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One or more keywords matched the following items that are connected to Lipsitch, Marc
Item TypeName
Academic Article Transmission dynamics and control of severe acute respiratory syndrome.
Academic Article Bacterial vaccines and serotype replacement: lessons from Haemophilus influenzae and prospects for Streptococcus pneumoniae.
Academic Article Pneumococcal capsular polysaccharide structure predicts serotype prevalence.
Academic Article Pre-dispensing of antivirals to high-risk individuals in an influenza pandemic.
Academic Article Competition among Streptococcus pneumoniae for intranasal colonization in a mouse model.
Academic Article Concentration-dependent selection of small phenotypic differences in TEM beta-lactamase-mediated antibiotic resistance.
Academic Article Effects of antiviral usage on transmission dynamics of herpes simplex virus type 1 and on antiviral resistance: predictions of mathematical models.
Academic Article Projection of the future dimensions and costs of the genital herpes simplex type 2 epidemic in the United States.
Academic Article The influence of hitchhiking and deleterious mutation upon asexual mutation rates.
Academic Article Incremental increase in fitness cost with increased beta -lactam resistance in pneumococci evaluated by competition in an infant rat nasal colonization model.
Academic Article The within-host population dynamics of antibacterial chemotherapy: conditions for the evolution of resistance.
Academic Article The analysis of hospital infection data using hidden Markov models.
Academic Article Natural selection, infectious transfer and the existence conditions for bacterial plasmids.
Academic Article Interpreting results from trials of pneumococcal conjugate vaccines: a statistical test for detecting vaccine-induced increases in carriage of nonvaccine serotypes.
Academic Article Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection.
Academic Article The population genetics of antibiotic resistance. II: Analytic theory for sustained populations of bacteria in a community of hosts.
Academic Article Effect of human leukocyte antigen heterozygosity on infectious disease outcome: the need for allele-specific measures.
Academic Article Modeling community- and individual-level effects of child-care center attendance on pneumococcal carriage.
Academic Article Population dynamics of tuberculosis treatment: mathematical models of the roles of non-compliance and bacterial heterogeneity in the evolution of drug resistance.
Academic Article Predicting the epidemic sizes of influenza A/H1N1, A/H3N2, and B: a statistical method.
Academic Article Transmissibility of 1918 pandemic influenza.
Academic Article Mathematical models of parasite responses to host immune defences.
Academic Article The population genetics of antibiotic resistance.
Academic Article The epidemiology of antibiotic resistance in hospitals: paradoxes and prescriptions.
Academic Article Ecological theory suggests that antimicrobial cycling will not reduce antimicrobial resistance in hospitals.
Academic Article Alert threshold algorithms and malaria epidemic detection.
Academic Article Antimicrobial use and antimicrobial resistance: a population perspective.
Academic Article Prediction of serotypes causing invasive pneumococcal disease in unvaccinated and vaccinated populations.
Academic Article Beneficial and perverse effects of isoniazid preventive therapy for latent tuberculosis infection in HIV-tuberculosis coinfected populations.
Academic Article Pathogen diversity and hidden regimes of apparent competition.
Academic Article The population dynamics of antimicrobial chemotherapy.
Academic Article The role of complement in innate and adaptive immunity to pneumococcal colonization and sepsis in a murine model.
Academic Article Antiviral resistance and the control of pandemic influenza.
Academic Article Geographic diversity and temporal trends of antimicrobial resistance in Streptococcus pneumoniae in the United States.
Academic Article Generation interval contraction and epidemic data analysis.
Academic Article SpxB is a suicide gene of Streptococcus pneumoniae and confers a selective advantage in an in vivo competitive colonization model.
Academic Article Cholera modeling: challenges to quantitative analysis and predicting the impact of interventions.
Academic Article Vaccination against colonizing bacteria with multiple serotypes.
Academic Article Evaluating treatment protocols to prevent antibiotic resistance.
Academic Article Intranasal immunization with killed unencapsulated whole cells prevents colonization and invasive disease by capsulated pneumococci.
Academic Article Epidemiology and risk factors for Staphylococcus aureus colonization in children in the post-PCV7 era.
Academic Article Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.
Academic Article Distinct effects on diversifying selection by two mechanisms of immunity against Streptococcus pneumoniae.
Academic Article Studies needed to address public health challenges of the 2009 H1N1 influenza pandemic: insights from modeling.
Academic Article Vaccine allocation in a declining epidemic.
Academic Article Antibodies to conserved pneumococcal antigens correlate with, but are not required for, protection against pneumococcal colonization induced by prior exposure in a mouse model.
Academic Article Absolute humidity and the seasonal onset of influenza in the continental United States.
Academic Article Multiple equilibria: tuberculosis transmission require unrealistic assumptions.
Academic Article Broad conditions favor the evolution of phase-variable loci.
