Harvard Catalyst Profiles

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Caroline Buckee, D.Phil.

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Overview
overview
Dr. Caroline Buckee joined Harvard School of Public Health in the summer of 2010 as an Assistant Professor of Epidemiology, and was promoted to Associate Professor in 2017. Dr. Buckee was promoted to Professor in 2021. In 2013, Dr. Buckee was named the Associate Director of the Center for Communicable Disease Dynamics.

The Buckee lab uses mathematical models and data science to understand the mechanisms driving the spread of infectious diseases, with a focus on pathogens like malaria that effect vulnerable populations in low income countries. After receiving a D.Phil from the University of Oxford, Caroline worked at the Kenya Medical Research Institute to analyze clinical and epidemiological aspects of malaria as a Sir Henry Wellcome Postdoctoral Fellow. Her work led to an Omidyar Fellowship at the Santa Fe Institute, where she developed theoretical approaches to understanding malaria parasite evolution and ecology. In 2013 Dr. Buckee was named one of MIT Tech Review's 35 Innovators Under 35, a CNN Top 10: Thinker, and Foreign Policy Magazine's Global Thinkers. Her work has appeared in high profile scientific journals such as Science and PNAS, as well as being featured in the popular press, including CNN, The New Scientist, Voice of America, NPR, and ABC.
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Research
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The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
Most Recent  |  List All
  1. R35GM124715 (BUCKEE, CAROLINE O'FLAHERTY) Aug 15, 2017 - Jul 31, 2022
    NIH
    New approaches to measuring and containing the spatial spread of human pathogens
    Role: Principal Investigator
  2. R21GM100207 (BUCKEE, CAROLINE O'FLAHERTY) Feb 1, 2013 - Jan 31, 2016
    NIH
    An alignment free network approach to analyzing highly recombinant malaria parasi
    Role: Principal Investigator

Bibliographic
selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Camponovo F, Buckee CO, Taylor AR. Genomic framework for malaria parasites: challenging but necessary. Trends Parasitol. 2023 Feb 17. PMID: 36804382.
    Citations:    Fields:    
  2. Carrasquilla M, Early AM, Taylor AR, Knudson Ospina A, Echeverry DF, Anderson TJC, Mancilla E, Aponte S, Cárdenas P, Buckee CO, Rayner JC, Sáenz FE, Neafsey DE, Corredor V. Resolving drug selection and migration in an inbred South American Plasmodium falciparum population with identity-by-descent analysis. PLoS Pathog. 2022 12; 18(12):e1010993. PMID: 36542676; PMCID: PMC9815574.
    Citations:    Fields:    Translation:HumansAnimals
  3. Camponovo F, Buckee CO, Taylor AR. Measurably recombining malaria parasites. Trends Parasitol. 2023 01; 39(1):17-25. PMID: 36435688; PMCID: PMC9893849.
    Citations:    Fields:    Translation:HumansAnimals
  4. De Salazar PM, Sosa-Estani S, Salvador F, Sulleiro E, Sánchez-Montalvá A, Ribeiro I, Molina I, Buckee CO. Human Trypanosoma cruzi chronic infection leads to individual level steady-state parasitemia: Implications for drug-trial optimization in Chagas disease. PLoS Negl Trop Dis. 2022 11; 16(11):e0010828. PMID: 36409773; PMCID: PMC9721471.
    Citations:    Fields:    Translation:HumansAnimals
  5. Early AM, Camponovo F, Pelleau S, Cerqueira GC, Lazrek Y, Volney B, Carrasquilla M, de Thoisy B, Buckee CO, Childs LM, Musset L, Neafsey DE. Declines in prevalence alter the optimal level of sexual investment for the malaria parasite Plasmodium falciparum. Proc Natl Acad Sci U S A. 2022 07 26; 119(30):e2122165119. PMID: 35867831; PMCID: PMC9335338.
    Citations:    Fields:    Translation:HumansAnimals
  6. Brown TS, Robinson DA, Buckee CO, Mathema B. Connecting the dots: understanding how human mobility shapes TB epidemics. Trends Microbiol. 2022 11; 30(11):1036-1044. PMID: 35597716.
    Citations:    Fields:    
  7. LaVerriere E, Schwabl P, Carrasquilla M, Taylor AR, Johnson ZM, Shieh M, Panchal R, Straub TJ, Kuzma R, Watson S, Buckee CO, Andrade CM, Portugal S, Crompton PD, Traore B, Rayner JC, Corredor V, James K, Cox H, Early AM, MacInnis BL, Neafsey DE. Design and implementation of multiplexed amplicon sequencing panels to serve genomic epidemiology of infectious disease: A malaria case study. Mol Ecol Resour. 2022 Aug; 22(6):2285-2303. PMID: 35437908; PMCID: PMC9288814.
