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Caroline O'Flaherty Buckee, D.Phil.

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Dr. Caroline Buckee joined Harvard School of Public Health in the summer of 2010 as an Assistant Professor of Epidemiology, and was promoted to Associate Professor in 2017. In 2013, Dr. Buckee was named the Associate Director of the Center for Communicable Disease Dynamics.

The Buckee lab uses mathematical models and data science to understand the mechanisms driving the spread of infectious diseases, with a focus on pathogens like malaria that effect vulnerable populations in low income countries. After receiving a D.Phil from the University of Oxford, Caroline worked at the Kenya Medical Research Institute to analyze clinical and epidemiological aspects of malaria as a Sir Henry Wellcome Postdoctoral Fellow. Her work led to an Omidyar Fellowship at the Santa Fe Institute, where she developed theoretical approaches to understanding malaria parasite evolution and ecology. In 2013 Dr. Buckee was named one of MIT Tech Review's 35 Innovators Under 35, a CNN Top 10: Thinker, and Foreign Policy Magazine's Global Thinkers. Her work has appeared in high profile scientific journals such as Science and PNAS, as well as being featured in the popular press, including CNN, The New Scientist, Voice of America, NPR, and ABC.

The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. R35GM124715 (BUCKEE, CAROLINE O'FLAHERTY) Aug 15, 2017 - Jul 31, 2022
    New approaches to measuring and containing the spatial spread of human pathogens
    Role: Principal Investigator
  2. R21GM100207 (BUCKEE, CAROLINE O'FLAHERTY) Feb 1, 2013 - Jan 31, 2015
    An alignment free network approach to analyzing highly recombinant malaria parasi
    Role: Principal Investigator

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Watson JA, Taylor AR, Ashley EA, Dondorp A, Buckee CO, White NJ, Holmes CC. A cautionary note on the use of unsupervised machine learning algorithms to characterise malaria parasite population structure from genetic distance matrices. PLoS Genet. 2020 Oct; 16(10):e1009037. PMID: 33035220.
  2. Grantz KH, Meredith HR, Cummings DAT, Metcalf CJE, Grenfell BT, Giles JR, Mehta S, Solomon S, Labrique A, Kishore N, Buckee CO, Wesolowski A. The use of mobile phone data to inform analysis of COVID-19 pandemic epidemiology. Nat Commun. 2020 09 30; 11(1):4961. PMID: 32999287.
  3. Cevik M, Marcus JL, Buckee C, Smith TC. SARS-CoV-2 transmission dynamics should inform policy. Clin Infect Dis. 2020 Sep 23. PMID: 32964919.
  4. Kissler SM, Kishore N, Prabhu M, Goffman D, Beilin Y, Landau R, Gyamfi-Bannerman C, Bateman BT, Snyder J, Razavi AS, Katz D, Gal J, Bianco A, Stone J, Larremore D, Buckee CO, Grad YH. Reductions in commuting mobility correlate with geographic differences in SARS-CoV-2 prevalence in New York City. Nat Commun. 2020 09 16; 11(1):4674. PMID: 32938924.
  5. Kiang MV, Irizarry RA, Buckee CO, Balsari S. Every Body Counts: Measuring Mortality From the COVID-19 Pandemic. Ann Intern Med. 2020 Sep 11. PMID: 32915654.
  6. Kishore N, Kiang MV, Engø-Monsen K, Vembar N, Schroeder A, Balsari S, Buckee CO. Measuring mobility to monitor travel and physical distancing interventions: a common framework for mobile phone data analysis. Lancet Digit Health. 2020 Nov; 2(11):e622-e628. PMID: 32905027.
  7. Chin T, Kahn R, Li R, Chen JT, Krieger N, Buckee CO, Balsari S, Kiang MV. US-county level variation in intersecting individual, household and community characteristics relevant to COVID-19 and planning an equitable response: a cross-sectional analysis. BMJ Open. 2020 Sep 01; 10(9):e039886. PMID: 32873684.
  8. Chang MC, Kahn R, Li YA, Lee CS, Buckee CO, Chang HH. Variation in human mobility and its impact on the risk of future COVID-19 outbreaks in Taiwan. medRxiv. 2020 Aug 12. PMID: 32817972.
  9. Buckee CO, Johansson MA. Individual model forecasts can be misleading, but together they are useful. Eur J Epidemiol. 2020 Aug; 35(8):731-732. PMID: 32780188.
  10. De Salazar PM, Niehus R, Taylor A, Buckee CO, Lipsitch M. Identifying Locations with Possible Undetected Imported Severe Acute Respiratory Syndrome Coronavirus 2 Cases by Using Importation Predictions. Emerg Infect Dis. 2020 07; 26(7):1465-1469. PMID: 32207679.
  11. Obeng-Adjei N, Larremore DB, Turner L, Ongoiba A, Li S, Doumbo S, Yazew TB, Kayentao K, Miller LH, Traore B, Pierce SK, Buckee CO, Lavstsen T, Crompton PD, Tran TM. Longitudinal analysis of naturally acquired PfEMP1 CIDR domain variant antibodies identifies associations with malaria protection. JCI Insight. 2020 Jun 18; 5(12). PMID: 32427581.
  12. Peak CM, Kahn R, Grad YH, Childs LM, Li R, Lipsitch M, Buckee CO. Individual quarantine versus active monitoring of contacts for the mitigation of COVID-19: a modelling study. Lancet Infect Dis. 2020 09; 20(9):1025-1033. PMID: 32445710.
