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Kavishwar Balwant Wagholikar, Ph.D., M.B.,B.S.

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2014 - 2016
K99/R00 National Library of Medicine, NIH

The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. R01HL151643 (WAGHOLIKAR, KAVISHWAR B.) Jun 15, 2020 - May 31, 2025
    A framework to stratify patient cohorts for clinical management
    Role: Principal Investigator
  2. R00LM011575 (WAGHOLIKAR, KAVISHWAR B.) Feb 1, 2016 - Jan 31, 2019
    A Framework to Enhance Decision Support by Invoking NLP: Methods and Applications
    Role: Principal Investigator
  3. K99LM011575 (WAGHOLIKAR, KAVISHWAR B.) Feb 1, 2014 - Jan 31, 2016
    A Framework to Enhance Decision Support by Invoking NLP: Methods and Applications
    Role: Principal Investigator

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Desai AS, Maclean T, Blood AJ, Bosque-Hamilton J, Dunning J, Fischer C, Fera L, Smith KV, Wagholikar K, Zelle D, Gaziano T, Plutzky J, Scirica B, MacRae CA. Remote Optimization of Guideline-Directed Medical Therapy in Patients With Heart Failure With Reduced Ejection Fraction. JAMA Cardiol. 2020 Sep 16. PMID: 32936209.
    Citations:    Fields:    
  2. Wagholikar KB, Joshi SV, Pai Vernekar VV, Ostrovsky Y, Desai SD, Magdum PB, Wakle SB, Jain S, Zagade A, Patel R, Murphy SN. Cloud Services for Patient Cohort Identification Using the Informatics for Integrating Biology and the Bedside Platform. Biomed Res Int. 2020; 2020:2851713. PMID: 32724799.
    Citations:    Fields:    
  3. Estiri H, Strasser ZH, Klann JG, McCoy TH, Wagholikar KB, Vasey S, Castro VM, Murphy ME, Murphy SN. Transitive Sequencing Medical Records for Mining Predictive and Interpretable Temporal Representations. Patterns (N Y). 2020 Jul 10; 1(4):100051. PMID: 32835307.
  4. Wagholikar KB, Estiri H, Murphy M, Murphy SN. Polar labeling: silver standard algorithm for training disease classifiers. Bioinformatics. 2020 05 01; 36(10):3200-3206. PMID: 32049335.
    Citations: 2     Fields:    
  5. Blood AJ, Fischer CM, Fera LE, MacLean TE, Smith KV, Dunning JR, Bosque-Hamilton JW, Aronson SJ, Gaziano TA, MacRae CA, Matta LS, Mercurio-Pinto AA, Murphy SN, Scirica BM, Wagholikar K, Desai AS. Rationale and design of a navigator-driven remote optimization of guideline-directed medical therapy in patients with heart failure with reduced ejection fraction. Clin Cardiol. 2020 Jan; 43(1):4-13. PMID: 31725920.
    Citations: 1     Fields:    
  6. Wagholikar KB, Fischer CM, Goodson AP, Herrick CD, Maclean TE, Smith KV, Fera L, Gaziano TA, Dunning JR, Bosque-Hamilton J, Matta L, Toscano E, Richter B, Ainsworth L, Oates MF, Aronson S, MacRae CA, Scirica BM, Desai AS, Murphy SN. Phenotyping to Facilitate Accrual for a Cardiovascular Intervention. J Clin Med Res. 2019 Jun; 11(6):458-463. PMID: 31143314.
    Citations: 2     
  7. Wagholikar KB, Ainsworth L, Vernekar VP, Pathak A, Glynn C, Zelle D, Zagade A, Karipineni N, Herrick CD, McPartlin M, Bui TV, Mendis M, Klann J, Oates M, Gordon W, Cannon C, Patel R, Aronson SJ, MacRae CA, Scirica BM, Murphy SN. Extending i2b2 into a framework for semantic abstraction of EHR to facilitate rapid development and portability of Health IT applications. AMIA Jt Summits Transl Sci Proc. 2019; 2019:370-378. PMID: 31258990.
