KV26KoenVan LeemputKoen Van Leemput, Ph.D.42.37730000000000-71.0525000000000010581Van Leemput, KoenAssistant Professor of Radiologycatalyst:eCommonsLogineCommons Loginprns:coAuthorOfcoauthor ofprns:endDateend dateFaculty Rankprns:fullNamefull nameprns:hasAuthorListauthor listprns:hasFacultyRankhas faculty rankprns:hasNetworkhas networkprns:hasPublicationVenuepublished inprns:informationResourceReferenceinformation resource referenceprns:isPrimaryPositionis primary positionprns:latitudelatitudeprns:longitudelongitudeprns:mainImagephotoprns:maxWeightmaximum weightprns:medlineTAjournal title abbreviationprns:meshDescriptorUIMeSH DescriptorUIprns:meshSemanticGroupNameMeSH semantic group nameprns:minWeightminimum weightprns:numberOfAuthorsnumber of authorsprns:numberOfConnectionsnumber of connectionsprns:numberOfPublicationsnumber of publicationsprns:personIdPerson IDprns:personInPrimaryPositionperson in primary positionprns:physicalNeighborOfphysical neighborprns:positionInDepartmentposition in departmentprns:positionInDivisionposition in divisionprns:predicateNodepredicate nodeprns:principalInvestigatorNameprincipal investigator nameprns:publicationDatepublication dateprns:similarTosimilar toprns:sortOrdersort orderprns:startDatestart dateprns:uniquenessWeightuniqueness weightprns:yearyearAcademic ArticleArticleDocumentbibo:pmidPubMed IdentifierAddressvivo:address1address line 1vivo:address2address line 2vivo:address3address line 3vivo:addressCitycityvivo:addressPostalCodepostal codevivo:addressStatestate or provincevivo:authorInAuthorshipselected publicationsvivo:authorRankauthor rank in publicationAuthorshipDepartmentDivisionGrantvivo:hasResearchArearesearch areasvivo:hasResearcherRoleresearch activitiesvivo:hrJobTitleHR job titleInformation Resourcevivo:linkedAuthorlinked authorvivo:linkedInformationResourcelinked information resourcevivo:mailingAddressmailing addressvivo:personInPositionpositionsPositionvivo:positionInOrganizationposition in organizationvivo:preferredTitlepreferred titleResearcher Rolevivo:researcherRoleOfresearcher role ofvivo:roleContributesTocontributes tovivo:sponsorAwardIdsponsor award idrdf:predicatepredicaterdf:typetyperdfs:labellabelConceptAgentfoaf:firstNamefirst namefoaf:lastNamelast nameOrganizationPerson18171130Van Leemput K, Van den Bulcke T, Dhollander T, De Moor B, Marchal K, van Remortel PArtificial lifeExploring the operational characteristics of inference algorithms for transcriptional networks by means of synthetic data. Artif Life. 2008; 14(1):49-63.Artif Life2008-01-01T00:00:002008Exploring the operational characteristics of inference algorithms for transcriptional networks by means of synthetic data.19376238Fischl B, Stevens AA, Rajendran N, Yeo BT, Greve DN, Van Leemput K, Polimeni JR, Kakunoori S, Buckner RL, Pacheco J, Salat DH, Melcher J, Frosch MP, Hyman BT, Grant PE, Rosen BR, van der Kouwe AJ, Wiggins GC, Wald LL, Augustinack JCNeuroImagePredicting the location of entorhinal cortex from MRI. Neuroimage. 2009 Aug 01; 47(1):8-17.Neuroimage2009-04-16T00:00:002009Predicting the location of entorhinal cortex from MRI.19405131Van Leemput K, Bakkour A, Benner T, Wiggins G, Wald LL, Augustinack J, Dickerson BC, Golland P, Fischl BHippocampusAutomated segmentation of hippocampal subfields from ultra-high resolution in vivo MRI. Hippocampus. 2009 Jun; 19(6):549-57.Hippocampus2009-06-01T00:00:002009Automated segmentation of hippocampal subfields from ultra-high resolution in vivo MRI.23286113Iglesias JE, Sabuncu MR, Van Leemput KMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted InterventionIncorporating parameter uncertainty in Bayesian segmentation models: application to hippocampal subfield volumetry. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):50-7.Med Image Comput Comput Assist Interv2012-01-01T00:00:002012Incorporating parameter uncertainty in Bayesian segmentation models: application to hippocampal subfield volumetry.20594316Laukens K, Hollunder J, Dang TH, De Jaeger G, Kuiper M, Witters E, Verschoren A, Van Leemput KBMC bioinformaticsFlexible network reconstruction from relational databases with Cytoscape and CytoSQL. BMC Bioinformatics. 