  13. Holmdahl I, Buckee C. Wrong but Useful - What Covid-19 Epidemiologic Models Can and Cannot Tell Us. N Engl J Med. 2020 Jul 23; 383(4):303-305. PMID: 32412711.
  14. Cai FY, DeSimone TM, Hansen E, Jennings CV, Bei AK, Ahouidi AD, Mboup S, Duraisingh MT, Buckee CO. Accounting for red blood cell accessibility reveals distinct invasion strategies in Plasmodium falciparum strains. PLoS Comput Biol. 2020 04; 16(4):e1007702. PMID: 32315315.
  15. Chin T, Kahn R, Li R, Chen JT, Krieger N, Buckee CO, Balsari S, Kiang MV. U.S. county-level characteristics to inform equitable COVID-19 response. medRxiv. 2020 Apr 11. PMID: 32511610.
  16. Menkir TF, Chin T, Hay JA, Surface E, Martinez de Salazar P, Buckee C, Mina MJ, Khan K, Watts A, Lipsitch M, Niehus R. Estimating the number of undetected COVID-19 cases exported internationally from all of China. medRxiv. 2020 Mar 26. PMID: 32511613.
  17. Buckee CO, Balsari S, Chan J, Crosas M, Dominici F, Gasser U, Grad YH, Grenfell B, Halloran ME, Kraemer MUG, Lipsitch M, Metcalf CJE, Meyers LA, Perkins TA, Santillana M, Scarpino SV, Viboud C, Wesolowski A, Schroeder A. Aggregated mobility data could help fight COVID-19. Science. 2020 04 10; 368(6487):145-146. PMID: 32205458.
  18. Buckee C. Improving epidemic surveillance and response: big data is dead, long live big data. Lancet Digit Health. 2020 May; 2(5):e218-e220. PMID: 32518898.
  19. Peak CM, Kahn R, Grad YH, Childs LM, Li R, Lipsitch M, Buckee CO. Comparative Impact of Individual Quarantine vs. Active Monitoring of Contacts for the Mitigation of COVID-19: a modelling study. medRxiv. 2020 Mar 08. PMID: 32511440.
  20. Sinha I, Sayeed AA, Uddin D, Wesolowski A, Zaman SI, Faiz MA, Ghose A, Rahman MR, Islam A, Karim MJ, Saha A, Rezwan MK, Shamsuzzaman AKM, Jhora ST, Aktaruzzaman MM, Chang HH, Miotto O, Kwiatkowski D, Dondorp AM, Day NPJ, Hossain MA, Buckee C, Maude RJ. Mapping the travel patterns of people with malaria in Bangladesh. BMC Med. 2020 03 04; 18(1):45. PMID: 32127002.
  21. Kahn R, Peak CM, Fernández-Gracia J, Hill A, Jambai A, Ganda L, Castro MC, Buckee CO. Incubation periods impact the spatial predictability of cholera and Ebola outbreaks in Sierra Leone. Proc Natl Acad Sci U S A. 2020 03 03; 117(9):5067-5073. PMID: 32054785.
  22. De Salazar PM, Niehus R, Taylor A, Buckee C, Lipsitch M. Using predicted imports of 2019-nCoV cases to determine locations that may not be identifying all imported cases. medRxiv. 2020 Feb 11. PMID: 32511458.
  23. Chin T, Buckee CO, Mahmud AS. Quantifying the success of measles vaccination campaigns in the Rohingya refugee camps. Epidemics. 2020 Jan 09; 30:100385. PMID: 31951876.
  24. Martinez PP, Mahmud AS, Yunus M, Faruque ASG, Ahmed T, Pascual M, Buckee CO. Tube Well Use as Protection Against Rotavirus Infection During the Monsoons in an Urban Setting. J Infect Dis. 2020 01 02; 221(2):238-242. PMID: 31776559.
  25. Taylor AR, Watson JA, Chu CS, Puaprasert K, Duanguppama J, Day NPJ, Nosten F, Neafsey DE, Buckee CO, Imwong M, White NJ. Resolving the cause of recurrent Plasmodium vivax malaria probabilistically. Nat Commun. 2019 12 06; 10(1):5595. PMID: 31811128.
  26. Kiang MV, Krieger N, Buckee CO, Onnela JP, Chen JT. Decomposition of the US black/white inequality in premature mortality, 2010-2015: an observational study. BMJ Open. 2019 11 19; 9(11):e029373. PMID: 31748287.
  27. Feachem RGA, Chen I, Akbari O, Bertozzi-Villa A, Bhatt S, Binka F, Boni MF, Buckee C, Dieleman J, Dondorp A, Eapen A, Sekhri Feachem N, Filler S, Gething P, Gosling R, Haakenstad A, Harvard K, Hatefi A, Jamison D, Jones KE, Karema C, Kamwi RN, Lal A, Larson E, Lees M, Lobo NF, Micah AE, Moonen B, Newby G, Ning X, Pate M, Quiñones M, Roh M, Rolfe B, Shanks D, Singh B, Staley K, Tulloch J, Wegbreit J, Woo HJ, Mpanju-Shumbusho W. Malaria eradication within a generation: ambitious, achievable, and necessary. Lancet. 2019 09 21; 394(10203):1056-1112. PMID: 31511196.
  28. Kahn R, Mahmud AS, Schroeder A, Aguilar Ramirez LH, Crowley J, Chan J, Buckee CO. Rapid Forecasting of Cholera Risk in Mozambique: Translational Challenges and Opportunities. Prehosp Disaster Med. 2019 Oct; 34(5):557-562. PMID: 31477186.
  29. Taylor AR, Jacob PE, Neafsey DE, Buckee CO. Estimating Relatedness Between Malaria Parasites. Genetics. 2019 08; 212(4):1337-1351. PMID: 31209105.
