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Denis Madison Agniel, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Beckett MK, Martino SC, Agniel D, Mathews M, Hudson Scholle S, James C, Wilson-Frederick S, Orr N, Darabidian B, Elliott MN. Distinguishing neighborhood and individual social risk factors in health care. Health Serv Res. 2021 Oct 01. PMID: 34596232.
    Citations:    Fields:    
  2. Martino SC, Mathews M, Damberg CL, Mallett JS, Orr N, Ng JH, Agniel D, Tamayo L, Elliott MN. Rates of Disenrollment From Medicare Advantage Plans Are Higher for Racial/Ethnic Minority Beneficiaries. Med Care. 2021 09 01; 59(9):778-784. PMID: 34054025.
    Citations:    Fields:    
  3. Shekelle PG, Pane JD, Agniel D, Shi Y, Rumball-Smith J, Haas A, Fischer S, Rudin RS, Totten M, Lai J, Scanlon D, Damberg CL. Assessment of Variation in Electronic Health Record Capabilities and Reported Clinical Quality Performance in Ambulatory Care Clinics, 2014-2017. JAMA Netw Open. 2021 04 01; 4(4):e217476. PMID: 33885774.
    Citations:    Fields:    Translation:Humans
  4. Mafi JN, Reid RO, Baseman LH, Hickey S, Totten M, Agniel D, Fendrick AM, Sarkisian C, Damberg CL. Trends in Low-Value Health Service Use and Spending in the US Medicare Fee-for-Service Program, 2014-2018. JAMA Netw Open. 2021 02 01; 4(2):e2037328. PMID: 33591365.
    Citations: 2     Fields:    Translation:Humans
  5. Singer SJ, Sinaiko AD, Tietschert MV, Kerrissey M, Phillips RS, Martin V, Joseph G, Bahadurzada H, Agniel D. Care integration within and outside health system boundaries. Health Serv Res. 2020 12; 55 Suppl 3:1033-1048. PMID: 33284521.
    Citations:    Fields:    Translation:Humans
  6. Bogart LM, Barreras JL, Gonzalez A, Klein DJ, Marsh T, Agniel D, Pantalone DW. Pilot Randomized Controlled Trial of an Intervention to Improve Coping with Intersectional Stigma and Medication Adherence Among HIV-Positive Latinx Sexual Minority Men. AIDS Behav. 2021 Jun; 25(6):1647-1660. PMID: 33231847.
    Citations: 2     Fields:    Translation:Humans
  7. Gauthier M, Agniel D, Thiébaut R, Hejblum BP. dearseq: a variance component score test for RNA-seq differential analysis that effectively controls the false discovery rate. NAR Genom Bioinform. 2020 Dec; 2(4):lqaa093. PMID: 33575637.
    Citations: 1     
  8. Agniel D, Haviland A, Shekelle P, Scherling A, Damberg CL. Distinguishing High-Performing Health Systems Using a Composite of Publicly Reported Measures of Ambulatory Care. Ann Intern Med. 2020 11 17; 173(10):791-798. PMID: 32956603.
    Citations: 1     Fields:    
  9. Mathews M, Agniel D, Elliott MN, Martino SC, Guerino P, Orr N, Ng JH, Beckett MK. The development of a patient-reported functional limitations index. Am J Manag Care. 2020 07 01; 26(7):e225-e231. PMID: 32672921.
    Citations:    Fields:    Translation:HumansCells
  10. Agniel D, Parast L. Evaluation of longitudinal surrogate markers. Biometrics. 2021 06; 77(2):477-489. PMID: 32506496.
    Citations:    Fields:    
  11. Agniel D, Almirall D, Burkhart Q, Grant S, Hunter SB, Pedersen ER, Ramchand R, Griffin BA. Identifying optimal level-of-care placement decisions for adolescent substance use treatment. Drug Alcohol Depend. 2020 07 01; 212:107991. PMID: 32408135.
    Citations:    Fields:    Translation:Humans
  12. Beam AL, Fried I, Palmer N, Agniel D, Brat G, Fox K, Kohane I, Sinaiko A, Zupancic JAF, Armstrong J. Estimates of healthcare spending for preterm and low-birthweight infants in a commercially insured population: 2008-2016. J Perinatol. 2020 07; 40(7):1091-1099. PMID: 32103158.
