Harvard Catalyst Profiles

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Alireza Gholipour, Ph.D.

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Biography
education and training
Massachusetts General Hospital and Harvard Medical School, Boston, USAPost-doc, Bioengineering
University of Sydney, Sydney, Australia2023Post-doc, Bioengineering
Torrens University Australia, Sydney, Australia2021Post-doc, Bioengineering
University of Adelaide, Adelaide, Australia2020Lecturer, Bioengineering
University of Adelaide, Adelaide, AustraliaPhD2019Bioengineering

Overview

Bibliographic
selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
Displaying 25 of 27 total Publications Show all
  1. Wang X, Fan H, Tan Z, Vasylechko S, Yang E, Didier R, Afacan O, Uecker M, Warfield SK, Gholipour A. Rapid, High-resolution and Distortion-free R2* Mapping of Fetal Brain using Multi-echo Radial FLASH and Model-based Reconstruction. ArXiv. 2025 Jan 07. PMID: 39801623; PMCID: PMC11722525.
    Citations:
  2. Calixto C, Soldatelli MD, Li B, Vasung L, Jaimes C, Gholipour A, Warfield SK, Karimi D. White Matter Tract Crossing and Bottleneck Regions in the Fetal Brain. Hum Brain Mapp. 2025 Jan; 46(1):e70132. PMID: 39812160; PMCID: PMC11733681.
    Citations:
    Fields: BraBrain
  3. Calixto C, Dorigatti Soldatelli M, Jaimes C, Pierotich L, Warfield SK, Gholipour A, Karimi D. A detailed spatiotemporal atlas of the white matter tracts for the fetal brain. Proc Natl Acad Sci U S A. 2025 Jan 07; 122(1):e2410341121. PMID: 39793058; PMCID: PMC11725871.
    Citations: 1
    Fields: SciScience
  4. Kaandorp MPT, Zijlstra F, Karimi D, Gholipour A, While PT. Incorporating spatial information in deep learning parameter estimation with application to the intravoxel incoherent motion model in diffusion-weighted MRI. Med Image Anal. 2024 Nov 26; 101:103414. PMID: 39740472.
    Citations:
    Fields: DiaDiagnostic Imaging
  5. Qin JJ, Gok M, Gholipour A, LoPilato J, Kirkby M, Poole C, Smith P, Grover R, Grieve SM. Four-Dimensional Flow MRI for Cardiovascular Evaluation (4DCarE): A Prospective Non-Inferiority Study of a Rapid Cardiac MRI Exam: Study Protocol and Pilot Analysis. Diagnostics (Basel). 2024 Nov 18; 14(22). PMID: 39594256; PMCID: PMC11593203.
    Citations:
  6. Karimi D, Calixto C, Snoussi H, Cortes-Albornoz MC, Velasco-Annis C, Rollins C, Jaimes C, Gholipour A, Warfield SK. Detailed delineation of the fetal brain in diffusion MRI via multi-task learning. ArXiv. 2024 Sep 12. PMID: 39314513; PMCID: PMC11419175.
    Citations:
  7. Karimi D, Calixto C, Snoussi H, Cortes-Albornoz MC, Velasco-Annis C, Rollins C, Jaimes C, Gholipour A, Warfield SK. Detailed delineation of the fetal brain in diffusion MRI via multi-task learning. bioRxiv. 2024 Aug 30. PMID: 39257731; PMCID: PMC11383702.
    Citations:
  8. Wu Y, Vasung L, Calixto C, Gholipour A, Karimi D. Characterizing normal perinatal development of the human brain structural connectivity. Hum Brain Mapp. 2024 Aug 01; 45(11):e26784. PMID: 39031955; PMCID: PMC11259574.
    Citations:
    Fields: BraBrainTranslation:Humans
  9. Calixto C, Soldatelli MD, Li B, Pierotich L, Gholipour A, Warfield SK, Karimi D. White matter tract crossing and bottleneck regions in the fetal brain. bioRxiv. 2024 Jul 22. PMID: 39091823; PMCID: PMC11291018.
    Citations:
  10. Calixto C, Jaimes C, Soldatelli MD, Warfield SK, Gholipour A, Karimi D. Anatomically constrained tractography of the fetal brain. Neuroimage. 2024 Aug 15; 297:120723. PMID: 39029605; PMCID: PMC11382095.
    Citations: 1
    Fields: DiaDiagnostic ImagingTranslation:Humans
  11. Snoussi H, Karimi D, Afacan O, Utkur M, Gholipour A. HAITCH: A Framework for Distortion and Motion Correction in Fetal Multi-Shell Diffusion-Weighted MRI. ArXiv. 2024 Jun 28. PMID: 38979484; PMCID: PMC11230346.
    Citations:
  12. Calixto C, Taymourtash A, Karimi D, Snoussi H, Velasco-Annis C, Jaimes C, Gholipour A. Advances in Fetal Brain Imaging. Magn Reson Imaging Clin N Am. 2024 Aug; 32(3):459-478. PMID: 38944434; PMCID: PMC11216711.
    Citations: 2
    Fields: DiaDiagnostic ImagingTranslation:Humans
  13. Calixto C, Soldatelli MD, Jaimes C, Warfield SK, Gholipour A, Karimi D. A detailed spatio-temporal atlas of the white matter tracts for the fetal brain. bioRxiv. 2024 Apr 27. PMID: 38712296; PMCID: PMC11071632.