  30. Chang HH, Wesolowski A, Sinha I, Jacob CG, Mahmud A, Uddin D, Zaman SI, Hossain MA, Faiz MA, Ghose A, Sayeed AA, Rahman MR, Islam A, Karim MJ, Rezwan MK, Shamsuzzaman AKM, Jhora ST, Aktaruzzaman MM, Drury E, Gonçalves S, Kekre M, Dhorda M, Vongpromek R, Miotto O, Engø-Monsen K, Kwiatkowski D, Maude RJ, Buckee C. Mapping imported malaria in Bangladesh using parasite genetic and human mobility data. Elife. 2019 04 02; 8. PMID: 30938289.
  31. Paton DG, Childs LM, Itoe MA, Holmdahl IE, Buckee CO, Catteruccia F. Exposing Anopheles mosquitoes to antimalarials blocks Plasmodium parasite transmission. Nature. 2019 03; 567(7747):239-243. PMID: 30814727.
  32. Georgieva M, Buckee CO, Lipsitch M. Models of immune selection for multi-locus antigenic diversity of pathogens. Nat Rev Immunol. 2019 01; 19(1):55-62. PMID: 30479379.
    Citations:    Fields:    
  33. Wesolowski A, Taylor AR, Chang HH, Verity R, Tessema S, Bailey JA, Alex Perkins T, Neafsey DE, Greenhouse B, Buckee CO. Correction to: Mapping malaria by combining parasite genomic and epidemiologic data. BMC Med. 2018 12 28; 16(1):241. PMID: 30591060.
    Citations:    Fields:    
  34. Wesolowski A, Taylor AR, Chang HH, Verity R, Tessema S, Bailey JA, Alex Perkins T, Neafsey DE, Greenhouse B, Buckee CO. Mapping malaria by combining parasite genomic and epidemiologic data. BMC Med. 2018 10 18; 16(1):190. PMID: 30333020.
    Citations:    Fields:    
  35. Peak CM, Wesolowski A, Zu Erbach-Schoenberg E, Tatem AJ, Wetter E, Lu X, Power D, Weidman-Grunewald E, Ramos S, Moritz S, Buckee CO, Bengtsson L. Population mobility reductions associated with travel restrictions during the Ebola epidemic in Sierra Leone: use of mobile phone data. Int J Epidemiol. 2018 10 01; 47(5):1562-1570. PMID: 29947788.
    Citations:    Fields:    
  36. Ihantamalala FA, Herbreteau V, Rakotoarimanana FMJ, Rakotondramanga JM, Cauchemez S, Rahoilijaona B, Pennober G, Buckee CO, Rogier C, Metcalf CJE, Wesolowski A. Estimating sources and sinks of malaria parasites in Madagascar. Nat Commun. 2018 09 25; 9(1):3897. PMID: 30254280.
    Citations:    Fields:    Translation:HumansAnimalsPHPublic Health
  37. Lam HM, Wesolowski A, Hung NT, Nguyen TD, Nhat NTD, Todd S, Vinh DN, Vy NHT, Thao TTN, Thanh NTL, Tin PT, Minh NNQ, Bryant JE, Buckee CO, Ngoc TV, Chau NVV, Thwaites GE, Farrar J, Tam DTH, Vinh H, Boni MF. Nonannual seasonality of influenza-like illness in a tropical urban setting. Influenza Other Respir Viruses. 2018 11; 12(6):742-754. PMID: 30044029.
    Citations: 1     Fields:    
  38. Recker M, Bull PC, Buckee CO. Recent advances in the molecular epidemiology of clinical malaria. F1000Res. 2018; 7. PMID: 30135713.
  39. Archer NM, Petersen N, Clark MA, Buckee CO, Childs LM, Duraisingh MT. Resistance to Plasmodium falciparum in sickle cell trait erythrocytes is driven by oxygen-dependent growth inhibition. Proc Natl Acad Sci U S A. 2018 07 10; 115(28):7350-7355. PMID: 29946035.
    Citations: 1     Fields:    Translation:HumansAnimalsCells
  40. Wesolowski A, Winter A, Tatem AJ, Qureshi T, Engø-Monsen K, Buckee CO, Cummings DAT, Metcalf CJE. Measles outbreak risk in Pakistan: exploring the potential of combining vaccination coverage and incidence data with novel data-streams to strengthen control. Epidemiol Infect. 2018 09; 146(12):1575-1583. PMID: 29860954.
    Citations:    Fields:    
  41. Kishore N, Marqués D, Mahmud A, Kiang MV, Rodriguez I, Fuller A, Ebner P, Sorensen C, Racy F, Lemery J, Maas L, Leaning J, Irizarry RA, Balsari S, Buckee CO. Mortality in Puerto Rico after Hurricane Maria. N Engl J Med. 2018 Jul 12; 379(2):162-170. PMID: 29809109.
    Citations: 2     Fields:    Translation:Humans
  42. Peak CM, Reilly AL, Azman AS, Buckee CO. Prolonging herd immunity to cholera via vaccination: Accounting for human mobility and waning vaccine effects. PLoS Negl Trop Dis. 2018 02; 12(2):e0006257. PMID: 29489815.
    Citations:    Fields:    Translation:HumansPHPublic Health
  43. Buckee CO, Cardenas MIE, Corpuz J, Ghosh A, Haque F, Karim J, Mahmud AS, Maude RJ, Mensah K, Motaze NV, Nabaggala M, Metcalf CJE, Mioramalala SA, Mubiru F, Peak CM, Pramanik S, Rakotondramanga JM, Remera E, Sinha I, Sovannaroth S, Tatem AJ, Zaw W. Productive disruption: opportunities and challenges for innovation in infectious disease surveillance. BMJ Glob Health. 2018; 3(1):e000538. PMID: 29527343.