    Citations: 10     Fields:    Translation:Humans
  13. Kranz AM, Mahmud A, Agniel D, Damberg C, Timbie JW. Provision of Social Services and Health Care Quality in US Community Health Centers, 2017. Am J Public Health. 2020 04; 110(4):567-573. PMID: 32078348.
    Citations: 5     Fields:    Translation:Humans
  14. D'Amico EJ, Dickerson DL, Brown RA, Johnson CL, Klein DJ, Agniel D. Motivational interviewing and culture for urban Native American youth (MICUNAY): A randomized controlled trial. J Subst Abuse Treat. 2020 04; 111:86-99. PMID: 32087841.
    Citations: 6     Fields:    Translation:Humans
  15. Elliott MN, Dahlhamer JM, MacCarthy S, Beckett MK, Orr N, Guerino P, Agniel D, Saunders CL, Schuster MA, Ng JH, Martino SC. Using Ancillary Sociodemographic Data to Identify Sexual Minority Adults Among Those Responding "Something Else" or "Don't Know" to Sexual Orientation Questions. Med Care. 2019 12; 57(12):e87-e95. PMID: 31415342.
    Citations: 2     Fields:    Translation:Humans
  16. Agniel D, Martino SC, Burkhart Q, Hambarsoomian K, Orr N, Beckett MK, James C, Scholle SH, Wilson-Frederick S, Ng J, Elliott MN. Incentivizing Excellent Care to At-Risk Groups with a Health Equity Summary Score. J Gen Intern Med. 2021 07; 36(7):1847-1857. PMID: 31713030.
    Citations: 3     Fields:    Translation:Humans
  17. Ridgely MS, Duffy E, Wolf L, Vaiana M, Scanlon D, Buttorff C, Leitzell B, Ahluwalia S, Hilton L, Agniel D, Haviland A, Damberg CL. Understanding U.S. Health Systems: Using Mixed Methods to Unpack Organizational Complexity. EGEMS (Wash DC). 2019 Aug 02; 7(1):39. PMID: 31531385.
    Citations: 8     
  18. Brown RA, Dickerson DL, Klein DJ, Agniel D, Johnson CL, D'Amico EJ. Identifying as American Indian/Alaska Native in Urban Areas: Implications for Adolescent Behavioral Health and Well-Being. Youth Soc. 2021 Jan; 53(1):54-75. PMID: 34176991.
    Citations: 2     
  19. Lipnick SL, Agniel DM, Aggarwal R, Makhortova NR, Finlayson SG, Brocato A, Palmer N, Darras BT, Kohane I, Rubin LL. Systemic nature of spinal muscular atrophy revealed by studying insurance claims. PLoS One. 2019; 14(3):e0213680. PMID: 30870495.
    Citations: 13     Fields:    Translation:Humans
  20. Dickerson DL, Brown RA, Klein DJ, Agniel D, Johnson C, D'Amico EJ. Overt Perceived Discrimination and Racial Microaggressions and their Association with Health Risk Behaviors among a Sample of Urban American Indian/Alaska Native Adolescents. J Racial Ethn Health Disparities. 2019 08; 6(4):733-742. PMID: 30788812.
    Citations: 4     Fields:    Translation:Humans
  21. MacCarthy S, Martino SC, Burkhart Q, Beckett MK, Schuster MA, Quigley DD, Ng JH, Agniel D, Elliott MN. An Integrated Approach to Measuring Sexual Orientation Disparities in Women's Access to Health Services: A National Health Interview Survey Application. LGBT Health. 2019 Feb/Mar; 6(2):87-93. PMID: 30724685.
    Citations: 1     Fields:    Translation:Humans
  22. D'Amico EJ, Dickerson DL, Brown RA, Klein DJ, Agniel D, Johnson C. Unveiling an 'invisible population': health, substance use, sexual behavior, culture, and discrimination among urban American Indian/Alaska Native adolescents in California. Ethn Health. 2021 Aug; 26(6):845-862. PMID: 30626198.