    Citations: 1     Fields:    Translation:HumansAnimals
  8. Koplewitz G, Lu F, Clemente L, Buckee C, Santillana M. Predicting dengue incidence leveraging internet-based data sources. A case study in 20 cities in Brazil. PLoS Negl Trop Dis. 2022 01; 16(1):e0010071. PMID: 35073316; PMCID: PMC8824328.
    Citations:    Fields:    Translation:HumansPHPublic Health
  9. Buckee C, Balsari S, Schroeder A. Making data for good better. PLOS Digit Health. 2022 Jan; 1(1):e0000010. PMID: 36812507; PMCID: PMC9931324.
    Citations:    
  10. Brown TS, Arogbokun O, Buckee CO, Chang HH. Distinguishing gene flow between malaria parasite populations. PLoS Genet. 2021 12; 17(12):e1009335. PMID: 34928954; PMCID: PMC8726502.
    Citations:    Fields:    Translation:HumansAnimals
  11. Chang HH, Chang MC, Kiang M, Mahmud AS, Ekapirat N, Engø-Monsen K, Sudathip P, Buckee CO, Maude RJ. Low parasite connectivity among three malaria hotspots in Thailand. Sci Rep. 2021 12 02; 11(1):23348. PMID: 34857842; PMCID: PMC8640040.
    Citations:    Fields:    Translation:HumansAnimalsPHPublic Health
  12. Menkir TF, Cox H, Poirier C, Saul M, Jones-Weekes S, Clementson C, M de Salazar P, Santillana M, Buckee CO. A nowcasting framework for correcting for reporting delays in malaria surveillance. PLoS Comput Biol. 2021 11; 17(11):e1009570. PMID: 34784353.
    Citations:    Fields:    Translation:HumansPHPublic Health
  13. Kishore N, Taylor AR, Jacob PE, Vembar N, Cohen T, Buckee CO, Menzies NA. Evaluating the reliability of mobility metrics from aggregated mobile phone data as proxies for SARS-CoV-2 transmission in the USA: a population-based study. Lancet Digit Health. 2022 01; 4(1):e27-e36. PMID: 34740555; PMCID: PMC8563007.
    Citations: 1     Fields:    Translation:HumansCellsPHPublic Health
  14. Brown TS, de Salazar Munoz PM, Bhatia A, Bunda B, Williams EK, Bor D, Miller JS, Mohareb AM, Thierauf J, Yang W, Villalba J, Naranbai V, Beltran WG, Miller TE, Kress D, Stelljes K, Johnson K, Larremore DB, Lennerz J, Iafrate AJ, Balsari S, Buckee CO, Grad YH. Recruitment location influences bias and uncertainty in SARS-CoV-2 seroprevalence estimates. medRxiv. 2021 Oct 05. PMID: 33564784; PMCID: PMC7872379.
    Citations:    
  15. De Salazar PM, Cox H, Imhoff H, Alexandre JSF, Buckee CO. The association between gold mining and malaria in Guyana: a statistical inference and time-series analysis. Lancet Planet Health. 2021 10; 5(10):e731-e738. PMID: 34627477; PMCID: PMC8515511.
    Citations:    Fields:    Translation:Humans
  16. Meredith HR, Giles JR, Perez-Saez J, Mande T, Rinaldo A, Mutembo S, Kabalo EN, Makungo K, Buckee CO, Tatem AJ, Metcalf CJE, Wesolowski A. Characterizing human mobility patterns in rural settings of sub-Saharan Africa. Elife. 2021 09 17; 10. PMID: 34533456.
    Citations:    Fields:    Translation:Humans
  17. Cowley LA, Afrad MH, Rahman SIA, Mamun MMA, Chin T, Mahmud A, Rahman MZ, Billah MM, Khan MH, Sultana S, Khondaker T, Baker S, Banik N, Alam AN, Mannoor K, Banu S, Chowdhury A, Flora MS, Thomson NR, Buckee CO, Qadri F, Shirin T. Genomics, social media and mobile phone data enable mapping of SARS-CoV-2 lineages to inform health policy in Bangladesh. Nat Microbiol. 2021 10; 6(10):1271-1278. PMID: 34497354; PMCID: PMC8478645.
    Citations:    Fields:    Translation:HumansCellsPHPublic Health
  18. Balsari S, Kiang MV, Buckee CO. Data in Crisis - Rethinking Disaster Preparedness in the United States. N Engl J Med. 2021 Oct 14; 385(16):1526-1530. PMID: 34469643; PMCID: PMC8622661.
