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profilePontus R Skoglund, Ph.D.

TitleResearch Fellow in Genetics (INT)
InstitutionHarvard Medical School
DepartmentGenetics
AddressHarvard Medical School
Genetics - NRB
77 Avenue Louis Pasteur
Boston MA 02115
Phone617/432-7663
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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Fehren-Schmitz L, Jarman CL, Harkins KM, Kayser M, Popp BN, Skoglund P. Genetic Ancestry of Rapanui before and after European Contact. Curr Biol. 2017 Oct 23; 27(20):3209-3215.e6. PMID: 29033334.
    View in: PubMed
  2. Prüfer K, de Filippo C, Grote S, Mafessoni F, Korlevic P, Hajdinjak M, Vernot B, Skov L, Hsieh P, Peyrégne S, Reher D, Hopfe C, Nagel S, Maricic T, Fu Q, Theunert C, Rogers R, Skoglund P, Chintalapati M, Dannemann M, Nelson BJ, Key FM, Rudan P, Kucan Ž, Gušic I, Golovanova LV, Doronichev VB, Patterson N, Reich D, Eichler EE, Slatkin M, Schierup MH, Andrés AM, Kelso J, Meyer M, Pääbo S. A high-coverage Neandertal genome from Vindija Cave in Croatia. Science. 2017 11 03; 358(6363):655-658. PMID: 28982794.
    View in: PubMed
  3. Skoglund P, Thompson JC, Prendergast ME, Mittnik A, Sirak K, Hajdinjak M, Salie T, Rohland N, Mallick S, Peltzer A, Heinze A, Olalde I, Ferry M, Harney E, Michel M, Stewardson K, Cerezo-Román JI, Chiumia C, Crowther A, Gomani-Chindebvu E, Gidna AO, Grillo KM, Helenius IT, Hellenthal G, Helm R, Horton M, López S, Mabulla AZP, Parkington J, Shipton C, Thomas MG, Tibesasa R, Welling M, Hayes VM, Kennett DJ, Ramesar R, Meyer M, Pääbo S, Patterson N, Morris AG, Boivin N, Pinhasi R, Krause J, Reich D. Reconstructing Prehistoric African Population Structure. Cell. 2017 Sep 21; 171(1):59-71.e21. PMID: 28938123.
    View in: PubMed
  4. Owers KA, Sjödin P, Schlebusch CM, Skoglund P, Soodyall H, Jakobsson M. Adaptation to infectious disease exposure in indigenous Southern African populations. Proc Biol Sci. 2017 Apr 12; 284(1852). PMID: 28381615.
    View in: PubMed
  5. Kennett DJ, Plog S, George RJ, Culleton BJ, Watson AS, Skoglund P, Rohland N, Mallick S, Stewardson K, Kistler L, LeBlanc SA, Whiteley PM, Reich D, Perry GH. Archaeogenomic evidence reveals prehistoric matrilineal dynasty. Nat Commun. 2017 Feb 21; 8:14115. PMID: 28221340.
    View in: PubMed
  6. Skoglund P, Posth C, Sirak K, Spriggs M, Valentin F, Bedford S, Clark GR, Reepmeyer C, Petchey F, Fernandes D, Fu Q, Harney E, Lipson M, Mallick S, Novak M, Rohland N, Stewardson K, Abdullah S, Cox MP, Friedlaender FR, Friedlaender JS, Kivisild T, Koki G, Kusuma P, Merriwether DA, Ricaut FX, Wee JT, Patterson N, Krause J, Pinhasi R, Reich D. Genomic insights into the peopling of the Southwest Pacific. Nature. 2016 10 27; 538(7626):510-513. PMID: 27698418.
