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Benoit Scherrer, Ph.D.

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Biography
2005 - 2008
National Ph.D. Grant
2008
Young Investigator Best Paper Award
2009
Best PhD Thesis in Applied Mathematics
2011
Trainee Abstract Award
2012
Best Student Paper Award (co-author)
2012
Magna Cum Laude Merit Award
2012
Magna Cum Laude Merit Award
2012
Elsevier/MEDIA-MICCAI’12 Best Paper Award

Research
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. (Benoit Scherrer) Feb 1, 2017 - Jan 31, 2019
    Translational Research Program, Innovator Grant (Internal)
    In-vivo assessment of the temporal window of vulnerability in mild traumatic brain injury (mTBI)
    Role Description: To test and validate novel magnetic resonance imaging (MRI) protocols and analysis techniques with the aim of non-invasively characterizing the temporal window of vulnerability following mild traumatic brain injury (mTBI).
    Role: PI
  2. (Benoit Scherrer) Aug 1, 2015 - Aug 30, 2016
    CTREC (BCH, Internal)
    K-to-R Bridge Merit Award : Accelerated diffusion MR imaging of brain tissue compartments
    Role Description: The objective of this award is to support young investigators of significant promise who have not yet secured NIH R01 funding
    Role: PI
  3. (Benoit Scherrer) Apr 1, 2015 - Sep 30, 2016
    TRP (BCH, Internal)
    Toward in vivo neuroimaging biomarkers of concussion : Evaluation with a mouse model of repetitive mild traumatic brain injury (rmTBI)
    Role Description: The overall objective is to test and validate the ability of diffusion compartment imaging (DCI) and magnetic resonance spectroscopy (MRS) to provide early insight into the cascade of biological mechanisms after mTBI
    Role: PI

Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
List All   |   Timeline
  1. Baumer FM, Peters JM, Clancy S, Prohl AK, Prabhu SP, Scherrer B, Jansen FE, Braun KPJ, Sahin M, Stamm A, Warfield SK. Corpus Callosum White Matter Diffusivity Reflects Cumulative Neurological Comorbidity in Tuberous Sclerosis Complex. Cereb Cortex. 2018 Oct 01; 28(10):3665-3672. PMID: 29939236.
    View in: PubMed
  2. Srivastava S, Prohl AK, Scherrer B, Kapur K, Krueger DA, Warfield SK, Sahin M. Cerebellar volume as an imaging marker of development in infants with tuberous sclerosis complex. Neurology. 2018 Apr 24; 90(17):e1493-e1500. PMID: 29572283.
    View in: PubMed
  3. MacDougall RD, Scherrer B, Don S. Development of a tool to aid the radiologic technologist using augmented reality and computer vision. Pediatr Radiol. 2018 01; 48(1):141-145. PMID: 28866805.
    View in: PubMed
  4. Eaton-Rosen Z, Scherrer B, Melbourne A, Ourselin S, Neil JJ, Warfield SK. Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI. Neuroimage. 2017 11 15; 162:65-72. PMID: 28801253.
    View in: PubMed
  5. Ferizi U, Scherrer B, Schneider T, Alipoor M, Eufracio O, Fick RHJ, Deriche R, Nilsson M, Loya-Olivas AK, Rivera M, Poot DHJ, Ramirez-Manzanares A, Marroquin JL, Rokem A, Pötter C, Dougherty RF, Sakaie K, Wheeler-Kingshott C, Warfield SK, Witzel T, Wald LL, Raya JG, Alexander DC. Diffusion MRI microstructure models with in vivo human brain Connectome data: results from a multi-group comparison. NMR Biomed. 2017 Sep; 30(9). PMID: 28643354.
    View in: PubMed
  6. Marami B, Mohseni Salehi SS, Afacan O, Scherrer B, Rollins CK, Yang E, Estroff JA, Warfield SK, Gholipour A. Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis. Neuroimage. 2017 08 01; 156:475-488. PMID: 28433624.
    View in: PubMed
  7. Hedouin R, Commowick O, Bannier E, Scherrer B, Taquet M, Warfield SK, Barillot C. Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions. IEEE Trans Med Imaging. 2017 05; 36(5):1106-1115. PMID: 28092527.
    View in: PubMed
  8. Marami B, Scherrer B, Afacan O, Warfield SK, Gholipour A. Motion-Robust Reconstruction based on Simultaneous Multi-Slice Registration for Diffusion-Weighted MRI of Moving Subjects. Med Image Comput Comput Assist Interv. 2016 Oct; 9902:544-552. PMID: 28127590.