    Citations: 6     Fields:    
  23. Martino SC, Mathews M, Agniel D, Orr N, Wilson-Frederick S, Ng JH, Ormson AE, Elliott MN. National racial/ethnic and geographic disparities in experiences with health care among adult Medicaid beneficiaries. Health Serv Res. 2019 02; 54 Suppl 1:287-296. PMID: 30628052.
    Citations: 7     Fields:    Translation:Humans
  24. Quigley DD, Elliott MN, Hambarsoomian K, Wilson-Frederick SM, Lehrman WG, Agniel D, Ng JH, Goldstein EH, Giordano LA, Martino SC. Inpatient care experiences differ by preferred language within racial/ethnic groups. Health Serv Res. 2019 02; 54 Suppl 1:263-274. PMID: 30613960.
    Citations: 9     Fields:    Translation:Humans
  25. Agniel D, Xie W, Essex M, Cai T. FUNCTIONAL PRINCIPAL VARIANCE COMPONENT TESTING FOR A GENETIC ASSOCIATION STUDY OF HIV PROGRESSION. Ann Appl Stat. 2018 Sep; 12(3):1871-1893. PMID: 32256927.
    Citations: 2     
  26. Antonelli J, Cefalu M, Palmer N, Agniel D. Doubly robust matching estimators for high dimensional confounding adjustment. Biometrics. 2018 12; 74(4):1171-1179. PMID: 29750844.
    Citations: 6     Fields:    Translation:Humans
  27. Agniel D, Kohane IS, Weber GM. Biases in electronic health record data due to processes within the healthcare system: retrospective observational study. BMJ. 2018 04 30; 361:k1479. PMID: 29712648.
    Citations: 62     Fields:    Translation:Humans
  28. Brat GA, Agniel D, Beam A, Yorkgitis B, Bicket M, Homer M, Fox KP, Knecht DB, McMahill-Walraven CN, Palmer N, Kohane I. Postsurgical prescriptions for opioid naive patients and association with overdose and misuse: retrospective cohort study. BMJ. 2018 01 17; 360:j5790. PMID: 29343479.
    Citations: 84     Fields:    Translation:Humans
  29. Grant S, Agniel D, Almirall D, Burkhart Q, Hunter SB, McCaffrey DF, Pedersen ER, Ramchand R, Griffin BA. Developing adaptive interventions for adolescent substance use treatment settings: protocol of an observational, mixed-methods project. Addict Sci Clin Pract. 2017 Dec 19; 12(1):35. PMID: 29254500.
    Citations: 2     Fields:    Translation:Humans
  30. Palmer N, Beam A, Agniel D, Eran A, Manrai A, Spettell C, Steinberg G, Mandl K, Fox K, Nelson SF, Kohane I. Association of Sex With Recurrence of Autism Spectrum Disorder Among Siblings. JAMA Pediatr. 2017 11 01; 171(11):1107-1112. PMID: 28973142.
    Citations: 16     Fields:    Translation:Humans
  31. Agniel D, Hejblum BP. Variance component score test for time-course gene set analysis of longitudinal RNA-seq data. Biostatistics. 2017 Oct 01; 18(4):589-604. PMID: 28334305.
    Citations: 5     Fields:    Translation:Humans
  32. Agniel D, Cai T. Analysis of multiple diverse phenotypes via semiparametric canonical correlation analysis. Biometrics. 2017 12; 73(4):1254-1265. PMID: 28407213.
    Citations: 1     Fields:    Translation:Humans
  33. Xie W, Agniel D, Shevchenko A, Malov SV, Svitin A, Cherkasov N, Baum MK, Campa A, Gaseitsiwe S, Bussmann H, Makhema J, Marlink R, Novitsky V, Lee TH, Cai T, O'Brien SJ, Essex M. Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa. AIDS Res Hum Retroviruses. 2017 06; 33(6):597-609. PMID: 28132517.
    Citations: 3     Fields:    Translation:HumansCells
  34. Agniel D, Liao KP, Cai T. Estimation and testing for multiple regulation of multivariate mixed outcomes. Biometrics. 2016 12; 72(4):1194-1205. PMID: 26910481.
