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profileKoen Van Leemput, Ph.D.

TitleAssistant Professor of Radiology
InstitutionMassachusetts General Hospital
DepartmentRadiology
AddressMassachusetts General Hospital
Radiology, Rm. 2301
149 13th Street
Charlestown MA 02129
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R01EB013565     (VAN LEEMPUT, KOEN)Apr 1, 2011 - Mar 31, 2015
NIH/NIBIB
Automated Segmentation of Subregions of the Medial Temporal Lobe in in vivo MRI
Role: Principal Investigator

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Saygin ZM, Kliemann D, Iglesias JE, van der Kouwe AJW, Boyd E, Reuter M, Stevens A, Van Leemput K, McKee A, Frosch MP, Fischl B, Augustinack JC. High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas. Neuroimage. 2017 Jul 15; 155:370-382. PMID: 28479476.
    View in: PubMed
  2. Pedemonte S, Pierce L, Van Leemput K. A machine learning method for fast and accurate characterization of depth-of-interaction gamma cameras. Phys Med Biol. 2017 Apr 24. PMID: 28436919.
    View in: PubMed
  3. Fuin N, Pedemonte S, Catalano OA, Izquierdo-Garcia D, Soricelli A, Salvatore M, Heberlein K, Hooker JM, Van Leemput K, Catana C. PET/MRI in the Presence of Metal Implants: Completion of the Attenuation Map from PET Emission Data. J Nucl Med. 2017 May; 58(5):840-845. PMID: 28126884.
    View in: PubMed
  4. Iglesias JE, Augustinack JC, Nguyen K, Player CM, Player A, Wright M, Roy N, Frosch MP, McKee AC, Wald LL, Fischl B, Van Leemput K. A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI. Neuroimage. 2015 Jul 15; 115:117-37. PMID: 25936807; PMCID: PMC4461537 [Available on 07/15/16].
  5. Eugenio Iglesias J, Rory Sabuncu M, Van Leemput K. A unified framework for cross-modality multi-atlas segmentation of brain MRI. Med Image Anal. 2013 Dec; 17(8):1181-91. PMID: 24001931; PMCID: PMC3888218.
  6. Iglesias JE, Sabuncu MR, Van Leemput K. Improved inference in Bayesian segmentation using Monte Carlo sampling: application to hippocampal subfield volumetry. Med Image Anal. 2013 Oct; 17(7):766-78. PMID: 23773521; PMCID: PMC3719857.
  7. Iglesias JE, Konukoglu E, Zikic D, Glocker B, Van Leemput K, Fischl B. Is synthesizing MRI contrast useful for inter-modality analysis? Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):631-8. PMID: 24505720; PMCID: PMC3977033.
  8. Iglesias JE, Sabuncu MR, Van Leemput K. A probabilistic, non-parametric framework for inter-modality label fusion. Med Image Comput Comput Assist Interv. 2013; 16(Pt 3):576-83. PMID: 24505808; PMCID: PMC3974705.
  9. Sabuncu MR, Van Leemput K. The relevance voxel machine (RVoxM): a self-tuning Bayesian model for informative image-based prediction. IEEE Trans Med Imaging. 2012 Dec; 31(12):2290-306. PMID: 23008245; PMCID: PMC3623564.
  10. Augustinack JC, Huber KE, Stevens AA, Roy M, Frosch MP, van der Kouwe AJ, Wald LL, Van Leemput K, McKee AC, Fischl B. Predicting the location of human perirhinal cortex, Brodmann's area 35, from MRI. Neuroimage. 2013 Jan 01; 64:32-42. PMID: 22960087; PMCID: PMC3508349.
  11. Iglesias JE, Sabuncu MR, Van Leemput K. Incorporating parameter uncertainty in Bayesian segmentation models: application to hippocampal subfield volumetry. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):50-7. PMID: 23286113; PMCID: PMC3623551.
  12. Iglesias JE, Sabuncu MR, Van Leemput K. A GENERATIVE MODEL FOR MULTI-ATLAS SEGMENTATION ACROSS MODALITIES. Proc IEEE Int Symp Biomed Imaging. 2012; 888-891. PMID: 23568278.