    Citations: 2     
  8. Klann JG, Phillips LC, Herrick C, Joss MAH, Wagholikar KB, Murphy SN. Web services for data warehouses: OMOP and PCORnet on i2b2. J Am Med Inform Assoc. 2018 10 01; 25(10):1331-1338. PMID: 30085008.
    Citations: 2     Fields:    Translation:Humans
  9. Wagholikar KB, Fischer CM, Goodson A, Herrick CD, Rees M, Toscano E, MacRae CA, Scirica BM, Desai AS, Murphy SN. Extraction of Ejection Fraction from Echocardiography Notes for Constructing a Cohort of Patients having Heart Failure with reduced Ejection Fraction (HFrEF). J Med Syst. 2018 Sep 25; 42(11):209. PMID: 30255347.
    Citations: 7     Fields:    Translation:Humans
  10. Wagholikar KB, Dessai P, Sanz J, Mendis ME, Bell DS, Murphy SN. Implementation of informatics for integrating biology and the bedside (i2b2) platform as Docker containers. BMC Med Inform Decis Mak. 2018 07 16; 18(1):66. PMID: 30012140.
    Citations: 4     Fields:    Translation:Humans
  11. Wagholikar KB, Mendis M, Dessai P, Sanz J, Law S, Gilson M, Sanders S, Vangala M, Bell DS, Murphy SN. Automating Installation of the Integrating Biology and the Bedside (i2b2) Platform. Biomed Inform Insights. 2018; 10:1178222618777749. PMID: 29887730.
    Citations: 5     
  12. Raisaro JL, Klann JG, Wagholikar KB, Estiri H, Hubaux JP, Murphy SN. Feasibility of Homomorphic Encryption for Sharing I2B2 Aggregate-Level Data in the Cloud. AMIA Jt Summits Transl Sci Proc. 2018; 2017:176-185. PMID: 29888067.
    Citations: 1     
  13. Ravikumar KE, MacLaughlin KL, Scheitel MR, Kessler M, Wagholikar KB, Liu H, Chaudhry R. Improving the Accuracy of a Clinical Decision Support System for Cervical Cancer Screening and Surveillance. Appl Clin Inform. 2018 01; 9(1):62-71. PMID: 29365341.
    Citations:    Fields:    Translation:HumansPHPublic Health
  14. MacLaughlin KL, Kessler ME, Komandur Elayavilli R, Hickey BC, Scheitel MR, Wagholikar KB, Liu H, Kremers WK, Chaudhry R. Impact of Patient Reminders on Papanicolaou Test Completion for High-Risk Patients Identified by a Clinical Decision Support System. J Womens Health (Larchmt). 2018 05; 27(5):569-574. PMID: 29297754.
    Citations: 2     Fields:    Translation:HumansPHPublic Health
  15. Weng WH, Wagholikar KB, McCray AT, Szolovits P, Chueh HC. Medical subdomain classification of clinical notes using a machine learning-based natural language processing approach. BMC Med Inform Decis Mak. 2017 Dec 01; 17(1):155. PMID: 29191207.
    Citations: 9     Fields:    Translation:Humans
  16. Wagholikar KB, Jain R, Oliveira E, Mandel J, Klann J, Colas R, Patil P, Yadav K, Mandl KD, Carton T, Murphy SN. Evolving Research Data Sharing Networks to Clinical App Sharing Networks. AMIA Jt Summits Transl Sci Proc. 2017; 2017:302-307. PMID: 28815145.
    Citations: 4     
  17. Wagholikar KB, Mandel JC, Klann JG, Wattanasin N, Mendis M, Chute CG, Mandl KD, Murphy SN. SMART-on-FHIR implemented over i2b2. J Am Med Inform Assoc. 2017 03 01; 24(2):398-402. PMID: 27274012.