2010 Jul 01; 11:360.BMC Bioinformatics2010-07-01T00:00:002010Flexible network reconstruction from relational databases with Cytoscape and CytoSQL.18979753Van Leemput K, Bakkour A, Benner T, Wiggins G, Wald LL, Augustinack J, Dickerson BC, Golland P, Fischl BMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted InterventionModel-based segmentation of hippocampal subfields in ultra-high resolution in vivo MRI. Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):235-43.Med Image Comput Comput Assist Interv2008-01-01T00:00:002008Model-based segmentation of hippocampal subfields in ultra-high resolution in vivo MRI.Authorship 132799722960087Augustinack JC, Huber KE, Stevens AA, Roy M, Frosch MP, van der Kouwe AJ, Wald LL, Van Leemput K, McKee AC, Fischl BNeuroImagePredicting the location of human perirhinal cortex, Brodmann's area 35, from MRI. Neuroimage. 2013 Jan 01; 64:32-42.Neuroimage2012-08-30T00:00:002012Predicting the location of human perirhinal cortex, Brodmann's area 35, from MRI.D007090Procedures111133440.381931Image Interpretation, Computer-AssistedD013382Procedures2665270.764905Subtraction TechniqueD015902Devices23350.984496Gamma CamerasD000465Concepts & Ideas4118138720.228252AlgorithmsD010363Physiology42910000.606593Pattern Recognition, AutomatedPathologyPhysical Medicine and RehabilitationRadiologyBrigham and Women's HospitalBoston Children's HospitalMassachusetts General HospitalSpaulding Rehabilitation HospitalJCA2JeanAugustinackJean C. Augustinack, Ph.D.42.37730000000000-71.0525000000000069239Augustinack, JeanAssistant Professor of RadiologyLZ54LillaZolleiLilla Zollei, Ph.D.42.37730000000000-71.0525000000000086486Zollei, LillaAssociate Professor of RadiologySS294SavaSakadzicSava Sakadzic, Ph.D.42.37730000000000-71.0525000000000015220Sakadzic, SavaAssociate Professor of RadiologyAuthorship 1348246PDC8PeterCaravanPeter D. Caravan, Ph.D.42.37730000000000-71.0525000000000019053Caravan, PeterProfessor of RadiologyCW2Carl-FredrikWestinCarl-Fredrik Westin, Ph.D.42.33510370000000-71.1061649000000049006Westin, Carl-FredrikProfessor of RadiologyAuthorship 1157574431129303Jog A, Hoopes A, Greve DN, Van Leemput K, Fischl BNeuroImagePSACNN: Pulse sequence adaptive fast whole brain segmentation. Neuroimage. 2019 10 01; 199:553-569.Neuroimage2019-05-24T00:00:002019PSACNN: Pulse sequence adaptive fast whole brain segmentation.LLW1LawrenceWaldLawrence Leroy Wald, Ph.D.42.37730000000000-71.0525000000000042452Wald, LawrenceProfessor of RadiologyWMW2WilliamWellsWilliam Mercer Wells, Ph.D.42.33510370000000-71.1061649000000066247Wells, WilliamProfessor of RadiologyMF10MatthewFroschMatthew P. Frosch, M.D.,Ph.D.42.36241700000000-71.0689370000000069351Frosch, MatthewProfessor of PathologyCR47ChongzhaoRanChongzhao Ran, Ph.D.42.37730000000000-71.0525000000000017239Ran, ChongzhaoAssociate Professor of RadiologySKW3SimonWarfieldSimon Keith Warfield, Ph.D.42.33743600000000-71.1054470000000021219Warfield, SimonProfessor of RadiologyBRF1BruceFischlBruce R. Fischl, Ph.D.42.37730000000000-71.0525000000000033195Fischl, BruceProfessor of RadiologyVN9VitalyNapadowVitaly J. Napadow, Ph.D.42.37730000000000-71.0525000000000049132Napadow, VitalyProfessor of Physical Medicine and RehabilitationDNG2DouglasGreveDouglas N. Greve, Ph.D.42.37730000000000-71.0525000000000062929Greve, DouglasAssociate Professor of Radiology1128selected publications1.173190.0028621189research areas1.165410.022184317coauthor of28.92524.4811860similar to2024-05-31VAN LEEMPUT, KOEN2019-09-01Computational imaging biomarkers of multiple sclerosisR01NS112161Principal Investigatortrue1Assistant Professor of RadiologyAssistant Professor of Radiologytrue1Professor of RadiologyProfessor of Radiologytrue1Associate Professor of RadiologyAssociate Professor of Radiologytrue1Assistant Professor of RadiologyAssistant Professor of Radiologytrue1Professor of RadiologyProfessor of Radiologytrue1Professor of RadiologyProfessor of RadiologyAuthorship 2168678Principal InvestigatorAuthorship 2536391true1Associate Professor of RadiologyAssociate Professor of Radiologytrue1Associate Professor of RadiologyAssociate Professor of RadiologyAuthorship 1532492736907041Cerri S, Greve DN, Hoopes A, Lundell H, Siebner HR, Mühlau M, Van Leemput