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Gene Regulatory Networks
The somatic genomic landscape of glioblastoma.
Sequence co-evolution gives 3D contacts and structures of protein complexes.
Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations.
Network modeling of the transcriptional effects of copy number aberrations in glioblastoma.
Using MEMo to discover mutual exclusivity modules in cancer.
Automated network analysis identifies core pathways in glioblastoma.
Mutual exclusivity analysis identifies oncogenic network modules.
Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.
Perturbation biology nominates upstream-downstream drug combinations in RAF inhibitor resistant melanoma cells.
Integration of biological networks and gene expression data using Cytoscape.
Pathway and network analysis of cancer genomes.
Application of MAGNet Tools to Gene Regulatory Networks in Cancer