    Citations:
  14. Kebiri H, Gholipour A, Lin R, Vasung L, Calixto C, Krsnik Ž, Karimi D, Bach Cuadra M. Deep learning microstructure estimation of developing brains from diffusion MRI: A newborn and fetal study. Med Image Anal. 2024 Jul; 95:103186. PMID: 38701657.
    Citations: 2
    Fields: DiaDiagnostic ImagingTranslation:Humans
  15. Masse O, Brumfield O, Ahmad E, Velasco-Annis C, Zhang J, Rollins CK, Connolly S, Barnewolt C, Shamshirsaz AA, Qaderi S, Javinani A, Warfield SK, Yang E, Gholipour A, Feldman HA, Grant PE, Mulliken JB, Pierotich L, Estroff J. Divergent growth of the transient brain compartments in fetuses with nonsyndromic isolated clefts involving the primary and secondary palate. Cereb Cortex. 2024 01 31; 34(2). PMID: 38365268; PMCID: PMC10872676.
    Citations:
    Fields: BraBrainTranslation:Humans
  16. Calixto C, Machado-Rivas F, Cortes-Albornoz MC, Karimi D, Velasco-Annis C, Afacan O, Warfield SK, Gholipour A, Jaimes C. Characterizing microstructural development in the fetal brain using diffusion MRI from 23 to 36 weeks of gestation. Cereb Cortex. 2024 01 14; 34(1). PMID: 37948665; PMCID: PMC10793585.
    Citations: 3
    Fields: BraBrainTranslation:Humans
  17. Calixto C, Machado-Rivas F, Karimi D, Velasco-Annis C, Cortes-Albornoz MC, Afacan O, Warfield SK, Gholipour A, Jaimes C. Population Atlas Analysis of Emerging Brain Structural Connections in the Human Fetus. J Magn Reson Imaging. 2024 Jul; 60(1):152-160. PMID: 37842932; PMCID: PMC11018715.
    Citations: 2
    Fields: DiaDiagnostic ImagingTranslation:Humans
  18. Figtree GA, Vernon ST, Harmer JA, Gray MP, Arnott C, Bachour E, Barsha G, Brieger D, Brown A, Celermajer DS, Channon KM, Chew NWS, Chong JJH, Chow CK, Cistulli PA, Ellinor PT, Grieve SM, Guzik TJ, Hagström E, Jenkins A, Jennings G, Keech AC, Kott KA, Kritharides L, Mamas MA, Mehran R, Meikle PJ, Natarajan P, Negishi K, O'Sullivan J, Patel S, Psaltis PJ, Redfern J, Steg PG, Sullivan DR, Sundström J, Vogel B, Wilson A, Wong D, Bhatt DL, Kovacic JC, Nicholls SJ, CRE for CAD Collaborators. Clinical Pathway for Coronary Atherosclerosis in Patients Without Conventional Modifiable Risk Factors: JACC State-of-the-Art Review. J Am Coll Cardiol. 2023 09 26; 82(13):1343-1359. PMID: 37730292; PMCID: PMC10522922.
    Citations: 15
    Fields: CarCardiologyTranslation:Humans
  19. Han M, Singh M, Karimi D, Kim JY, Flannery SW, BEAR Trial Team, Ecklund K, Murray MM, Fleming BC, Gholipour A, Kiapour AM. LigaNET: A multi-modal deep learning approach to predict the risk of subsequent anterior cruciate ligament injury after surgery. medRxiv. 2023 Jul 27. PMID: 37546855; PMCID: PMC10402234.
    Citations:
  20. Karimi D, Kebiri H, Gholipour A. TBSS++: A novel computational method for Tract-Based Spatial Statistics. bioRxiv. 2023 Jul 11. PMID: 37503293; PMCID: PMC10369867.
    Citations:
  21. Zhu D, Vernon ST, D'Agostino Z, Wu J, Giles C, Chan AS, Kott KA, Gray MP, Gholipour A, Tang O, Beyene HB, Patrick E, Grieve SM, Meikle PJ, Figtree GA, Yang JYH. Lipidomics Profiling and Risk of Coronary Artery Disease in the BioHEART-CT Discovery Cohort. Biomolecules. 2023 05 31; 13(6). PMID: 37371497; PMCID: PMC10296370.
    Citations: 4
    Fields: BioBiochemistryMolMolecular BiologyTranslation:Humans
  22. Wu Y, Gholipour A, Vasung L, Karimi D. A computational framework for characterizing normative development of structural brain connectivity in the perinatal stage. bioRxiv. 2023 Mar 11. PMID: 36945435; PMCID: PMC10029005.
    Citations:
  23. Qin JJ, Obeidy P, Gok M, Gholipour A, Grieve SM. 4D-flow MRI derived wall shear stress for the risk stratification of bicuspid aortic valve aortopathy: A systematic review. Front Cardiovasc Med. 2022; 9:1075833. PMID: 36698944; PMCID: PMC9869052.
    Citations: 5
  24. Qin JJ, Indja B, Gholipour A, Gök M, Grieve SM. Evaluation of Left Ventricular Function Using Four-Dimensional Flow Cardiovascular Magnetic Resonance: A Systematic Review. J Cardiovasc Dev Dis. 2022 Sep 12; 9(9). PMID: 36135449; PMCID: PMC9503592.
    Citations: 3
  25. Karimi D, Gholipour A. Improving Calibration and Out-of-Distribution Detection in Deep Models for Medical Image Segmentation. IEEE Trans Artif Intell. 2023 Apr; 4(2):383-397. PMID: 37868336; PMCID: PMC10586223.
    Citations: 4
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.