KNeuroImage. ClinicalAn open-source tool for longitudinal whole-brain and white matter lesion segmentation. Neuroimage Clin. 2023; 38:103354.Neuroimage Clin2023-03-02T00:00:002023An open-source tool for longitudinal whole-brain and white matter lesion segmentation.true1Professor of PathologyProfessor of Pathologytrue1Associate Professor of RadiologyAssociate Professor of RadiologyAuthorship 1587729737700618Oltmer J, Greve DN, Cerri S, Slepneva N, Llamas-Rodríguez J, Iglesias JE, Van Leemput K, Champion SN, Frosch MP, Augustinack JCThe Journal of comparative neurologyAssessing individual variability of the entorhinal subfields in health and disease. J Comp Neurol. 2023 Dec; 531(18):2062-2079.J Comp Neurol2023-09-12T00:00:002023Assessing individual variability of the entorhinal subfields in health and disease.true1Professor of RadiologyProfessor of Radiologytrue1Professor of Physical Medicine and RehabilitationProfessor of Physical Medicine and Rehabilitationtrue1Professor of RadiologyProfessor of Radiologytrue1Professor of RadiologyProfessor of Radiology23773521Iglesias JE, Sabuncu MR, Van Leemput KMedical image analysisImproved inference in Bayesian segmentation using Monte Carlo sampling: application to hippocampal subfield volumetry. Med Image Anal. 2013 Oct; 17(7):766-78.Med Image Anal2013-05-22T00:00:002013Improved inference in Bayesian segmentation using Monte Carlo sampling: application to hippocampal subfield volumetry.Authorship 5454564Authorship 6885183Authorship 688814324001931Eugenio Iglesias J, Rory Sabuncu M, Van Leemput KMedical image analysisA unified framework for cross-modality multi-atlas segmentation of brain MRI. Med Image Anal. 2013 Dec; 17(8):1181-91.Med Image Anal2013-08-19T00:00:002013A unified framework for cross-modality multi-atlas segmentation of brain MRI.Authorship 7186695Authorship 7108862Authorship 715660324505808Iglesias JE, Sabuncu MR, Van Leemput KMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted InterventionA probabilistic, non-parametric framework for inter-modality label fusion. Med Image Comput Comput Assist Interv. 2013; 16(Pt 3):576-83.Med Image Comput Comput Assist Interv2013-01-01T00:00:002013A probabilistic, non-parametric framework for inter-modality label fusion.24505720Iglesias JE, Konukoglu E, Zikic D, Glocker B, Van Leemput K, Fischl BMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted InterventionIs synthesizing MRI contrast useful for inter-modality analysis? Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):631-8.Med Image Comput Comput Assist Interv2013-01-01T00:00:002013Is synthesizing MRI contrast useful for inter-modality analysis?Authorship 4713172Authorship 7773Authorship 2823041Authorship 7988991225936807Iglesias JE, Augustinack JC, Nguyen K, Player CM, Player A, Wright M, Roy N, Frosch MP, McKee AC, Wald LL, Fischl B, Van Leemput KNeuroImageA computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI. Neuroimage. 2015 Jul 15; 115:117-37.Neuroimage2015-04-29T00:00:002015A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI.Authorship 3099281Authorship 4227402Authorship 4489972Authorship 915843Authorship 4169728Authorship 45161812Assistant Professor1Associate Professor0Full Professor2019-04-30VAN LEEMPUT, KOEN2016-05-01Multi-modal Prediction of Future Clinical DementiaR21AG0501222016-03-31VAN LEEMPUT, KOEN2011-04-01Automated Segmentation of Subregions of the Medial Temporal Lobe in in vivo MRIR01EB013565Principal InvestigatorAuthorship 921544323568278Iglesias JE, Sabuncu MR, Van Leemput KProceedings. IEEE International Symposium on Biomedical ImagingA GENERATIVE MODEL FOR MULTI-ATLAS SEGMENTATION ACROSS MODALITIES. Proc IEEE Int Symp Biomed Imaging. 2012; 888-891.Proc IEEE Int Symp Biomed Imaging2012-01-01T00:00:002012A GENERATIVE MODEL FOR MULTI-ATLAS SEGMENTATION ACROSS MODALITIES.Authorship 953061928126884Fuin N, Pedemonte S, Catalano OA, Izquierdo-Garcia D, Soricelli A, Salvatore M, Heberlein K, Hooker JM, Van Leemput K, Catana CJournal of nuclear medicine : official publication, Society of Nuclear MedicinePET/MRI in the Presence of Metal Implants: Completion of the Attenuation Map from PET Emission Data. J Nucl Med. 2017 05; 58(5):840-845.J Nucl Med2017-01-26T00:00:002017PET/MRI in the Presence of Metal Implants: Completion of the Attenuation Map from PET Emission Data.Authorship 963079325685856Iglesias JE, Sabuncu MR, Van Leemput KMultimodal brain image analysis : second International Workshop, MBIA 2012, held in conjunction with MICCAI 2012, Nice, France, October 1-5, 2012 : proceedings. MBIA (Workshop) (2nd : 2012 : Nice, France)A Generative Model for Probabilistic Label Fusion of Multimodal Data. Multimodal Brain Image Anal (2012). 