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Ramy Arnaout, M.D., Ph.D.

TitleAssistant Professor of Pathology
InstitutionBeth Israel Deaconess Medical Center
DepartmentPathology
AddressBeth Israel Deaconess Medical Center
Pathology
330 Brookline Ave
Boston MA 02215
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 Bibliographic 
 selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Kaplinsky J, Li A, Sun A, Coffre M, Koralov SB, Arnaout R. Antibody repertoire deep sequencing reveals antigen-independent selection in maturing B cells. Proc Natl Acad Sci U S A. 2014 Jun 24; 111(25):E2622-9.
    View in: PubMed
  2. Theisen-Toupal J, Breu AC, Mattison ML, Arnaout R. Diagnostic yield of head computed tomography for the hospitalized medical patient with delirium. J Hosp Med. 2014 Aug; 9(8):497-501.
    View in: PubMed
  3. Mohammad F, Theisen-Toupal JC, Arnaout R. Advantages and limitations of anticipating laboratory test results from regression- and tree-based rules derived from electronic health-record data. PLoS One. 2014; 9(4):e92199.
    View in: PubMed
  4. Baron JM, Dighe AS, Arnaout R, Balis UJ, Black-Schaffer WS, Carter AB, Henricks WH, Higgins JM, Jackson BR, Kim J, Klepeis VE, Le LP, Louis DN, Mandelker D, Mermel CH, Michaelson JS, Nagarajan R, Platt ME, Quinn AM, Rao L, Shirts BH, Gilbertson JR. The 2013 symposium on pathology data integration and clinical decision support and the current state of field. J Pathol Inform. 2014; 5:2.
    View in: PubMed
  5. Zhi M, Ding EL, Theisen-Toupal J, Whelan J, Arnaout R. The landscape of inappropriate laboratory testing: a 15-year meta-analysis. PLoS One. 2013; 8(11):e78962.
    View in: PubMed
  6. Tapper EB, Rahni DO, Arnaout R, Lai M. The overuse of serum ceruloplasmin measurement. Am J Med. 2013 Oct; 126(10):926.e1-5.
    View in: PubMed
  7. Lakhani KR, Boudreau KJ, Loh PR, Backstrom L, Baldwin C, Lonstein E, Lydon M, MacCormack A, Arnaout RA, Guinan EC. Prize-based contests can provide solutions to computational biology problems. Nat Biotechnol. 2013 Feb; 31(2):108-11.
    View in: PubMed
  8. Arnaout R, Buck TP, Roulette P, Sukhatme VP. Predicting the cost and pace of pharmacogenomic advances: an evidence-based study. Clin Chem. 2013 Apr; 59(4):649-57.
    View in: PubMed
  9. Arnaout R. Elementary, my dear Doctor Watson. Clin Chem. 2012 Jun; 58(6):986-8.
    View in: PubMed
  10. Arnaout R, Lee W, Cahill P, Honan T, Sparrow T, Weiand M, Nusbaum C, Rajewsky K, Koralov SB. High-resolution description of antibody heavy-chain repertoires in humans. PLoS One. 2011; 6(8):e22365.
    View in: PubMed
  11. Buck TP, Connor IM, Horowitz GL, Arnaout RA. CallWall: tracking resident calls to improve clinical utilization of pathology laboratories. Arch Pathol Lab Med. 2011 Jul; 135(7):920-4.
    View in: PubMed
  12. Haspel RL, Arnaout R, Briere L, Kantarci S, Marchand K, Tonellato P, Connolly J, Boguski MS, Saffitz JE. A call to action: training pathology residents in genomics and personalized medicine. Am J Clin Pathol. 2010 Jun; 133(6):832-4.
    View in: PubMed
  13. Boguski MS, Arnaout R, Hill C. Customized care 2020: how medical sequencing and network biology will enable personalized medicine. F1000 Biol Rep. 2009; 1:73.
    View in: PubMed
  14. Tsibris AM, Korber B, Arnaout R, Russ C, Lo CC, Leitner T, Gaschen B, Theiler J, Paredes R, Su Z, Hughes MD, Gulick RM, Greaves W, Coakley E, Flexner C, Nusbaum C, Kuritzkes DR. Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo. PLoS One. 2009; 4(5):e5683.
    View in: PubMed
  15. Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, Honan TA, Rubio ED, Krumm A, Lamb J, Nusbaum C, Green RD, Dekker J. Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. Genome Res. 2006 Oct; 16(10):1299-309.
