Harvard Catalyst Profiles

Contact, publication, and social network information about Harvard faculty and fellows.

Koen Van Leemput, Ph.D.


The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. R01NS112161 (VAN LEEMPUT, KOEN) Sep 1, 2019 - May 31, 2024
    Computational imaging biomarkers of multiple sclerosis
    Role: Principal Investigator
  2. R21AG050122 (VAN LEEMPUT, KOEN) May 1, 2016 - Apr 30, 2019
    Multi-modal Prediction of Future Clinical Dementia
    Role: Principal Investigator
  3. R01EB013565 (VAN LEEMPUT, KOEN) Apr 1, 2011 - Mar 31, 2016
    Automated Segmentation of Subregions of the Medial Temporal Lobe in in vivo MRI
    Role: Principal Investigator

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Jog A, Hoopes A, Greve DN, Van Leemput K, Fischl B. PSACNN: Pulse sequence adaptive fast whole brain segmentation. Neuroimage. 2019 10 01; 199:553-569. PMID: 31129303.
    Citations: 6     Fields:    Translation:Humans
  2. Pedemonte S, Pierce L, Van Leemput K. A machine learning method for fast and accurate characterization of depth-of-interaction gamma cameras. Phys Med Biol. 2017 Oct 19; 62(21):8376-8401. PMID: 28436919.
    Citations: 1     Fields:    
  3. Saygin ZM, Kliemann D, Iglesias JE, van der Kouwe AJW, Boyd E, Reuter M, Stevens A, Van Leemput K, McKee A, Frosch MP, Fischl B, Augustinack JC. High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas. Neuroimage. 2017 07 15; 155:370-382. PMID: 28479476.
    Citations: 103     Fields:    Translation:Humans
  4. Fuin N, Pedemonte S, Catalano OA, Izquierdo-Garcia D, Soricelli A, Salvatore M, Heberlein K, Hooker JM, Van Leemput K, Catana C. PET/MRI in the Presence of Metal Implants: Completion of the Attenuation Map from PET Emission Data. J Nucl Med. 2017 05; 58(5):840-845. PMID: 28126884; PMCID: PMC5414501.
    Citations: 7     Fields:    Translation:Humans
  5. Iglesias JE, Augustinack JC, Nguyen K, Player CM, Player A, Wright M, Roy N, Frosch MP, McKee AC, Wald LL, Fischl B, Van Leemput K. A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI. Neuroimage. 2015 Jul 15; 115:117-37. PMID: 25936807.
    Citations: 341     Fields:    Translation:Humans
  6. Eugenio Iglesias J, Rory Sabuncu M, Van Leemput K. A unified framework for cross-modality multi-atlas segmentation of brain MRI. Med Image Anal. 2013 Dec; 17(8):1181-91. PMID: 24001931.
    Citations: 11     Fields:    Translation:Humans
  7. Iglesias JE, Sabuncu MR, Van Leemput K. Improved inference in Bayesian segmentation using Monte Carlo sampling: application to hippocampal subfield volumetry. Med Image Anal. 2013 Oct; 17(7):766-78. PMID: 23773521.
    Citations: 16     Fields:    Translation:Humans
  8. Iglesias JE, Konukoglu E, Zikic D, Glocker B, Van Leemput K, Fischl B. Is synthesizing MRI contrast useful for inter-modality analysis? Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):631-8. PMID: 24505720.
    Citations: 38     Fields:    Translation:Humans
  9. Iglesias JE, Sabuncu MR, Van Leemput K. A probabilistic, non-parametric framework for inter-modality label fusion. Med Image Comput Comput Assist Interv. 2013; 16(Pt 3):576-83. PMID: 24505808.
    Citations: 1     Fields:    Translation:Humans
  10. Sabuncu MR, Van Leemput K. The relevance voxel machine (RVoxM): a self-tuning Bayesian model for informative image-based prediction. IEEE Trans Med Imaging. 2012 Dec; 31(12):2290-306. PMID: 23008245.
    Citations: 15     Fields:    Translation:Humans
  11. Augustinack JC, Huber KE, Stevens AA, Roy M, Frosch MP, van der Kouwe AJ, Wald LL, Van Leemput K, McKee AC, Fischl B. Predicting the location of human perirhinal cortex, Brodmann's area 35, from MRI. Neuroimage. 2013 Jan 01; 64:32-42. PMID: 22960087.
    Citations: 46     Fields:    Translation:Humans
  12. Iglesias JE, Sabuncu MR, Van Leemput K. Incorporating parameter uncertainty in Bayesian segmentation models: application to hippocampal subfield volumetry. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):50-7. PMID: 23286113.