    Citations: 17     Fields:    Translation:Humans
  18. Ravikumar KE, Wagholikar KB, Li D, Kocher JP, Liu H. Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature. BMC Bioinformatics. 2015 Jun 06; 16:185. PMID: 26047637.
    Citations: 5     Fields:    Translation:Humans
  19. Wagholikar KB, MacLaughlin KL, Chute CG, Greenes RA, Liu H, Chaudhry R. Granular Quality Reporting for Cervical Cytology Testing. AMIA Jt Summits Transl Sci Proc. 2015; 2015:178-82. PMID: 26306264.
    Citations: 2     
  20. Wagholikar KB, MacLaughlin KL, Casey PM, Kastner TM, Henry MR, Hankey RA, Peters SG, Greenes RA, Chute CG, Liu H, Chaudhry R. Automated recommendation for cervical cancer screening and surveillance. Cancer Inform. 2014; 13(Suppl 3):1-6. PMID: 25368505.
    Citations: 3     
  21. Wagholikar KB, Hankey RA, Decker LK, Cha SS, Greenes RA, Liu H, Chaudhry R. Evaluation of the effect of decision support on the efficiency of primary care providers in the outpatient practice. J Prim Care Community Health. 2015 Jan; 6(1):54-60. PMID: 25155103.
    Citations: 2     Fields:    Translation:Humans
  22. Torii M, Wagholikar K, Liu H. Detecting concept mentions in biomedical text using hidden Markov model: multiple concept types at once or one at a time? J Biomed Semantics. 2014 Jan 17; 5(1):3. PMID: 24438362.
    Citations: 4     Fields:    
  23. Ravikumar KE, Wagholikar KB, Liu H. Towards pathway curation through literature mining--a case study using PharmGKB. Pac Symp Biocomput. 2014; 352-63. PMID: 24297561.
    Citations: 3     Fields:    Translation:Humans
  24. Xu B, Lin H, Wagholikar KB, Yang Z, Liu H. Identifying protein complexes with fuzzy machine learning model. Proteome Sci. 2013 Nov 07; 11(Suppl 1):S21. PMID: 24565338.
    Citations: 1     
  25. Wu ST, Sohn S, Ravikumar KE, Wagholikar K, Jonnalagadda SR, Liu H, Juhn YJ. Automated chart review for asthma cohort identification using natural language processing: an exploratory study. Ann Allergy Asthma Immunol. 2013 Nov; 111(5):364-9. PMID: 24125142.
    Citations: 25     Fields:    Translation:Humans
  26. Sohn S, Clark C, Halgrim SR, Murphy SP, Jonnalagadda SR, Wagholikar KB, Wu ST, Chute CG, Liu H. Analysis of cross-institutional medication description patterns in clinical narratives. Biomed Inform Insights. 2013; 6(Suppl 1):7-16. PMID: 23847423.
    Citations: 3     
  27. Wagholikar KB, MacLaughlin KL, Kastner TM, Casey PM, Henry M, Greenes RA, Liu H, Chaudhry R. Formative evaluation of the accuracy of a clinical decision support system for cervical cancer screening. J Am Med Inform Assoc. 2013 Jul-Aug; 20(4):749-57. PMID: 23564631.
    Citations: 13     Fields:    Translation:Humans
  28. Sohn S, Wagholikar KB, Li D, Jonnalagadda SR, Tao C, Komandur Elayavilli R, Liu H. Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification. J Am Med Inform Assoc. 2013 Sep-Oct; 20(5):836-42. PMID: 23558168.
    Citations: 21     Fields:    Translation:Humans
  29. Wagholikar K, Sohn S, Wu S, Kaggal V, Buehler S, Greenes RA, Wu TT, Larson D, Liu H, Chaudhry R, Boardman L. Workflow-based Data Reconciliation for Clinical Decision Support: Case of Colorectal Cancer Screening and Surveillance. AMIA Jt Summits Transl Sci Proc. 2013; 2013:269-73. PMID: 24303280.