    View in: PubMed
  9. Marami B, Scherrer B, Afacan O, Erem B, Warfield SK, Gholipour A. Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking. IEEE Trans Med Imaging. 2016 10; 35(10):2258-2269. PMID: 27834639.
    View in: PubMed
  10. Chamberland M, Scherrer B, Prabhu SP, Madsen J, Fortin D, Whittingstall K, Descoteaux M, Warfield SK. Active delineation of Meyer's loop using oriented priors through MAGNEtic tractography (MAGNET). Hum Brain Mapp. 2017 01; 38(1):509-527. PMID: 27647682.
    View in: PubMed
  11. Marami B, Scherrer B, Afacan O, Erem B, Warfield S, Gholipour A. Motion-robust diffusion-weighted brain MRI reconstruction through slice-level registration-based motion tracking. IEEE Trans Med Imaging. 2016 Apr 20. PMID: 28113889.
    View in: PubMed
  12. Gholipour A, Afacan O, Aganj I, Scherrer B, Prabhu SP, Sahin M, Warfield SK. Super-resolution reconstruction in frequency, image, and wavelet domains to reduce through-plane partial voluming in MRI. Med Phys. 2015 Dec; 42(12):6919-32. PMID: 26632048; PMCID: PMC4644155 [Available on 12/01/16].
  13. Taquet M, Scherrer B, Boumal N, Peters JM, Macq B, Warfield SK. Improved fidelity of brain microstructure mapping from single-shell diffusion MRI. Med Image Anal. 2015 Dec; 26(1):268-86. PMID: 26529580.
    View in: PubMed
  14. Peters JM, Prohl AK, Tomas-Fernandez XK, Taquet M, Scherrer B, Prabhu SP, Lidov HG, Singh JM, Jansen FE, Braun KP, Sahin M, Warfield SK, Stamm A. Tubers are neither static nor discrete: Evidence from serial diffusion tensor imaging. Neurology. 2015 Nov 03; 85(18):1536-45. PMID: 26432846; PMCID: PMC4642145 [Available on 11/03/16].
  15. Scherrer B, Schwartzman A, Taquet M, Sahin M, Prabhu SP, Warfield SK. Characterizing brain tissue by assessment of the distribution of anisotropic microstructural environments in diffusion-compartment imaging (DIAMOND). Magn Reson Med. 2016 09; 76(3):963-77. PMID: 26362832.
    View in: PubMed
  16. Scherrer B, Afacan O, Taquet M, Prabhu SP, Gholipour A, Warfield SK. Accelerated High Spatial Resolution Diffusion-Weighted Imaging. Inf Process Med Imaging. 2015; 24:69-81. PMID: 26167096; PMCID: PMC4495974.
  17. Taquet M, Scherrer B, Peters JM, Prabhu SP, Warfield SK. A fully Bayesian inference framework for population studies of the brain microstructure. Med Image Comput Comput Assist Interv. 2014; 17(Pt 1):25-32. PMID: 25333097; PMCID: PMC4209905.
  18. Taquet M, Scherrer B, Commowick O, Peters JM, Sahin M, Macq B, Warfield SK. A mathematical framework for the registration and analysis of multi-fascicle models for population studies of the brain microstructure. IEEE Trans Med Imaging. 2014 Feb; 33(2):504-17. PMID: 24235301; PMCID: PMC3984609.
  19. Peters JM, Taquet M, Prohl AK, Scherrer B, van Eeghen AM, Prabhu SP, Sahin M, Warfield SK. Diffusion tensor imaging and related techniques in tuberous sclerosis complex: review and future directions. Future Neurol. 2013 Sep; 8(5):583-597. PMID: 24489482.
    View in: PubMed
  20. Hammond DK, Scherrer B, Warfield SK. Cortical graph smoothing: a novel method for exploiting DWI-derived anatomical brain connectivity to improve EEG source estimation. IEEE Trans Med Imaging. 2013 Oct; 32(10):1952-63. PMID: 23807436; PMCID: PMC3901841.
  21. Scherrer B, Schwartzman A, Taquet M, Prabhu SP, Sahin M, Akhondi-Asl A, Warfield SK. Characterizing the distribution of anisotropic micro-structural environments with diffusion-weighted imaging (DIAMOND). Med Image Comput Comput Assist Interv. 2013; 16(Pt 3):518-26. PMID: 24505801; PMCID: PMC4029840.
  22. Scherrer B, Taquet M, Warfield SK. Reliable selection of the number of fascicles in diffusion images by estimation of the generalization error. Inf Process Med Imaging. 2013; 23:742-53. PMID: 24684014; PMCID: PMC4138217.