    Citations:    Fields:    Translation:Humans
  19. Jacob CG, Thuy-Nhien N, Mayxay M, Maude RJ, Quang HH, Hongvanthong B, Vanisaveth V, Ngo Duc T, Rekol H, van der Pluijm R, von Seidlein L, Fairhurst R, Nosten F, Hossain MA, Park N, Goodwin S, Ringwald P, Chindavongsa K, Newton P, Ashley E, Phalivong S, Maude R, Leang R, Huch C, Dong LT, Nguyen KT, Nhat TM, Hien TT, Nguyen H, Zdrojewski N, Canavati S, Sayeed AA, Uddin D, Buckee C, Fanello CI, Onyamboko M, Peto T, Tripura R, Amaratunga C, Myint Thu A, Delmas G, Landier J, Parker DM, Chau NH, Lek D, Suon S, Callery J, Jittamala P, Hanboonkunupakarn B, Pukrittayakamee S, Phyo AP, Smithuis F, Lin K, Thant M, Hlaing TM, Satpathi P, Satpathi S, Behera PK, Tripura A, Baidya S, Valecha N, Anvikar AR, Ul Islam A, Faiz A, Kunasol C, Drury E, Kekre M, Ali M, Love K, Rajatileka S, Jeffreys AE, Rowlands K, Hubbart CS, Dhorda M, Vongpromek R, Kotanan N, Wongnak P, Almagro Garcia J, Pearson RD, Ariani CV, Chookajorn T, Malangone C, Nguyen T, Stalker J, Jeffery B, Keatley J, Johnson KJ, Muddyman D, Chan XHS, Sillitoe J, Amato R, Simpson V, Gonçalves S, Rockett K, Day NP, Dondorp AM, Kwiatkowski DP, Miotto O. Genetic surveillance in the Greater Mekong subregion and South Asia to support malaria control and elimination. Elife. 2021 08 10; 10. PMID: 34372970; PMCID: PMC8354633.
    Citations: 9     Fields:    Translation:AnimalsPHPublic Health
  20. Cevik M, Marcus JL, Buckee C, Smith TC. Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transmission Dynamics Should Inform Policy. Clin Infect Dis. 2021 07 30; 73(Suppl 2):S170-S176. PMID: 32964919.
    Citations: 39     Fields:    Translation:HumansCellsPHPublic Health
  21. Kiang MV, Chen JT, Krieger N, Buckee CO, Alexander MJ, Baker JT, Buckner RL, Coombs G, Rich-Edwards JW, Carlson KW, Onnela JP. Sociodemographic characteristics of missing data in digital phenotyping. Sci Rep. 2021 07 29; 11(1):15408. PMID: 34326370; PMCID: PMC8322366.
    Citations: 5     Fields:    Translation:Humans
  22. Buckee C, Noor A, Sattenspiel L. Thinking clearly about social aspects of infectious disease transmission. Nature. 2021 07; 595(7866):205-213. PMID: 34194045.
    Citations: 10     Fields:    Translation:HumansPHPublic Health
  23. Gnangnon B, Duraisingh MT, Buckee CO. Deconstructing the parasite multiplication rate of Plasmodium falciparum. Trends Parasitol. 2021 10; 37(10):922-932. PMID: 34119440.
    Citations:    Fields:    Translation:HumansAnimalsCells
  24. Holmdahl I, Kahn R, Hay JA, Buckee CO, Mina MJ. Estimation of Transmission of COVID-19 in Simulated Nursing Homes With Frequent Testing and Immunity-Based Staffing. JAMA Netw Open. 2021 05 03; 4(5):e2110071. PMID: 33988707.
    Citations: 16     Fields:    Translation:Humans
  25. Mena GE, Martinez PP, Mahmud AS, Marquet PA, Buckee CO, Santillana M. Socioeconomic status determines COVID-19 incidence and related mortality in Santiago, Chile. Science. 2021 05 28; 372(6545). PMID: 33906968.
    Citations: 56     Fields:    Translation:HumansPHPublic Health
  26. Mahmud AS, Chowdhury S, Sojib KH, Chowdhury A, Quader MT, Paul S, Saidy MS, Uddin R, Engø-Monsen K, Buckee CO. Participatory syndromic surveillance as a tool for tracking COVID-19 in Bangladesh. Epidemics. 2021 06; 35:100462. PMID: 33887643.
    Citations: 3     Fields:    Translation:HumansCellsPHPublic Health
  27. Kishore N, Kahn R, Martinez PP, De Salazar PM, Mahmud AS, Buckee CO. Lockdowns result in changes in human mobility which may impact the epidemiologic dynamics of SARS-CoV-2. Sci Rep. 2021 03 26; 11(1):6995. PMID: 33772076.