    Citations: 2     Fields:    Translation:Humans
  13. Iglesias JE, Sabuncu MR, Van Leemput K. A GENERATIVE MODEL FOR MULTI-ATLAS SEGMENTATION ACROSS MODALITIES. Proc IEEE Int Symp Biomed Imaging. 2012; 888-891. PMID: 23568278.
    Citations: 15     
  14. Iglesias JE, Sabuncu MR, Van Leemput K. A Generative Model for Probabilistic Label Fusion of Multimodal Data. Multimodal Brain Image Anal (2012). 2012; 7509:115-133. PMID: 25685856.
    Citations: 6     
  15. Sabuncu MR, Van Leemput K. The Relevance Voxel Machine (RVoxM): a Bayesian method for image-based prediction. Med Image Comput Comput Assist Interv. 2011; 14(Pt 3):99-106. PMID: 22003689.
    Citations: 10     Fields:    Translation:Humans
  16. Laukens K, Hollunder J, Dang TH, De Jaeger G, Kuiper M, Witters E, Verschoren A, Van Leemput K. Flexible network reconstruction from relational databases with Cytoscape and CytoSQL. BMC Bioinformatics. 2010 Jul 01; 11:360. PMID: 20594316.
    Citations:    Fields:    Translation:HumansAnimals
  17. Van Leemput K, Bakkour A, Benner T, Wiggins G, Wald LL, Augustinack J, Dickerson BC, Golland P, Fischl B. Automated segmentation of hippocampal subfields from ultra-high resolution in vivo MRI. Hippocampus. 2009 Jun; 19(6):549-57. PMID: 19405131.
    Citations: 197     Fields:    Translation:Humans
  18. Fischl B, Stevens AA, Rajendran N, Yeo BT, Greve DN, Van Leemput K, Polimeni JR, Kakunoori S, Buckner RL, Pacheco J, Salat DH, Melcher J, Frosch MP, Hyman BT, Grant PE, Rosen BR, van der Kouwe AJ, Wiggins GC, Wald LL, Augustinack JC. Predicting the location of entorhinal cortex from MRI. Neuroimage. 2009 Aug 01; 47(1):8-17. PMID: 19376238; PMCID: PMC2738987.
    Citations: 47     Fields:    Translation:Humans
  19. Sabuncu MR, Yeo BT, Van Leemput K, Vercauteren T, Golland P. Asymmetric image-template registration. Med Image Comput Comput Assist Interv. 2009; 12(Pt 1):565-73. PMID: 20426033.
    Citations: 15     Fields:    Translation:Humans
  20. Van Leemput K. Encoding probabilistic brain atlases using Bayesian inference. IEEE Trans Med Imaging. 2009 Jun; 28(6):822-37. PMID: 19068424.
    Citations: 30     Fields:    Translation:Humans
  21. Dang TH, Van Leemput K, Verschoren A, Laukens K. Prediction of kinase-specific phosphorylation sites using conditional random fields. Bioinformatics. 2008 Dec 15; 24(24):2857-64. PMID: 18940828.
    Citations: 23     Fields:    Translation:Cells
  22. Autti TH, Hämäläinen J, Mannerkoski M, Van Leemput KV, Aberg LE. JNCL patients show marked brain volume alterations on longitudinal MRI in adolescence. J Neurol. 2008 Aug; 255(8):1226-30. PMID: 18677643.
    Citations: 11     Fields:    Translation:Humans
  23. Van Leemput K, Van den Bulcke T, Dhollander T, De Moor B, Marchal K, van Remortel P. Exploring the operational characteristics of inference algorithms for transcriptional networks by means of synthetic data. Artif Life. 2008; 14(1):49-63. PMID: 18171130.
    Citations:    Fields:    Translation:Cells
  24. Van Leemput K, Bakkour A, Benner T, Wiggins G, Wald LL, Augustinack J, Dickerson BC, Golland P, Fischl B. Model-based segmentation of hippocampal subfields in ultra-high resolution in vivo MRI. Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):235-43. PMID: 18979753.
    Citations: 16     Fields:    Translation:Humans
  25. Michoel T, Maere S, Bonnet E, Joshi A, Saeys Y, Van den Bulcke T, Van Leemput K, van Remortel P, Kuiper M, Marchal K, Van de Peer Y. Validating module network learning algorithms using simulated data. BMC Bioinformatics. 2007 May 03; 8 Suppl 2:S5. PMID: 17493254.
    Citations: 15     Fields:    Translation:Cells
  26. Van den Bulcke T, Van Leemput K, Naudts B, van Remortel P, Ma H, Verschoren A, De Moor B, Marchal K. SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms. BMC Bioinformatics. 2006 Jan 26; 7:43. PMID: 16438721.
    Citations: 88     Fields:    Translation:Cells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.