Academic Article Estimating rates of carriage acquisition and clearance and competitive ability for pneumococcal serotypes in Kenya with a Markov transition model.
Academic Article Upgrading antibiotic use within a class: tradeoff between resistance and treatment success.
Academic Article How generation intervals shape the relationship between growth rates and reproductive numbers.
Academic Article Seasonality of antibiotic-resistant streptococcus pneumoniae that causes acute otitis media: a clue for an antibiotic-restriction policy?
Academic Article Exploring the relationship between incidence and the average age of infection during seasonal epidemics.
Academic Article Modelling seasonal variations in the age and incidence of Kawasaki disease to explore possible infectious aetiologies.
Academic Article Distribution of vaccine/antivirals and the 'least spread line' in a stratified population.
Academic Article Reproductive numbers, epidemic spread and control in a community of households.
Academic Article Secular trends in Helicobacter pylori seroprevalence in adults in the United States: evidence for sustained race/ethnic disparities.
Academic Article Niche and neutral effects of acquired immunity permit coexistence of pneumococcal serotypes.
Academic Article No coexistence for free: neutral null models for multistrain pathogens.
Academic Article Estimating variability in the transmission of severe acute respiratory syndrome to household contacts in Hong Kong, China.
Academic Article Hedging against antiviral resistance during the next influenza pandemic using small stockpiles of an alternative chemotherapy.
Academic Article Quantifying child mortality reductions related to measles vaccination.
Academic Article The population dynamics of vertically and horizontally transmitted parasites.
Academic Article Impaired innate and adaptive immunity to Streptococcus pneumoniae and its effect on colonization in an infant mouse model.
Academic Article Shortcomings of vitamin D-based model simulations of seasonal influenza.
Academic Article The evolution of virulence in sexually transmitted HIV/AIDS.
Academic Article Resistance to antimicrobial chemotherapy: a prescription for research and action.
Academic Article The rise and fall of antimicrobial resistance.
Academic Article Understanding the spread of antibiotic resistant pathogens in hospitals: mathematical models as tools for control.
Academic Article Invited commentary: real-time tracking of control measures for emerging infections.
Academic Article Weather-based prediction of Plasmodium falciparum malaria in epidemic-prone regions of Ethiopia I. Patterns of lagged weather effects reflect biological mechanisms.
Academic Article Little evidence for genetic susceptibility to influenza A (H5N1) from family clustering data.
Concept Models, Theoretical
Concept Logistic Models
Concept Models, Animal
Concept Models, Genetic
Concept Computer Simulation
Concept Models, Immunological
Concept Linear Models
Concept Disease Models, Animal
Concept Models, Statistical
Concept Models, Biological
Concept Proportional Hazards Models
Concept Models, Economic
Academic Article Targeting imperfect vaccines against drug-resistance determinants: a strategy for countering the rise of drug resistance.
Academic Article Population genomics of post-vaccine changes in pneumococcal epidemiology.
Academic Article Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis.
Academic Article Avian influenza: Ferret H7N9 flu model questioned.
Academic Article Using pneumococcal carriage data to monitor postvaccination changes in invasive disease.
Academic Article Within-host selection is limited by an effective population of Streptococcus pneumoniae during nasopharyngeal colonization.
Academic Article Real-time influenza forecasts during the 2012-2013 season.
Academic Article Estimating the per-exposure effect of infectious disease interventions.
Academic Article The US 2009 A(H1N1) influenza epidemic: quantifying the impact of school openings on the reproductive number.
Academic Article A missing dimension in measures of vaccination impacts.
Academic Article Within-host bacterial diversity hinders accurate reconstruction of transmission networks from genomic distance data.
Academic Article Utilizing syndromic surveillance data for estimating levels of influenza circulation.
Academic Article Development, calibration and performance of an HIV transmission model incorporating natural history and behavioral patterns: application in South Africa.
Academic Article The distribution of pairwise genetic distances: a tool for investigating disease transmission.
Academic Article Carriage burden, multiple colonization and antibiotic pressure promote emergence of resistant vaccine escape pneumococci.
Academic Article Inference of seasonal and pandemic influenza transmission dynamics.
Academic Article Improving pandemic influenza risk assessment.
Academic Article How could preventive therapy affect the prevalence of drug resistance? Causes and consequences.
Academic Article Effect of Serotype on Pneumococcal Competition in a Mouse Colonization Model.
Academic Article Calls for caution in genome engineering should be a model for similar dialogue on pandemic pathogen research.
Academic Article Impact of Host Heterogeneity on the Efficacy of Interventions to Reduce Staphylococcus aureus Carriage.
Academic Article Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus.
Academic Article Improving Control of Antibiotic-Resistant Gonorrhea by Integrating Research Agendas Across Disciplines: Key Questions Arising From Mathematical Modeling.
Academic Article Can the Heterosexual HIV Epidemic be Eliminated in South Africa Using Combination Prevention? A Modeling Analysis.