    View in: PubMed
  7. Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, Renaud G, Erlich Y, Willems T, Gallo C, Spence JP, Song YS, Poletti G, Balloux F, van Driem G, de Knijff P, Romero IG, Jha AR, Behar DM, Bravi CM, Capelli C, Hervig T, Moreno-Estrada A, Posukh OL, Balanovska E, Balanovsky O, Karachanak-Yankova S, Sahakyan H, Toncheva D, Yepiskoposyan L, Tyler-Smith C, Xue Y, Abdullah MS, Ruiz-Linares A, Beall CM, Di Rienzo A, Jeong C, Starikovskaya EB, Metspalu E, Parik J, Villems R, Henn BM, Hodoglugil U, Mahley R, Sajantila A, Stamatoyannopoulos G, Wee JT, Khusainova R, Khusnutdinova E, Litvinov S, Ayodo G, Comas D, Hammer MF, Kivisild T, Klitz W, Winkler CA, Labuda D, Bamshad M, Jorde LB, Tishkoff SA, Watkins WS, Metspalu M, Dryomov S, Sukernik R, Singh L, Thangaraj K, Pääbo S, Kelso J, Patterson N, Reich D. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature. 2016 Oct 13; 538(7624):201-206. PMID: 27654912.
    View in: PubMed
  8. Skoglund P, Reich D. A genomic view of the peopling of the Americas. Curr Opin Genet Dev. 2016 Dec; 41:27-35. PMID: 27507099.
    View in: PubMed
  9. Fu Q, Posth C, Hajdinjak M, Petr M, Mallick S, Fernandes D, Furtwängler A, Haak W, Meyer M, Mittnik A, Nickel B, Peltzer A, Rohland N, Slon V, Talamo S, Lazaridis I, Lipson M, Mathieson I, Schiffels S, Skoglund P, Derevianko AP, Drozdov N, Slavinsky V, Tsybankov A, Cremonesi RG, Mallegni F, Gély B, Vacca E, Morales MR, Straus LG, Neugebauer-Maresch C, Teschler-Nicola M, Constantin S, Moldovan OT, Benazzi S, Peresani M, Coppola D, Lari M, Ricci S, Ronchitelli A, Valentin F, Thevenet C, Wehrberger K, Grigorescu D, Rougier H, Crevecoeur I, Flas D, Semal P, Mannino MA, Cupillard C, Bocherens H, Conard NJ, Harvati K, Moiseyev V, Drucker DG, Svoboda J, Richards MP, Caramelli D, Pinhasi R, Kelso J, Patterson N, Krause J, Pääbo S, Reich D. The genetic history of Ice Age Europe. Nature. 2016 06 09; 534(7606):200-5. PMID: 27135931; PMCID: PMC4943878 [Available on 11/02/16].
  10. Günther T, Valdiosera C, Malmström H, Ureña I, Rodriguez-Varela R, Sverrisdóttir ÓO, Daskalaki EA, Skoglund P, Naidoo T, Svensson EM, Bermúdez de Castro JM, Carbonell E, Dunn M, Storå J, Iriarte E, Arsuaga JL, Carretero JM, Götherström A, Jakobsson M. Ancient genomes link early farmers from Atapuerca in Spain to modern-day Basques. Proc Natl Acad Sci U S A. 2015 Sep 22; 112(38):11917-22. PMID: 26351665; PMCID: PMC4586848.
  11. Skoglund P, Mallick S, Bortolini MC, Chennagiri N, Hünemeier T, Petzl-Erler ML, Salzano FM, Patterson N, Reich D. Genetic evidence for two founding populations of the Americas. Nature. 2015 Sep 03; 525(7567):104-8. PMID: 26196601; PMCID: PMC4982469.
  12. Fu Q, Hajdinjak M, Moldovan OT, Constantin S, Mallick S, Skoglund P, Patterson N, Rohland N, Lazaridis I, Nickel B, Viola B, Prüfer K, Meyer M, Kelso J, Reich D, Pääbo S. An early modern human from Romania with a recent Neanderthal ancestor. Nature. 2015 Aug 13; 524(7564):216-9. PMID: 26098372; PMCID: PMC4537386.
  13. Skoglund P, Ersmark E, Palkopoulou E, Dalén L. Ancient wolf genome reveals an early divergence of domestic dog ancestors and admixture into high-latitude breeds. Curr Biol. 2015 Jun 01; 25(11):1515-9. PMID: 26004765.