    Citations: 2     Fields:    Translation:Humans
  35. Liao KP, Ananthakrishnan AN, Kumar V, Xia Z, Cagan A, Gainer VS, Goryachev S, Chen P, Savova GK, Agniel D, Churchill S, Lee J, Murphy SN, Plenge RM, Szolovits P, Kohane I, Shaw SY, Karlson EW, Cai T. Methods to Develop an Electronic Medical Record Phenotype Algorithm to Compare the Risk of Coronary Artery Disease across 3 Chronic Disease Cohorts. PLoS One. 2015; 10(8):e0136651. PMID: 26301417.
    Citations: 35     Fields:    Translation:Humans
  36. Wirth KE, Agniel D, Barr CD, Austin MD, DeGruttola V. A composite likelihood approach for estimating HIV prevalence in the presence of spatial variation. Stat Med. 2015 Dec 10; 34(28):3750-9. PMID: 26215657.
    Citations: 1     Fields:    Translation:HumansPHPublic Health
  37. French AL, Evans CT, Agniel DM, Cohen MH, Peters M, Landay AL, Desai SN. Microbial translocation and liver disease progression in women coinfected with HIV and hepatitis C virus. J Infect Dis. 2013 Aug 15; 208(4):679-89. PMID: 23687224.
    Citations: 25     Fields:    Translation:Humans
  38. French AL, Adeyemi OM, Agniel DM, Evans CT, Yin MT, Anastos K, Cohen MH. The association of HIV status with bacterial vaginosis and vitamin D in the United States. J Womens Health (Larchmt). 2011 Oct; 20(10):1497-503. PMID: 21875343.
    Citations: 10     Fields:    Translation:Humans
  39. Adeyemi OM, Agniel D, French AL, Tien PC, Weber K, Glesby MJ, Villacres MC, Sharma A, Merenstein D, Golub ET, Meyer W, Cohen M. Vitamin D deficiency in HIV-infected and HIV-uninfected women in the United States. J Acquir Immune Defic Syndr. 2011 Jul 01; 57(3):197-204. PMID: 21471818.
    Citations: 40     Fields:    Translation:HumansCells
  40. Massad LS, Agniel D, Minkoff H, Watts DH, D'Souza G, Levine AM, Darragh TM, Young M, Cajigas A, Weber K. Effect of stress and depression on the frequency of squamous intraepithelial lesions. J Low Genit Tract Dis. 2011 Jan; 15(1):42-7. PMID: 21192176.
    Citations: 4     Fields:    Translation:Humans
  41. Dubberke ER, Butler AM, Reske KA, Agniel D, Olsen MA, D'Angelo G, McDonald LC, Fraser VJ. Attributable outcomes of endemic Clostridium difficile-associated disease in nonsurgical patients. Emerg Infect Dis. 2008 Jul; 14(7):1031-8. PMID: 18598621.
    Citations: 50     Fields:    Translation:HumansPHPublic Health
  42. Olsen MA, Krauss M, Agniel D, Schootman M, Gentry CN, Yan Y, Damiano RJ, Fraser VJ. Mortality associated with bloodstream infection after coronary artery bypass surgery. Clin Infect Dis. 2008 May 15; 46(10):1537-46. PMID: 18419488.
    Citations: 5     Fields:    Translation:Humans
  43. Marschall J, Agniel D, Fraser VJ, Doherty J, Warren DK. Gram-negative bacteraemia in non-ICU patients: factors associated with inadequate antibiotic therapy and impact on outcomes. J Antimicrob Chemother. 2008 Jun; 61(6):1376-83. PMID: 18344548.
    Citations: 9     Fields:    Translation:HumansCells
  44. Cohen MH, Olszewski Y, Webber MP, Blaney N, Garcia P, Maupin R, Nesheim S, Agniel D, Danner SP, Lampe MA, Bulterys M. Women identified with HIV at labor and delivery: testing, disclosing and linking to care challenges. Matern Child Health J. 2008 Sep; 12(5):568-76. PMID: 17929153.
    Citations: 6     Fields:    Translation:Humans
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.