    View in: PubMed
  13. Iglesias JE, Sabuncu MR, Van Leemput K. A Generative Model for Probabilistic Label Fusion of Multimodal Data. Multimodal Brain Image Anal (2012). 2012; 7509:115-133. PMID: 25685856.
    View in: PubMed
  14. Sabuncu MR, Van Leemput K. The Relevance Voxel Machine (RVoxM): a Bayesian method for image-based prediction. Med Image Comput Comput Assist Interv. 2011; 14(Pt 3):99-106. PMID: 22003689; PMCID: PMC3266486.
  15. Laukens K, Hollunder J, Dang TH, De Jaeger G, Kuiper M, Witters E, Verschoren A, Van Leemput K. Flexible network reconstruction from relational databases with Cytoscape and CytoSQL. BMC Bioinformatics. 2010 Jul 01; 11:360. PMID: 20594316; PMCID: PMC2910028.
  16. Van Leemput K, Bakkour A, Benner T, Wiggins G, Wald LL, Augustinack J, Dickerson BC, Golland P, Fischl B. Automated segmentation of hippocampal subfields from ultra-high resolution in vivo MRI. Hippocampus. 2009 Jun; 19(6):549-57. PMID: 19405131; PMCID: PMC2739884.
  17. Fischl B, Stevens AA, Rajendran N, Yeo BT, Greve DN, Van Leemput K, Polimeni JR, Kakunoori S, Buckner RL, Pacheco J, Salat DH, Melcher J, Frosch MP, Hyman BT, Grant PE, Rosen BR, van der Kouwe AJ, Wiggins GC, Wald LL, Augustinack JC. Predicting the location of entorhinal cortex from MRI. Neuroimage. 2009 Aug 01; 47(1):8-17. PMID: 19376238; PMCID: PMC2738987.
  18. Sabuncu MR, Yeo BT, Van Leemput K, Vercauteren T, Golland P. Asymmetric image-template registration. Med Image Comput Comput Assist Interv. 2009; 12(Pt 1):565-73. PMID: 20426033; PMCID: PMC2860756.
  19. Van Leemput K. Encoding probabilistic brain atlases using Bayesian inference. IEEE Trans Med Imaging. 2009 Jun; 28(6):822-37. PMID: 19068424; PMCID: PMC3274721.
  20. Dang TH, Van Leemput K, Verschoren A, Laukens K. Prediction of kinase-specific phosphorylation sites using conditional random fields. Bioinformatics. 2008 Dec 15; 24(24):2857-64. PMID: 18940828; PMCID: PMC2639296.
  21. Autti TH, Hämäläinen J, Mannerkoski M, Van Leemput KV, Aberg LE. JNCL patients show marked brain volume alterations on longitudinal MRI in adolescence. J Neurol. 2008 Aug; 255(8):1226-30. PMID: 18677643.
    View in: PubMed
  22. Van Leemput K, Van den Bulcke T, Dhollander T, De Moor B, Marchal K, van Remortel P. Exploring the operational characteristics of inference algorithms for transcriptional networks by means of synthetic data. Artif Life. 2008; 14(1):49-63. PMID: 18171130.
    View in: PubMed
  23. Van Leemput K, Bakkour A, Benner T, Wiggins G, Wald LL, Augustinack J, Dickerson BC, Golland P, Fischl B. Model-based segmentation of hippocampal subfields in ultra-high resolution in vivo MRI. Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):235-43. PMID: 18979753; PMCID: PMC2799119.
  24. Michoel T, Maere S, Bonnet E, Joshi A, Saeys Y, Van den Bulcke T, Van Leemput K, van Remortel P, Kuiper M, Marchal K, Van de Peer Y. Validating module network learning algorithms using simulated data. BMC Bioinformatics. 2007 May 03; 8 Suppl 2:S5. PMID: 17493254; PMCID: PMC1892074.
  25. Van den Bulcke T, Van Leemput K, Naudts B, van Remortel P, Ma H, Verschoren A, De Moor B, Marchal K. SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms. BMC Bioinformatics. 2006 Jan 26; 7:43. PMID: 16438721; PMCID: PMC1373604.
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