2012; 7509:115-133.Multimodal Brain Image Anal (2012)2012-01-01T00:00:002012A Generative Model for Probabilistic Label Fusion of Multimodal Data.20426033Sabuncu MR, Yeo BT, Van Leemput K, Vercauteren T, Golland PMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted InterventionAsymmetric image-template registration. Med Image Comput Comput Assist Interv. 2009; 12(Pt 1):565-73.Med Image Comput Comput Assist Interv2009-01-01T00:00:002009Asymmetric image-template registration.Authorship 979350328436919Pedemonte S, Pierce L, Van Leemput KPhysics in medicine and biologyA machine learning method for fast and accurate characterization of depth-of-interaction gamma cameras. Phys Med Biol. 2017 Oct 19; 62(21):8376-8401.Phys Med Biol2017-10-19T00:00:002017A machine learning method for fast and accurate characterization of depth-of-interaction gamma cameras.Authorship 983520828479476Saygin ZM, Kliemann D, Iglesias JE, van der Kouwe AJW, Boyd E, Reuter M, Stevens A, Van Leemput K, McKee A, Frosch MP, Fischl B, Augustinack JCNeuroImageHigh-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas. Neuroimage. 2017 07 15; 155:370-382.Neuroimage2017-05-04T00:00:002017High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas.149 13th StreetMassachusetts General HospitalRadiology, Rm. 2301149 13th StreetCharlestown02129MA19068424Van Leemput KIEEE transactions on medical imagingEncoding probabilistic brain atlases using Bayesian inference. IEEE Trans Med Imaging. 2009 Jun; 28(6):822-37.IEEE Trans Med Imaging2008-12-09T00:00:002008Encoding probabilistic brain atlases using Bayesian inference.16438721Van den Bulcke T, Van Leemput K, Naudts B, van Remortel P, Ma H, Verschoren A, De Moor B, Marchal KBMC bioinformaticsSynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms. BMC Bioinformatics. 2006 Jan 26; 7:43.BMC Bioinformatics2006-01-26T00:00:002006SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms.17493254Michoel T, Maere S, Bonnet E, Joshi A, Saeys Y, Van den Bulcke T, Van Leemput K, van Remortel P, Kuiper M, Marchal K, Van de Peer YBMC bioinformaticsValidating module network learning algorithms using simulated data. BMC Bioinformatics. 2007 May 03; 8 Suppl 2:S5.BMC Bioinformatics2007-05-03T00:00:002007Validating module network learning algorithms using simulated data.18677643Autti TH, Hämäläinen J, Mannerkoski M, Van Leemput KV, Aberg LEJournal of neurologyJNCL patients show marked brain volume alterations on longitudinal MRI in adolescence. J Neurol. 2008 Aug; 255(8):1226-30.J Neurol2008-07-17T00:00:002008JNCL patients show marked brain volume alterations on longitudinal MRI in adolescence.18940828Dang TH, Van Leemput K, Verschoren A, Laukens KBioinformatics (Oxford, England)Prediction of kinase-specific phosphorylation sites using conditional random fields. Bioinformatics. 2008 Dec 15; 24(24):2857-64.Bioinformatics2008-10-20T00:00:002008Prediction of kinase-specific phosphorylation sites using conditional random fields.22003689Sabuncu MR, Van Leemput KMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted InterventionThe Relevance Voxel Machine (RVoxM): a Bayesian method for image-based prediction. Med Image Comput Comput Assist Interv. 2011; 14(Pt 3):99-106.Med Image Comput Comput Assist Interv2011-01-01T00:00:002011The Relevance Voxel Machine (RVoxM): a Bayesian method for image-based prediction.23008245Sabuncu MR, Van Leemput KIEEE transactions on medical imagingThe relevance voxel machine (RVoxM): a self-tuning Bayesian model for informative image-based prediction. IEEE Trans Med Imaging. 2012 Dec; 31(12):2290-306.IEEE Trans Med Imaging2012-09-19T00:00:002012The relevance voxel machine (RVoxM): a self-tuning Bayesian model for informative image-based prediction.