    Citations: 3     
  44. Wesolowski A, Zu Erbach-Schoenberg E, Tatem AJ, Lourenço C, Viboud C, Charu V, Eagle N, Engø-Monsen K, Qureshi T, Buckee CO, Metcalf CJE. Multinational patterns of seasonal asymmetry in human movement influence infectious disease dynamics. Nat Commun. 2017 12 12; 8(1):2069. PMID: 29234011.
    Citations: 1     Fields:    Translation:Humans
  45. Taylor AR, Schaffner SF, Cerqueira GC, Nkhoma SC, Anderson TJC, Sriprawat K, Pyae Phyo A, Nosten F, Neafsey DE, Buckee CO. Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent. PLoS Genet. 2017 Oct; 13(10):e1007065. PMID: 29077712.
    Citations: 2     Fields:    Translation:HumansAnimals
  46. Metcalf CJE, Walter KS, Wesolowski A, Buckee CO, Shevliakova E, Tatem AJ, Boos WR, Weinberger DM, Pitzer VE. Identifying climate drivers of infectious disease dynamics: recent advances and challenges ahead. Proc Biol Sci. 2017 Aug 16; 284(1860). PMID: 28814655.
    Citations: 2     Fields:    Translation:HumansAnimals
  47. Molodecky NA, Blake IM, O'Reilly KM, Wadood MZ, Safdar RM, Wesolowski A, Buckee CO, Bandyopadhyay AS, Okayasu H, Grassly NC. Risk factors and short-term projections for serotype-1 poliomyelitis incidence in Pakistan: A spatiotemporal analysis. PLoS Med. 2017 Jun; 14(6):e1002323. PMID: 28604777.
    Citations:    Fields:    Translation:HumansCellsPHPublic Health
  48. Peak CM, Childs LM, Grad YH, Buckee CO. Comparing nonpharmaceutical interventions for containing emerging epidemics. Proc Natl Acad Sci U S A. 2017 04 11; 114(15):4023-4028. PMID: 28351976.
    Citations: 1     Fields:    Translation:HumansPHPublic Health
  49. Chang HH, Worby CJ, Yeka A, Nankabirwa J, Kamya MR, Staedke SG, Dorsey G, Murphy M, Neafsey DE, Jeffreys AE, Hubbart C, Rockett KA, Amato R, Kwiatkowski DP, Buckee CO, Greenhouse B. THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites. PLoS Comput Biol. 2017 01; 13(1):e1005348. PMID: 28125584.
    Citations: 8     Fields:    Translation:HumansAnimalsPHPublic Health
  50. Childs LM, Cai FY, Kakani EG, Mitchell SN, Paton D, Gabrieli P, Buckee CO, Catteruccia F. Disrupting Mosquito Reproduction and Parasite Development for Malaria Control. PLoS Pathog. 2016 Dec; 12(12):e1006060. PMID: 27977810.
    Citations: 4     Fields:    Translation:AnimalsPHPublic Health
  51. Wesolowski A, Buckee CO, Engø-Monsen K, Metcalf CJE. Connecting Mobility to Infectious Diseases: The Promise and Limits of Mobile Phone Data. J Infect Dis. 2016 12 01; 214(suppl_4):S414-S420. PMID: 28830104.
    Citations: 2     Fields:    Translation:Humans
  52. Buckee CO, Tatem AJ, Metcalf CJE. Seasonal Population Movements and the Surveillance and Control of Infectious Diseases. Trends Parasitol. 2017 01; 33(1):10-20. PMID: 27865741.
    Citations: 5     Fields:    Translation:HumansPHPublic Health
  53. Shaw WR, Marcenac P, Childs LM, Buckee CO, Baldini F, Sawadogo SP, Dabiré RK, Diabaté A, Catteruccia F. Wolbachia infections in natural Anopheles populations affect egg laying and negatively correlate with Plasmodium development. Nat Commun. 2016 05 31; 7:11772. PMID: 27243367.
    Citations: 11     Fields:    Translation:AnimalsCells
  54. Chang HH, Meibalan E, Zelin J, Daniels R, Eziefula AC, Meyer EC, Tadesse F, Grignard L, Joice RC, Drakeley C, Wirth DF, Volkman SK, Buckee C, Bousema T, Marti M. Persistence of Plasmodium falciparum parasitemia after artemisinin combination therapy: evidence from a randomized trial in Uganda. Sci Rep. 2016 05 20; 6:26330. PMID: 27197604.
    Citations: 7     Fields:    Translation:HumansAnimals
  55. Chang HH, Childs LM, Buckee CO. Variation in infection length and superinfection enhance selection efficiency in the human malaria parasite. Sci Rep. 2016 05 19; 6:26370. PMID: 27193195.
    Citations: 1     Fields:    Translation:HumansAnimals
  56. Wesolowski A, Mensah K, Brook CE, Andrianjafimasy M, Winter A, Buckee CO, Razafindratsimandresy R, Tatem AJ, Heraud JM, Metcalf CJ. Introduction of rubella-containing-vaccine to Madagascar: implications for roll-out and local elimination. J R Soc Interface. 2016 Apr; 13(117). PMID: 27122178.