    Citations: 4     
  30. Liu H, Bielinski SJ, Sohn S, Murphy S, Wagholikar KB, Jonnalagadda SR, Ravikumar KE, Wu ST, Kullo IJ, Chute CG. An information extraction framework for cohort identification using electronic health records. AMIA Jt Summits Transl Sci Proc. 2013; 2013:149-53. PMID: 24303255.
    Citations: 41     
  31. Wagholikar KB, Torii M, Jonnalagadda SR, Liu H. Pooling annotated corpora for clinical concept extraction. J Biomed Semantics. 2013 Jan 08; 4(1):3. PMID: 23294871.
    Citations: 3     Fields:    
  32. Liu H, Wu ST, Li D, Jonnalagadda S, Sohn S, Wagholikar K, Haug PJ, Huff SM, Chute CG. Towards a semantic lexicon for clinical natural language processing. AMIA Annu Symp Proc. 2012; 2012:568-76. PMID: 23304329.
    Citations: 5     Fields:    Translation:Humans
  33. Jonnalagadda SR, Li D, Sohn S, Wu ST, Wagholikar K, Torii M, Liu H. Coreference analysis in clinical notes: a multi-pass sieve with alternate anaphora resolution modules. J Am Med Inform Assoc. 2012 Sep-Oct; 19(5):867-74. PMID: 22707745.
    Citations: 16     Fields:    Translation:Humans
  34. Wagholikar KB, MacLaughlin KL, Henry MR, Greenes RA, Hankey RA, Liu H, Chaudhry R. Clinical decision support with automated text processing for cervical cancer screening. J Am Med Inform Assoc. 2012 Sep-Oct; 19(5):833-9. PMID: 22542812.
    Citations: 26     Fields:    Translation:HumansPHPublic Health
  35. Wagholikar K, Torii M, Jonnalagadda S, Liu H. Feasibility of pooling annotated corpora for clinical concept extraction. AMIA Jt Summits Transl Sci Proc. 2012; 2012:38. PMID: 22779047.
    Citations: 6     
  36. Liu H, Wagholikar K, Wu ST. Using SNOMED-CT to encode summary level data - a corpus analysis. AMIA Jt Summits Transl Sci Proc. 2012; 2012:30-7. PMID: 22779045.
    Citations: 6     
  37. Sohn S, Torii M, Li D, Wagholikar K, Wu S, Liu H. A hybrid approach to sentiment sentence classification in suicide notes. Biomed Inform Insights. 2012; 5(Suppl. 1):43-50. PMID: 22879759.
    Citations: 12     
  38. Wagholikar KB, Sundararajan V, Deshpande AW. Modeling paradigms for medical diagnostic decision support: a survey and future directions. J Med Syst. 2012 Oct; 36(5):3029-49. PMID: 21964969.
    Citations: 17     Fields:    
  39. Torii M, Wagholikar K, Liu H. Using machine learning for concept extraction on clinical documents from multiple data sources. J Am Med Inform Assoc. 2011 Sep-Oct; 18(5):580-7. PMID: 21709161.
    Citations: 41     Fields:    Translation:Humans
  40. Wagholikar K, Mangrulkar S, Deshpande A, Sundararajan V. Evaluation of fuzzy relation method for medical decision support. J Med Syst. 2012 Feb; 36(1):233-9. PMID: 20703722.
    Citations: 3     Fields:    Translation:Humans
  41. Wagholikar KB, Vijayraghavan S, Deshpande AW. Fuzzy Naive Bayesian model for medical diagnostic decision support. Annu Int Conf IEEE Eng Med Biol Soc. 2009; 2009:3409-12. PMID: 19963578.
    Citations: 2     Translation:Humans
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.