Grant MIDAS Center for Communicable Disease Dynamics
Grant Epidemiology of Infectious Diseases
Grant Epidemiologic Methods: Resistant Nosocomial Infections
Grant Methodological Approaches to Planning and Analysis of N*
Grant Mechanisms and Population Genomics of Pneumococcal Antigenic Diversity
Academic Article Underprotection of Unpredictable Statistical Lives Compared to Predictable Ones.
Academic Article Fractional dosing of yellow fever vaccine to extend supply: a modelling study.
Academic Article Monitoring the fitness of antiviral-resistant influenza strains during an epidemic: a mathematical modelling study.
Academic Article Association of Pneumococcal Protein Antigen Serology With Age and Antigenic Profile of Colonizing Isolates.
Academic Article Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage.
Academic Article Using simulation to aid trial design: Ring-vaccination trials.
Academic Article Displacement of sexual partnerships in trials of sexual behavior interventions: A model-based assessment of consequences.
Academic Article Host population structure and treatment frequency maintain balancing selection on drug resistance.
Academic Article Exploring the role of competition induced by non-vaccine serotypes for herd protection following pneumococcal vaccination.
Academic Article Vaccine Effects on Heterogeneity in Susceptibility and Implications for Population Health Management.
Academic Article Simulations for designing and interpreting intervention trials in infectious diseases.
Academic Article Impact of stochastically generated heterogeneity in hazard rates on individually randomized vaccine efficacy trials.
Academic Article The evolution of antibiotic resistance in a structured host population.
Academic Article Use of an individual-based model of pneumococcal carriage for planning a randomized trial of a whole-cell vaccine.
Academic Article Analyzing Vaccine Trials in Epidemics With Mild and Asymptomatic Infection.
Academic Article The Relative Impact of Community and Hospital Antibiotic Use on the Selection of Extended-spectrum Beta-lactamase-producing Escherichia coli.
Academic Article Models of immune selection for multi-locus antigenic diversity of pathogens.
Academic Article Limited available evidence supports theoretical predictions of reduced vaccine efficacy at higher exposure dose.
Academic Article Analysis of a meningococcal meningitis outbreak in Niger - potential effectiveness of reactive prophylaxis.
Academic Article Herd immunity alters the conditions for performing dose schedule comparisons: an individual-based model of pneumococcal carriage.
Academic Article Modelling the epidemiologic impact of achieving UNAIDS fast-track 90-90-90 and 95-95-95 targets in South Africa.
Academic Article On the evolutionary ecology of multidrug resistance in bacteria.
Academic Article Resistance diagnostics as a public health tool to combat antibiotic resistance: A model-based evaluation.
Academic Article Depletion-of-susceptibles bias in influenza vaccine waning studies: how to ensure robust results.
Academic Article Mathematical modelling for antibiotic resistance control policy: do we know enough?
Academic Article Using Genetic Distance from Archived Samples for the Prediction of Antibiotic Resistance in Escherichia coli.
Academic Article Identifying Locations with Possible Undetected Imported Severe Acute Respiratory Syndrome Coronavirus 2 Cases by Using Importation Predictions.
Academic Article Nowcasting by Bayesian Smoothing: A flexible, generalizable model for real-time epidemic tracking.
Academic Article Estimating clinical severity of COVID-19 from the transmission dynamics in Wuhan, China.
Academic Article Projecting the transmission dynamics of SARS-CoV-2 through the postpandemic period.
Academic Article Individual quarantine versus active monitoring of contacts for the mitigation of COVID-19: a modelling study.
Academic Article Comparative Impact of Individual Quarantine vs. Active Monitoring of Contacts for the Mitigation of COVID-19: a modelling study.
Academic Article Estimating the contribution of different age strata to vaccine serotype pneumococcal transmission in the pre vaccine era: a modelling study.
Academic Article Statistical Properties of Stepped Wedge Cluster-Randomized Trials in Infectious Disease Outbreaks.
Academic Article Potential Biases Arising From Epidemic Dynamics in Observational Seroprotection Studies.
Academic Article Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae.
Academic Article Big data and simple models used to track the spread of COVID-19 in cities.
Academic Article Practical considerations for measuring the effective reproductive number, Rt.
Academic Article Model-informed COVID-19 vaccine prioritization strategies by age and serostatus.
Academic Article Estimating internationally imported cases during the early COVID-19 pandemic.
Academic Article Model-informed COVID-19 vaccine prioritization strategies by age and serostatus.
Grant Casual, Statistical and Mathematical Modeling with Serologic Data
Academic Article Modeling the impact of racial and ethnic disparities on COVID-19 epidemic dynamics.
Academic Article Estimating epidemiologic dynamics from cross-sectional viral load distributions.
Academic Article Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches.
Search Criteria
  • Simulation
  • modeling
Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.