    Citations: 2     Fields:    Translation:HumansPHPublic Health
  57. Wilson R, Zu Erbach-Schoenberg E, Albert M, Power D, Tudge S, Gonzalez M, Guthrie S, Chamberlain H, Brooks C, Hughes C, Pitonakova L, Buckee C, Lu X, Wetter E, Tatem A, Bengtsson L. Rapid and Near Real-Time Assessments of Population Displacement Using Mobile Phone Data Following Disasters: The 2015 Nepal Earthquake. PLoS Curr. 2016 Feb 24; 8. PMID: 26981327.
    Citations: 6     
  58. Obaldía N, Dow GS, Gerena L, Kyle D, Otero W, Mantel PY, Baro N, Daniels R, Mukherjee A, Childs LM, Buckee C, Duraisingh MT, Volkman SK, Wirth DF, Marti M. Altered drug susceptibility during host adaptation of a Plasmodium falciparum strain in a non-human primate model. Sci Rep. 2016 Feb 16; 6:21216. PMID: 26880111.
    Citations: 1     Fields:    Translation:Animals
  59. Larremore DB, Sundararaman SA, Liu W, Proto WR, Clauset A, Loy DE, Speede S, Plenderleith LJ, Sharp PM, Hahn BH, Rayner JC, Buckee CO. Ape parasite origins of human malaria virulence genes. Nat Commun. 2015 Oct 12; 6:8368. PMID: 26456841.
    Citations: 12     Fields:    Translation:Animals
  60. Wesolowski A, Qureshi T, Boni MF, Sundsøy PR, Johansson MA, Rasheed SB, Engø-Monsen K, Buckee CO. Impact of human mobility on the emergence of dengue epidemics in Pakistan. Proc Natl Acad Sci U S A. 2015 Sep 22; 112(38):11887-92. PMID: 26351662.
    Citations: 31     Fields:    Translation:HumansPHPublic Health
  61. Wesolowski A, Metcalf CJ, Eagle N, Kombich J, Grenfell BT, Bjørnstad ON, Lessler J, Tatem AJ, Buckee CO. Quantifying seasonal population fluxes driving rubella transmission dynamics using mobile phone data. Proc Natl Acad Sci U S A. 2015 Sep 01; 112(35):11114-9. PMID: 26283349.
    Citations: 10     Fields:    Translation:Humans
  62. Watkins ER, Penman BS, Lourenço J, Buckee CO, Maiden MC, Gupta S. Vaccination Drives Changes in Metabolic and Virulence Profiles of Streptococcus pneumoniae. PLoS Pathog. 2015 Jul; 11(7):e1005034. PMID: 26181911.
    Citations: 12     Fields:    Translation:HumansCellsPHPublic Health
  63. Wesolowski A, O'Meara WP, Eagle N, Tatem AJ, Buckee CO. Evaluating Spatial Interaction Models for Regional Mobility in Sub-Saharan Africa. PLoS Comput Biol. 2015 Jul; 11(7):e1004267. PMID: 26158274.
    Citations: 8     Fields:    Translation:Humans
  64. Nilsson SK, Childs LM, Buckee C, Marti M. Targeting Human Transmission Biology for Malaria Elimination. PLoS Pathog. 2015 Jun; 11(6):e1004871. PMID: 26086192.
    Citations: 19     Fields:    Translation:HumansAnimals
  65. Childs LM, Buckee CO. Dissecting the determinants of malaria chronicity: why within-host models struggle to reproduce infection dynamics. J R Soc Interface. 2015 Mar 06; 12(104):20141379. PMID: 25673299.
    Citations: 9     Fields:    Translation:HumansAnimals
  66. Wesolowski A, O'Meara WP, Tatem AJ, Ndege S, Eagle N, Buckee CO. Quantifying the impact of accessibility on preventive healthcare in sub-Saharan Africa using mobile phone data. Epidemiology. 2015 Mar; 26(2):223-8. PMID: 25643101.
    Citations: 1     Fields:    Translation:HumansPHPublic Health
  67. Childs LM, Abuelezam NN, Dye C, Gupta S, Murray MB, Williams BG, Buckee CO. Modelling challenges in context: lessons from malaria, HIV, and tuberculosis. Epidemics. 2015 Mar; 10:102-7. PMID: 25843394.
    Citations: 2     Fields:    Translation:HumansCells
  68. Peak CM, Thuan PD, Britton A, Nguyen TD, Wolbers M, Thanh NV, Buckee CO, Boni MF. Measuring the association between artemisinin-based case management and malaria incidence in southern Vietnam, 1991-2010. Am J Trop Med Hyg. 2015 Apr; 92(4):811-817. PMID: 25667053.
    Citations: 4     Fields:    Translation:HumansAnimalsPHPublic Health
  69. Bei AK, Diouf A, Miura K, Larremore DB, Ribacke U, Tullo G, Moss EL, Neafsey DE, Daniels RF, Zeituni AE, Nosamiefan I, Volkman SK, Ahouidi AD, Ndiaye D, Dieye T, Mboup S, Buckee CO, Long CA, Wirth DF. Immune characterization of Plasmodium falciparum parasites with a shared genetic signature in a region of decreasing transmission. Infect Immun. 2015 Jan; 83(1):276-85. PMID: 25368109.
    Citations: 2     Fields:    Translation:HumansAnimals
  70. Watkins ER, Grad YH, Gupta S, Buckee CO. Contrasting within- and between-host immune selection shapes Neisseria Opa repertoires. Sci Rep. 2014 Oct 09; 4:6554. PMID: 25296566.
