine as a widely distributed tRNA hypermodification. Nat Chem Biol. 2013 Feb; 9(2):105-11. PMID: 23242255.
    Citations: 90     Fields:    Translation:Cells
  20. Osawa T, Kimura S, Terasaka N, Inanaga H, Suzuki T, Numata T. Structural basis of tRNA agmatinylation essential for AUA codon decoding. Nat Struct Mol Biol. 2011 Oct 16; 18(11):1275-80. PMID: 22002223.
    Citations: 8     Fields:    Translation:Cells
  21. Ikeuchi Y, Kimura S, Numata T, Nakamura D, Yokogawa T, Ogata T, Wada T, Suzuki T, Suzuki T. Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea. Nat Chem Biol. 2010 Apr; 6(4):277-82. PMID: 20139989.
    Citations: 69     Fields:    Translation:Cells
  22. Kimura S, Suzuki T. Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA. Nucleic Acids Res. 2010 Mar; 38(4):1341-52. PMID: 19965768.
    Citations: 80     Fields:    Translation:Cells
  23. Awai T, Kimura S, Tomikawa C, Ochi A, Bessho Y, Yokoyama S, Ohno S, Nishikawa K, Yokogawa T, Suzuki T, Hori H. Aquifex aeolicus tRNA (N2,N2-guanine)-dimethyltransferase (Trm1) catalyzes transfer of methyl groups not only to guanine 26 but also to guanine 27 in tRNA. J Biol Chem. 2009 Jul 31; 284(31):20467-78. PMID: 19491098.
    Citations: 35     Fields:    Translation:Cells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.