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Last Name

profilePaolo Nunzio Ciccarese, Ph.D.

TitleAssistant Professor of Neurology
InstitutionMassachusetts General Hospital
AddressPartners Research Building
65 Landsdowne St
Cambridge MA 02139
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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Smith B, Arabandi S, Brochhausen M, Calhoun M, Ciccarese P, Doyle S, Gibaud B, Goldberg I, Kahn CE, Overton J, Tomaszewski J, Gurcan M. Biomedical imaging ontologies: A survey and proposal for future work. J Pathol Inform. 2015; 6:37. PMID: 26167381; PMCID: PMC4485195.
  2. Clark T, Ciccarese PN, Goble CA. Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications. J Biomed Semantics. 2014; 5:28. PMID: 26261718; PMCID: PMC4530550.
  3. Merrill E, Corlosquet S, Ciccarese P, Clark T, Das S. Semantic Web repositories for genomics data using the eXframe platform. J Biomed Semantics. 2014; 5(Suppl 1 Proceedings of the Bio-Ontologies Spec Interest G):S3. PMID: 25093072; PMCID: PMC4108874.
  4. Ciccarese P, Soiland-Reyes S, Belhajjame K, Gray AJ, Goble C, Clark T. PAV ontology: provenance, authoring and versioning. J Biomed Semantics. 2013 Nov 22; 4(1):37. PMID: 24267948; PMCID: PMC4177195.
  5. Comeau DC, Islamaj Dogan R, Ciccarese P, Cohen KB, Krallinger M, Leitner F, Lu Z, Peng Y, Rinaldi F, Torii M, Valencia A, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ. BioC: a minimalist approach to interoperability for biomedical text processing. Database (Oxford). 2013; 2013:bat064. PMID: 24048470; PMCID: PMC3889917.
  6. Paolo Ciccarese, Silvio Peroni. The Collections Ontology: creating and handling collections in OWL 2 DL frameworks. Semantic Web Journal. 2013.
  7. Paolo Ciccarese, David Shotton, Silvio Peroni and Tim Clark. CiTO + SWAN: The Web Semantics of Bibliographic Records, Citations, Evidence and Discourse Relationships. Semantic Web Journal. 2013.
  8. Ciccarese P, Ocana M, Clark T. Open semantic annotation of scientific publications using DOMEO. J Biomed Semantics. 2012 Apr 24; 3 Suppl 1:S1. PMID: 22541592; PMCID: PMC3337259.
  9. Bandrowski AE, Cachat J, Li Y, Müller HM, Sternberg PW, Ciccarese P, Clark T, Marenco L, Wang R, Astakhov V, Grethe JS, Martone ME. A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. Database (Oxford). 2012; 2012:bas005. PMID: 22434839; PMCID: PMC3308161.
  10. Ciccarese P, Ocana M, Garcia Castro LJ, Das S, Clark T. An open annotation ontology for science on web 3.0. J Biomed Semantics. 2011 May 17; 2 Suppl 2:S4. PMID: 21624159; PMCID: PMC3102893.
  11. Ciccarese P, Wu E, Wong G, Ocana M, Kinoshita J, Ruttenberg A, Clark T. The SWAN biomedical discourse ontology. J Biomed Inform. 2008 Oct; 41(5):739-51. PMID: 18583197; PMCID: PMC4536833.
  12. Quaglini S, Ciccarese P. Models for guideline representation. Neurol Sci. 2006 Jun; 27 Suppl 3:S240-4. PMID: 16752058.
    View in: PubMed
  13. Ciccarese P, Larizza C. A framework for temporal data processing and abstractions. AMIA Annu Symp Proc. 2006; 146-50. PMID: 17238320; PMCID: PMC1839476.
  14. Ciccarese P, Caffi E, Quaglini S, Stefanelli M. Architectures and tools for innovative Health Information Systems: the Guide Project. Int J Med Inform. 2005 Aug; 74(7-8):553-62. PMID: 16043084.
    View in: PubMed
  15. Ciccarese P, Caffi E, Boiocchi L, Quaglini S, Stefanelli M. A guideline management system. Stud Health Technol Inform. 2004; 107(Pt 1):28-32. PMID: 15360768.
    View in: PubMed
  16. Quaglini S, Ciccarese P, Micieli G, Cavallini A. Non-compliance with guidelines: motivations and consequences in a case study. Stud Health Technol Inform. 2004; 101:75-87. PMID: 15537207.
    View in: PubMed
  17. Kumar A, Ciccarese P, Smith B, Piazza M. Context-based task ontologies for clinical guidelines. Stud Health Technol Inform. 2004; 102:81-94. PMID: 15853265.
    View in: PubMed
  18. Kumar A, Quaglini S, Stefanelli M, Ciccarese P, Caffi E. Modular representation of the guideline text: an approach for maintaining and updating the content of medical education. Med Inform Internet Med. 2003 Jun; 28(2):99-115. PMID: 14692587.
    View in: PubMed
  19. Kumar A, Ciccarese P, Quaglini S, Stefanelli M, Caffi E, Boiocchi L. Relating UMLS semantic types and task-based ontology to computer-interpretable clinical practice guidelines. Stud Health Technol Inform. 2003; 95:469-74. PMID: 14664031.
    View in: PubMed
  20. Peleg M, Tu S, Bury J, Ciccarese P, Fox J, Greenes RA, Hall R, Johnson PD, Jones N, Kumar A, Miksch S, Quaglini S, Seyfang A, Shortliffe EH, Stefanelli M. Comparing computer-interpretable guideline models: a case-study approach. J Am Med Inform Assoc. 2003 Jan-Feb; 10(1):52-68. PMID: 12509357; PMCID: PMC150359.
  21. Alexandre P, Ciccarese P, Breslin J, Clark T. ISWC 2009 SWASD (Workshop On Semantic Web Applications in Scientific Discourse). SWAN/SIOC: Aligning Scientific Discourse Representation and Social Semantics.
  22. Ciccarese P, Ocana M, Das S, Clark T. Proceedings Bio-ontologies 2010. AO: An Open Annotation Ontology for Science on the Web.
  23. Ciccarese P, Ocana M, Clark, T. Proceedings Bio-Ontologies 2011. DOMEO: a web-based tool for semantic annotation of online documents.
  24. Clark T, Ciccarese P. 2nd INCF Congress of Neuroinformatics. An agile model for semantic integration of biomedical web communities.
  25. Attanasio G, Ciccarese P, Wu E, Clark T, Pecis E. Proceedings of 3rd Tinnitus Research Initiative Meeting. Tinnitusbook: a proposal for an advanced scientific web community for tinnitus research.
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