    Citations: 3     Fields:    Translation:HumansCells
  71. Buckee CO. Society: Protect privacy of mobile data. Nature. 2014 Oct 02; 514(7520):35. PMID: 25279910.
    Citations: 1     Fields:    Translation:Humans
  72. Wesolowski A, Buckee CO, Bengtsson L, Wetter E, Lu X, Tatem AJ. Commentary: containing the ebola outbreak - the potential and challenge of mobile network data. PLoS Curr. 2014 Sep 29; 6. PMID: 25642369.
    Citations: 30     
  73. Coleman BI, Skillman KM, Jiang RHY, Childs LM, Altenhofen LM, Ganter M, Leung Y, Goldowitz I, Kafsack BFC, Marti M, Llinás M, Buckee CO, Duraisingh MT. A Plasmodium falciparum histone deacetylase regulates antigenic variation and gametocyte conversion. . 2014 Aug 13; 16(2):177-186. PMID: 25121747.
    Citations: 38     Fields:    Translation:HumansAnimalsCells
  74. Wesolowski A, Stresman G, Eagle N, Stevenson J, Owaga C, Marube E, Bousema T, Drakeley C, Cox J, Buckee CO. Quantifying travel behavior for infectious disease research: a comparison of data from surveys and mobile phones. Sci Rep. 2014 Jul 14; 4:5678. PMID: 25022440.
    Citations: 20     Fields:    Translation:Humans
  75. Smith DL, Perkins TA, Reiner RC, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, Gething PW, Hartley DM, Johnston G, Klein EY, Michael E, Lloyd AL, Pigott DM, Reisen WK, Ruktanonchai N, Singh BK, Stoller J, Tatem AJ, Kitron U, Godfray HC, Cohen JM, Hay SI, Scott TW. Recasting the theory of mosquito-borne pathogen transmission dynamics and control. Trans R Soc Trop Med Hyg. 2014 Apr; 108(4):185-97. PMID: 24591453.
    Citations: 27     Fields:    Translation:HumansAnimals
  76. Penman BS, Ashby B, Buckee CO, Gupta S. Pathogen selection drives nonoverlapping associations between HLA loci. Proc Natl Acad Sci U S A. 2013 Nov 26; 110(48):19645-50. PMID: 24225852.
    Citations: 4     Fields:    Translation:HumansAnimals
  77. Larremore DB, Clauset A, Buckee CO. A network approach to analyzing highly recombinant malaria parasite genes. PLoS Comput Biol. 2013; 9(10):e1003268. PMID: 24130474.
    Citations: 9     Fields:    Translation:HumansAnimalsCells
  78. Warimwe GM, Recker M, Kiragu EW, Buckee CO, Wambua J, Musyoki JN, Marsh K, Bull PC. Plasmodium falciparum var gene expression homogeneity as a marker of the host-parasite relationship under different levels of naturally acquired immunity to malaria. PLoS One. 2013; 8(7):e70467. PMID: 23922996.
    Citations: 9     Fields:    Translation:HumansAnimalsCells
  79. Smith DL, Cohen JM, Chiyaka C, Johnston G, Gething PW, Gosling R, Buckee CO, Laxminarayan R, Hay SI, Tatem AJ. A sticky situation: the unexpected stability of malaria elimination. Philos Trans R Soc Lond B Biol Sci. 2013 Aug 05; 368(1623):20120145. PMID: 23798693.
    Citations: 26     Fields:    Translation:HumansAnimalsPHPublic Health
  80. Hansen E, Buckee CO. Modeling the human infectious reservoir for malaria control: does heterogeneity matter? Trends Parasitol. 2013 Jun; 29(6):270-5. PMID: 23597499.
    Citations: 5     Fields:    Translation:HumansAnimals
  81. Buckee CO, Wesolowski A, Eagle NN, Hansen E, Snow RW. Mobile phones and malaria: modeling human and parasite travel. Travel Med Infect Dis. 2013 Jan-Feb; 11(1):15-22. PMID: 23478045.
    Citations: 14     Fields:    Translation:HumansAnimalsPHPublic Health
  82. Reiner RC, Perkins TA, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, Gething PW, Hartley DM, Johnston G, Klein EY, Michael E, Lindsay SW, Lloyd AL, Pigott DM, Reisen WK, Ruktanonchai N, Singh BK, Tatem AJ, Kitron U, Hay SI, Scott TW, Smith DL. A systematic review of mathematical models of mosquito-borne pathogen transmission: 1970-2010. J R Soc Interface. 2013 Apr 06; 10(81):20120921. PMID: 23407571.
    Citations: 72     Fields:    Translation:Animals
  83. Wesolowski A, Eagle N, Noor AM, Snow RW, Buckee CO. The impact of biases in mobile phone ownership on estimates of human mobility. J R Soc Interface. 2013 Apr 06; 10(81):20120986. PMID: 23389897.
    Citations: 28     Fields:    Translation:Humans
  84. Wesolowski A, Buckee CO, Pindolia DK, Eagle N, Smith DL, Garcia AJ, Tatem AJ. The use of census migration data to approximate human movement patterns across temporal scales. PLoS One. 2013; 8(1):e52971. PMID: 23326367.
    Citations: 21     Fields:    Translation:Humans
  85. Lim C, Hansen E, DeSimone TM, Moreno Y, Junker K, Bei A, Brugnara C, Buckee CO, Duraisingh MT. Expansion of host cellular niche can drive adaptation of a zoonotic malaria parasite to humans. Nat Commun. 2013; 4:1638. PMID: 23535659.
    Citations: 29     Fields:    Translation:HumansAnimalsCells
  86. Wesolowski A, Eagle N, Tatem AJ, Smith DL, Noor AM, Snow RW, Buckee CO. Quantifying the impact of human mobility on malaria. Science. 2012 Oct 12; 338(6104):267-70. PMID: 23066082.