    View in: PubMed
  14. Palkopoulou E, Mallick S, Skoglund P, Enk J, Rohland N, Li H, Omrak A, Vartanyan S, Poinar H, Götherström A, Reich D, Dalén L. Complete genomes reveal signatures of demographic and genetic declines in the woolly mammoth. Curr Biol. 2015 May 18; 25(10):1395-400. PMID: 25913407; PMCID: PMC4439331.
  15. Krzewinska M, Bjørnstad G, Skoglund P, Olason PI, Bill J, Götherström A, Hagelberg E. Mitochondrial DNA variation in the Viking age population of Norway. Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19; 370(1660):20130384. PMID: 25487335; PMCID: PMC4275891.
  16. Malmström H, Linderholm A, Skoglund P, Storå J, Sjödin P, Gilbert MT, Holmlund G, Willerslev E, Jakobsson M, Lidén K, Götherström A. Ancient mitochondrial DNA from the northern fringe of the Neolithic farming expansion in Europe sheds light on the dispersion process. Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19; 370(1660):20130373. PMID: 25487325; PMCID: PMC4275881.
  17. da Fonseca RR, Smith BD, Wales N, Cappellini E, Skoglund P, Fumagalli M, Samaniego JA, Carøe C, Ávila-Arcos MC, Hufnagel DE, Korneliussen TS, Vieira FG, Jakobsson M, Arriaza B, Willerslev E, Nielsen R, Hufford MB, Albrechtsen A, Ross-Ibarra J, Gilbert MT. The origin and evolution of maize in the Southwestern United States. Nat Plants. 2015 Jan 08; 1:14003. PMID: 27246050.
    View in: PubMed
  18. Raghavan M, DeGiorgio M, Albrechtsen A, Moltke I, Skoglund P, Korneliussen TS, Grønnow B, Appelt M, Gulløv HC, Friesen TM, Fitzhugh W, Malmström H, Rasmussen S, Olsen J, Melchior L, Fuller BT, Fahrni SM, Stafford T, Grimes V, Renouf MA, Cybulski J, Lynnerup N, Lahr MM, Britton K, Knecht R, Arneborg J, Metspalu M, Cornejo OE, Malaspinas AS, Wang Y, Rasmussen M, Raghavan V, Hansen TV, Khusnutdinova E, Pierre T, Dneprovsky K, Andreasen C, Lange H, Hayes MG, Coltrain J, Spitsyn VA, Götherström A, Orlando L, Kivisild T, Villems R, Crawford MH, Nielsen FC, Dissing J, Heinemeier J, Meldgaard M, Bustamante C, O'Rourke DH, Jakobsson M, Gilbert MT, Nielsen R, Willerslev E. The genetic prehistory of the New World Arctic. Science. 2014 Aug 29; 345(6200):1255832. PMID: 25170159.
    View in: PubMed
  19. Skoglund P, Sjödin P, Skoglund T, Lascoux M, Jakobsson M. Investigating population history using temporal genetic differentiation. Mol Biol Evol. 2014 Sep; 31(9):2516-27. PMID: 24939468; PMCID: PMC4137715.
  20. Skoglund P, Malmström H, Omrak A, Raghavan M, Valdiosera C, Günther T, Hall P, Tambets K, Parik J, Sjögren KG, Apel J, Willerslev E, Storå J, Götherström A, Jakobsson M. Genomic diversity and admixture differs for Stone-Age Scandinavian foragers and farmers. Science. 2014 May 16; 344(6185):747-50. PMID: 24762536.
    View in: PubMed
  21. Rasmussen M, Anzick SL, Waters MR, Skoglund P, DeGiorgio M, Stafford TW, Rasmussen S, Moltke I, Albrechtsen A, Doyle SM, Poznik GD, Gudmundsdottir V, Yadav R, Malaspinas AS, White SS, Allentoft ME, Cornejo OE, Tambets K, Eriksson A, Heintzman PD, Karmin M, Korneliussen TS, Meltzer DJ, Pierre TL, Stenderup J, Saag L, Warmuth VM, Lopes MC, Malhi RS, Brunak S, Sicheritz-Ponten T, Barnes I, Collins M, Orlando L, Balloux F, Manica A, Gupta R, Metspalu M, Bustamante CD, Jakobsson M, Nielsen R, Willerslev E. The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature. 2014 Feb 13; 506(7487):225-9. PMID: 24522598; PMCID: PMC4878442.