    View in: PubMed
  16. Josée Dostie, Todd A Richmond, Ramy A Arnaout, Rebecca R Selzer, William L Lee, Tracey A Honan, Eric D Rubio, Anton Krumm, Justin Lamb, Chad Nusbaum, Roland D Green and Job Dekker. Genome Research. Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. 2006; 16(10):1299-309.
  17. Björn Sällström, Ramy A Arnaout, Wagied Davids, Pär Bjelkmar and Siv G E Andersson. J Mol Evol. Protein evolutionary rates correlate with expression independently of synonymous substitutions in Helicobacter pylori. 2006; 62(5):600-14.
  18. Ramy A Arnaout. BMC Genomics. Specificity and overlap in gene segment-defined antibody repertoires. 2005; 6:148.
  19. Wodarz D, Arnaout RA, Nowak MA, Lifson JD. Transient antiretroviral treatment during acute simian immunodeficiency virus infection facilitates long-term control of the virus. Philos Trans R Soc Lond B Biol Sci. 2000 Aug 29; 355(1400):1021-9.
    View in: PubMed
  20. Arnaout RA, Nowak MA, Wodarz D. HIV-1 dynamics revisited: biphasic decay by cytotoxic T lymphocyte killing? Proc Biol Sci. 2000 Jul 7; 267(1450):1347-54.
    View in: PubMed
  21. Arnaout RA, Nowak MA. Competitive coexistence in antiviral immunity. J Theor Biol. 2000 Jun 7; 204(3):431-41.
    View in: PubMed
  22. Masel J, Arnaout RA, O'Brien TR, Goedert JJ, Lloyd AL. Fluctuations in HIV-1 viral load are correlated to CD4+ T-lymphocyte count during the natural course of infection. J Acquir Immune Defic Syndr. 2000 Apr 15; 23(5):375-9.
    View in: PubMed
  23. Wodarz D, Page KM, Arnaout RA, Thomsen AR, Lifson JD, Nowak MA. A new theory of cytotoxic T-lymphocyte memory: implications for HIV treatment. Philos Trans R Soc Lond B Biol Sci. 2000 Mar 29; 355(1395):329-43.
    View in: PubMed
  24. Lifson JD, Rossio JL, Arnaout R, Li L, Parks TL, Schneider DK, Kiser RF, Coalter VJ, Walsh G, Imming RJ, Fisher B, Flynn BM, Bischofberger N, Piatak M, Hirsch VM, Nowak MA, Wodarz D. Containment of simian immunodeficiency virus infection: cellular immune responses and protection from rechallenge following transient postinoculation antiretroviral treatment. J Virol. 2000 Mar; 74(6):2584-93.
    View in: PubMed
  25. D Wodarz, K M Page, R A Arnaout, A R Thomsen, J D Lifson and M A Nowak. Philos Trans R Soc Lond B Biol Sci. A new theory of cytotoxic T-lymphocyte memory: implications for HIV treatment. 2000; 355(1395):329-43.
  26. R A Arnaout. Immunol Today. Perforin deficiency: fighting unarmed?. 2000; 21(11):592.
  27. D Wodarz, R A Arnaout, M A Nowak and J D Lifson. Philos Trans R Soc Lond B Biol Sci. Transient antiretroviral treatment during acute simian immunodeficiency virus infection facilitates long-term control of the virus. 2000; 355(1400):1021-9.
  28. J Masel, R A Arnaout, T R O'Brien, J J Goedert and A L Lloyd. J Acquir Immune Defic Syndr Hum Retrovirol. Fluctuations in HIV-1 viral load are correlated to CD4+ T-lymphocyte count during the natural course of infection. 2000; 23(5):375-9.
  29. R A Arnaout, M A Nowak and D Wodarz. Proc Biol Sci. HIV-1 dynamics revisited: biphasic decay by cytotoxic T lymphocyte killing?. 2000; 267(1450):1347-54.
  30. R A Arnaout and M A Nowak. J Theor Biol. Competitive coexistence in antiviral immunity. 2000; 204(3):431-41.
  31. Arnaout RA, Lloyd AL, O'Brien TR, Goedert JJ, Leonard JM, Nowak MA. A simple relationship between viral load and survival time in HIV-1 infection. Proc Natl Acad Sci U S A. 1999 Sep 28; 96(20):11549-53.
    View in: PubMed
  32. R A Arnaout, A L Lloyd, T R O'Brien, J J Goedert, J M Leonard and M A Nowak. Proc Natl Acad Sci. A simple relationship between viral load and survival time in HIV-1 infection. 1999; 96(20):11549-53.
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