    Citations: 119     Fields:    Translation:HumansAnimalsPHPublic Health
  87. Salathé M, Bengtsson L, Bodnar TJ, Brewer DD, Brownstein JS, Buckee C, Campbell EM, Cattuto C, Khandelwal S, Mabry PL, Vespignani A. Digital epidemiology. PLoS Comput Biol. 2012; 8(7):e1002616. PMID: 22844241.
    Citations: 60     Fields:    Translation:Humans
  88. Pindolia DK, Garcia AJ, Wesolowski A, Smith DL, Buckee CO, Noor AM, Snow RW, Tatem AJ. Human movement data for malaria control and elimination strategic planning. Malar J. 2012 Jun 18; 11:205. PMID: 22703541.
    Citations: 42     Fields:    Translation:HumansAnimalsPHPublic Health
  89. Penman BS, Gupta S, Buckee CO. The emergence and maintenance of sickle cell hotspots in the Mediterranean. Infect Genet Evol. 2012 Oct; 12(7):1543-50. PMID: 22704979.
    Citations: 1     Fields:    Translation:PHPublic Health
  90. Wesolowski A, Eagle N, Noor AM, Snow RW, Buckee CO. Heterogeneous mobile phone ownership and usage patterns in Kenya. PLoS One. 2012; 7(4):e35319. PMID: 22558140.
    Citations: 48     Fields:    Translation:Humans
  91. Buckee CO, Recker M. Evolution of the multi-domain structures of virulence genes in the human malaria parasite, Plasmodium falciparum. PLoS Comput Biol. 2012; 8(4):e1002451. PMID: 22511852.
    Citations: 13     Fields:    Translation:AnimalsCells
  92. Merrick CJ, Huttenhower C, Buckee C, Amambua-Ngwa A, Gomez-Escobar N, Walther M, Conway DJ, Duraisingh MT. Epigenetic dysregulation of virulence gene expression in severe Plasmodium falciparum malaria. J Infect Dis. 2012 May 15; 205(10):1593-600. PMID: 22448008.
    Citations: 15     Fields:    Translation:HumansAnimalsCells
  93. Buckee CO, Recker M, Watkins ER, Gupta S. Role of stochastic processes in maintaining discrete strain structure in antigenically diverse pathogen populations. Proc Natl Acad Sci U S A. 2011 Sep 13; 108(37):15504-9. PMID: 21876129.
    Citations: 9     Fields:    Translation:Cells
  94. Recker M, Buckee CO, Serazin A, Kyes S, Pinches R, Christodoulou Z, Springer AL, Gupta S, Newbold CI. Antigenic variation in Plasmodium falciparum malaria involves a highly structured switching pattern. PLoS Pathog. 2011 Mar; 7(3):e1001306. PMID: 21408201.
    Citations: 48     Fields:    Translation:AnimalsCells
  95. Schultz L, Wapling J, Mueller I, Ntsuke PO, Senn N, Nale J, Kiniboro B, Buckee CO, Tavul L, Siba PM, Reeder JC, Barry AE. Multilocus haplotypes reveal variable levels of diversity and population structure of Plasmodium falciparum in Papua New Guinea, a region of intense perennial transmission. Malar J. 2010 Nov 23; 9:336. PMID: 21092231.
    Citations: 37     Fields:    Translation:HumansAnimalsCells
  96. Penman B, Buckee C, Gupta S, Nee S. Genome-wide association studies in Plasmodium species. BMC Biol. 2010 Jul 13; 8:90. PMID: 20646263.
    Citations: 1     Fields:    Translation:HumansAnimals
  97. Buckee CO, Gupta S, Kriz P, Maiden MC, Jolley KA. Long-term evolution of antigen repertoires among carried meningococci. Proc Biol Sci. 2010 Jun 07; 277(1688):1635-41. PMID: 20129981.
    Citations: 20     Fields:    Translation:HumansCells
  98. Buckee CO, Gupta S. Modelling malaria population structure and its implications for control. Adv Exp Med Biol. 2010; 673:112-26. PMID: 20632533.
    Citations: 1     Fields:    Translation:HumansAnimals
  99. Barry AE, Schultz L, Buckee CO, Reeder JC. Contrasting population structures of the genes encoding ten leading vaccine-candidate antigens of the human malaria parasite, Plasmodium falciparum. PLoS One. 2009 Dec 30; 4(12):e8497. PMID: 20041125.
    Citations: 43     Fields:    Translation:HumansAnimals
  100. Buckee CO, Bull PC, Gupta S. Inferring malaria parasite population structure from serological networks. Proc Biol Sci. 2009 Feb 07; 276(1656):477-85. PMID: 18826933.
    Citations: 12     Fields:    Translation:HumansAnimals
  101. Boni MF, Buckee CO, White NJ. Mathematical models for a new era of malaria eradication. PLoS Med. 2008 Nov 25; 5(11):e231. PMID: 19067482.
    Citations: 4     Fields:    Translation:HumansPHPublic Health
  102. Buckee CO, Jolley KA, Recker M, Penman B, Kriz P, Gupta S, Maiden MC. Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis. Proc Natl Acad Sci U S A. 2008 Sep 30; 105(39):15082-7. PMID: 18815379.
    Citations: 50     Fields:    Translation:HumansCells
  103. Callaghan MJ, Buckee C, McCarthy ND, Ibarz Pavón AB, Jolley KA, Faust S, Gray SJ, Kaczmarski EB, Levin M, Kroll JS, Maiden MC, Pollard AJ. Opa protein repertoires of disease-causing and carried meningococci. J Clin Microbiol. 2008 Sep; 46(9):3033-41. PMID: 18508936.