  22. Sjödin P, Skoglund P, Jakobsson M. Assessing the maximum contribution from ancient populations. Mol Biol Evol. 2014 May; 31(5):1248-60. PMID: 24497031.
    View in: PubMed
  23. Skoglund P, Northoff BH, Shunkov MV, Derevianko AP, Pääbo S, Krause J, Jakobsson M. Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal. Proc Natl Acad Sci U S A. 2014 Feb 11; 111(6):2229-34. PMID: 24469802; PMCID: PMC3926038.
  24. Raghavan M, Skoglund P, Graf KE, Metspalu M, Albrechtsen A, Moltke I, Rasmussen S, Stafford TW, Orlando L, Metspalu E, Karmin M, Tambets K, Rootsi S, Mägi R, Campos PF, Balanovska E, Balanovsky O, Khusnutdinova E, Litvinov S, Osipova LP, Fedorova SA, Voevoda MI, DeGiorgio M, Sicheritz-Ponten T, Brunak S, Demeshchenko S, Kivisild T, Villems R, Nielsen R, Jakobsson M, Willerslev E. Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature. 2014 Jan 02; 505(7481):87-91. PMID: 24256729; PMCID: PMC4105016.
  25. Schlebusch CM, Skoglund P, Sjödin P, Gattepaille LM, Hernandez D, Jay F, Li S, De Jongh M, Singleton A, Blum MG, Soodyall H, Jakobsson M. Genomic variation in seven Khoe-San groups reveals adaptation and complex African history. Science. 2012 Oct 19; 338(6105):374-9. PMID: 22997136.
    View in: PubMed
  26. Schlebusch CM, Sjödin P, Skoglund P, Jakobsson M. Stronger signal of recent selection for lactase persistence in Maasai than in Europeans. Eur J Hum Genet. 2013 May; 21(5):550-3. PMID: 22948027; PMCID: PMC3641376.
  27. Skoglund P, Malmström H, Raghavan M, Storå J, Hall P, Willerslev E, Gilbert MT, Götherström A, Jakobsson M. Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe. Science. 2012 Apr 27; 336(6080):466-9. PMID: 22539720.
    View in: PubMed
  28. Nyström V, Humphrey J, Skoglund P, McKeown NJ, Vartanyan S, Shaw PW, Lidén K, Jakobsson M, Barnes I, Angerbjörn A, Lister A, Dalén L. Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation. Mol Ecol. 2012 Jul; 21(14):3391-402. PMID: 22443459.
    View in: PubMed
  29. Skoglund P, Jakobsson M. Archaic human ancestry in East Asia. Proc Natl Acad Sci U S A. 2011 Nov 08; 108(45):18301-6. PMID: 22042846; PMCID: PMC3215044.
  30. Malmström H, Vretemark M, Tillmar A, Durling MB, Skoglund P, Gilbert MT, Willerslev E, Holmlund G, Götherström A. Finding the founder of Stockholm - a kinship study based on Y-chromosomal, autosomal and mitochondrial DNA. Ann Anat. 2012 Jan 20; 194(1):138-45. PMID: 21596538.
    View in: PubMed
  31. Castroviejo-Fisher S, Skoglund P, Valadez R, Vilà C, Leonard JA. Vanishing native American dog lineages. BMC Evol Biol. 2011 Mar 21; 11:73. PMID: 21418639; PMCID: PMC3076259.
  32. Skoglund P, Götherström A, Jakobsson M. Estimation of population divergence times from non-overlapping genomic sequences: examples from dogs and wolves. Mol Biol Evol. 2011 Apr; 28(4):1505-17. PMID: 21177316.
    View in: PubMed
  33. Skoglund P, Höglund J. Sequence polymorphism in candidate genes for differences in winter plumage between Scottish and Scandinavian Willow Grouse (Lagopus lagopus). PLoS One. 2010 Apr 23; 5(4):e10334. PMID: 20428241; PMCID: PMC2859059.
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