  23. Taquet M, Scherrer B, Boumal N, Macq B, Warfield SK. Estimation of a multi-fascicle model from single B-value data with a population-informed prior. Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):695-702. PMID: 24505728; PMCID: PMC4029842.
  24. Scherrer B, Warfield SK. Parametric representation of multiple white matter fascicles from cube and sphere diffusion MRI. PLoS One. 2012; 7(11):e48232. PMID: 23189128; PMCID: PMC3506641.
  25. Scherrer B, Gholipour A, Warfield SK. Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions. Med Image Anal. 2012 Oct; 16(7):1465-76. PMID: 22770597; PMCID: PMC3448812.
  26. Lewis WW, Sahin M, Scherrer B, Peters JM, Suarez RO, Vogel-Farley VK, Jeste SS, Gregas MC, Prabhu SP, Nelson CA, Warfield SK. Impaired language pathways in tuberous sclerosis complex patients with autism spectrum disorders. Cereb Cortex. 2013 Jul; 23(7):1526-32. PMID: 22661408; PMCID: PMC3673171.
  27. Akhondi-Asl A, Hans A, Scherrer B, Peters JM, Warfield SK. WHOLE BRAIN GROUP NETWORK ANALYSIS USING NETWORK BIAS AND VARIANCE PARAMETERS. Proc IEEE Int Symp Biomed Imaging. 2012 May; 2012:1511-1514. PMID: 26539256.
    View in: PubMed
  28. Scherrer B, Gholipour A, Warfield SK. Super-Resolution Reconstruction of Diffusion-Weighted Images from Distortion Compensated Orthogonal Anisotropic Acquisitions. Proc Workshop Math Methods Biomed Image Analysis. 2012 Jan; 2012:249-254. PMID: 25356442.
    View in: PubMed
  29. Peters JM, Sahin M, Vogel-Farley VK, Jeste SS, Nelson CA, Gregas MC, Prabhu SP, Scherrer B, Warfield SK. Loss of white matter microstructural integrity is associated with adverse neurological outcome in tuberous sclerosis complex. Acad Radiol. 2012 Jan; 19(1):17-25. PMID: 22142677; PMCID: PMC3343770.
  30. Taquet M, Scherrer B, Commowick O, Peters J, Sahin M, Macq B, Warfield SK. Registration and analysis of white matter group differences with a multi-fiber model. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):313-20. PMID: 23286145; PMCID: PMC3671390.
  31. Gholipour A, Kehtarnavaz N, Scherrer B, Warfield SK. On the accuracy of unwarping techniques for the correction of susceptibility-induced geometric distortion in magnetic resonance Echo-planar images. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:6997-7000. PMID: 22255949; PMCID: PMC3675776.
  32. Scherrer B, Gholipour A, Warfield SK. Super-resolution in diffusion-weighted imaging. Med Image Comput Comput Assist Interv. 2011; 14(Pt 2):124-32. PMID: 21995021; PMCID: PMC3687082.
  33. Scherrer B, Forbes F, Garbay C, Dojat M. Distributed local MRF models for tissue and structure brain segmentation. IEEE Trans Med Imaging. 2009 Aug; 28(8):1278-95. PMID: 19228553.
    View in: PubMed
  34. Scherrer B, Forbes F, Dojat M. A conditional random field approach for coupling local registration with robust tissue and structure segmentation. Med Image Comput Comput Assist Interv. 2009; 12(Pt 2):540-8. PMID: 20426154.
    View in: PubMed
  35. Scherrer B, Dojat M, Forbes F, Garbay C. Agentification of Markov model-based segmentation: application to magnetic resonance brain scans. Artif Intell Med. 2009 May; 46(1):81-95. PMID: 18929472.
    View in: PubMed
  36. Scherrer B, Forbes F, Garbay C, Dojat M. Fully Bayesian joint model for MR brain scan tissue and structure segmentation. Med Image Comput Comput Assist Interv. 2008; 11(Pt 2):1066-74. PMID: 18982710.
    View in: PubMed
  37. Scherrer B, Dojat M, Forbes F, Garbay C. LOCUS: local cooperative unified segmentation of MRI brain scans. Med Image Comput Comput Assist Interv. 2007; 10(Pt 1):219-27. PMID: 18051062; PMCID: PMC2735243.
  38. Kabir Y, Dojat M, Scherrer B, Forbes F, Garbay C. Multimodal MRI segmentation of ischemic stroke lesions. Conf Proc IEEE Eng Med Biol Soc. 2007; 2007:1595-8. PMID: 18002276; PMCID: PMC2735153.
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