    Citations: 6     Fields:    Translation:HumansCells
  104. Bull PC, Buckee CO, Kyes S, Kortok MM, Thathy V, Guyah B, Stoute JA, Newbold CI, Marsh K. Plasmodium falciparum antigenic variation. Mapping mosaic var gene sequences onto a network of shared, highly polymorphic sequence blocks. Mol Microbiol. 2008 Jun; 68(6):1519-34. PMID: 18433451.
    Citations: 47     Fields:    Translation:HumansAnimalsCells
  105. Callaghan MJ, Buckee CO, Jolley KA, Kriz P, Maiden MC, Gupta S. The effect of immune selection on the structure of the meningococcal opa protein repertoire. PLoS Pathog. 2008 Mar 14; 4(3):e1000020. PMID: 18369470.
    Citations: 15     Fields:    Translation:HumansCells
  106. Recker M, Arinaminpathy N, Buckee CO. The effects of a partitioned var gene repertoire of Plasmodium falciparum on antigenic diversity and the acquisition of clinical immunity. Malar J. 2008 Jan 23; 7:18. PMID: 18215289.
    Citations: 5     Fields:    Translation:Animals
  107. Stone GN, Atkinson RJ, Rokas A, Aldrey JL, Melika G, Acs Z, Csóka G, Hayward A, Bailey R, Buckee C, McVean GA. Evidence for widespread cryptic sexual generations in apparently purely asexual Andricus gallwasps. Mol Ecol. 2008 Jan; 17(2):652-65. PMID: 18086197.
    Citations: 7     Fields:    Translation:Animals
  108. Buckee C, Danon L, Gupta S. Host community structure and the maintenance of pathogen diversity. Proc Biol Sci. 2007 Jul 22; 274(1619):1715-21. PMID: 17504739.
    Citations: 5     Fields:    
  109. Bull PC, Kyes S, Buckee CO, Montgomery J, Kortok MM, Newbold CI, Marsh K. An approach to classifying sequence tags sampled from Plasmodium falciparum var genes. Mol Biochem Parasitol. 2007 Jul; 154(1):98-102. PMID: 17467073.
    Citations: 25     Fields:    Translation:AnimalsCells
  110. Imoukhuede EB, Andrews L, Milligan P, Berthoud T, Bojang K, Nwakanma D, Ismaili J, Buckee C, Njie F, Keita S, Sowe M, Lang T, Gilbert SC, Greenwood BM, Hill AV. Low-level malaria infections detected by a sensitive polymerase chain reaction assay and use of this technique in the evaluation of malaria vaccines in an endemic area. Am J Trop Med Hyg. 2007 Mar; 76(3):486-93. PMID: 17360872.
    Citations: 13     Fields:    Translation:HumansPHPublic Health
  111. Buckee CO, Koelle K, Mustard MJ, Gupta S. The effects of host contact network structure on pathogen diversity and strain structure. Proc Natl Acad Sci U S A. 2004 Jul 20; 101(29):10839-44. PMID: 15247422.
    Citations: 20     Fields:    Translation:Animals
  112. Hall N, Pain A, Berriman M, Churcher C, Harris B, Harris D, Mungall K, Bowman S, Atkin R, Baker S, Barron A, Brooks K, Buckee CO, Burrows C, Cherevach I, Chillingworth C, Chillingworth T, Christodoulou Z, Clark L, Clark R, Corton C, Cronin A, Davies R, Davis P, Dear P, Dearden F, Doggett J, Feltwell T, Goble A, Goodhead I, Gwilliam R, Hamlin N, Hance Z, Harper D, Hauser H, Hornsby T, Holroyd S, Horrocks P, Humphray S, Jagels K, James KD, Johnson D, Kerhornou A, Knights A, Konfortov B, Kyes S, Larke N, Lawson D, Lennard N, Line A, Maddison M, McLean J, Mooney P, Moule S, Murphy L, Oliver K, Ormond D, Price C, Quail MA, Rabbinowitsch E, Rajandream MA, Rutter S, Rutherford KM, Sanders M, Simmonds M, Seeger K, Sharp S, Smith R, Squares R, Squares S, Stevens K, Taylor K, Tivey A, Unwin L, Whitehead S, Woodward J, Sulston JE, Craig A, Newbold C, Barrell BG. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Nature. 2002 Oct 03; 419(6906):527-31. PMID: 12368867.
    Citations: 44     Fields:    Translation:AnimalsCells
  113. Morgan K, Buckee C, Ayad S, Clague RB, Holt PJ. Diversity of the immune response to bovine type II and XI collagens in rats. Clin Exp Rheumatol. 1991 Jan-Feb; 9(1):3-10. PMID: 1711425.
    Citations: 1     Fields:    Translation:AnimalsCellsPHPublic Health
  114. Buckee C, Morgan K, Ayad S, Collins I, Clague RB, Holt PJ. Diversity of antibodies to type II collagen in patients with rheumatoid arthritis: detection by binding to alpha-chains and to cyanogen bromide peptides. Br J Rheumatol. 1990 Aug; 29(4):254-8. PMID: 2379041.
    Citations: 5     Fields:    Translation:HumansCells
  115. Morgan K, Buckee C, Collins I, Ayad S, Clague RB, Holt PJ. Antibodies to type II and XI collagens: evidence for the formation of antigen specific as well as cross reacting antibodies in patients with rheumatoid arthritis. Ann Rheum Dis. 1988 Dec; 47(12):1008-13. PMID: 3207381.
    Citations: 3     Fields:    Translation:HumansAnimals
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.