    Citations: 5     Fields:    Translation:HumansCellsPHPublic Health
  28. Salje H, Wesolowski A, Brown TS, Kiang MV, Berry IM, Lefrancq N, Fernandez S, Jarman RG, Ruchusatsawat K, Iamsirithaworn S, Vandepitte WP, Suntarattiwong P, Read JM, Klungthong C, Thaisomboonsuk B, Engø-Monsen K, Buckee C, Cauchemez S, Cummings DAT. Reconstructing unseen transmission events to infer dengue dynamics from viral sequences. Nat Commun. 2021 03 22; 12(1):1810. PMID: 33753725; PMCID: PMC7985522.
    Citations: 2     Fields:    Translation:HumansAnimalsCellsPHPublic Health
  29. Larremore DB, Fosdick BK, Bubar KM, Zhang S, Kissler SM, Metcalf CJE, Buckee CO, Grad YH. Estimating SARS-CoV-2 seroprevalence and epidemiological parameters with uncertainty from serological surveys. Elife. 2021 03 05; 10. PMID: 33666169; PMCID: PMC7979159.
    Citations: 24     Fields:    Translation:HumansCellsPHPublic Health
  30. Brown TS, Engø-Monsen K, Kiang MV, Mahmud AS, Maude RJ, Buckee CO. The impact of mobility network properties on predicted epidemic dynamics in Dhaka and Bangkok. Epidemics. 2021 06; 35:100441. PMID: 33667878.
    Citations: 1     Fields:    Translation:HumansCellsPHPublic Health
  31. James LP, Salomon JA, Buckee CO, Menzies NA. The Use and Misuse of Mathematical Modeling for Infectious Disease Policymaking: Lessons for the COVID-19 Pandemic. Med Decis Making. 2021 05; 41(4):379-385. PMID: 33535889.
    Citations: 13     Fields:    Translation:HumansCellsPHPublic Health
  32. Mahmud AS, Kabir MI, Engø-Monsen K, Tahmina S, Riaz BK, Hossain MA, Khanom F, Rahman MM, Rahman MK, Sharmin M, Hossain DM, Yasmin S, Ahmed MM, Lusha MAF, Buckee CO. Megacities as drivers of national outbreaks: The 2017 chikungunya outbreak in Dhaka, Bangladesh. PLoS Negl Trop Dis. 2021 02; 15(2):e0009106. PMID: 33529229.
    Citations: 6     Fields:    Translation:HumansCellsPHPublic Health
  33. Chang MC, Kahn R, Li YA, Lee CS, Buckee CO, Chang HH. Variation in human mobility and its impact on the risk of future COVID-19 outbreaks in Taiwan. BMC Public Health. 2021 01 27; 21(1):226. PMID: 33504339.
    Citations: 17     Fields:    Translation:HumansPHPublic Health
  34. Stern RA, Mahmoudi N, Buckee CO, Schartup AT, Koutrakis P, Ferguson ST, Wolfson JM, Wofsy SC, Daube BC, Sunderland EM. The Microbiome of Size-Fractionated Airborne Particles from the Sahara Region. Environ Sci Technol. 2021 02 02; 55(3):1487-1496. PMID: 33474936.
    Citations: 2     Fields:    Translation:HumansPHPublic Health
  35. Mena G, Martinez PP, Mahmud AS, Marquet PA, Buckee CO, Santillana M. Socioeconomic status determines COVID-19 incidence and related mortality in Santiago, Chile. medRxiv. 2021 Jan 15. PMID: 33469598.
    Citations:    
  36. Kiang MV, Santillana M, Chen JT, Onnela JP, Krieger N, Engø-Monsen K, Ekapirat N, Areechokchai D, Prempree P, Maude RJ, Buckee CO. Incorporating human mobility data improves forecasts of Dengue fever in Thailand. Sci Rep. 2021 01 13; 11(1):923. PMID: 33441598.
    Citations: 6     Fields:    Translation:HumansAnimalsPHPublic Health
  37. Menkir TF, Chin T, Hay JA, Surface ED, De Salazar PM, Buckee CO, Watts A, Khan K, Sherbo R, Yan AWC, Mina MJ, Lipsitch M, Niehus R. Estimating internationally imported cases during the early COVID-19 pandemic. Nat Commun. 2021 01 12; 12(1):311. PMID: 33436574.
    Citations: 7     Fields:    Translation:HumansCellsPHPublic Health
  38. Shaw WR, Holmdahl IE, Itoe MA, Werling K, Marquette M, Paton DG, Singh N, Buckee CO, Childs LM, Catteruccia F. Multiple blood feeding in mosquitoes shortens the Plasmodium falciparum incubation period and increases malaria transmission potential. PLoS Pathog. 2020 12; 16(12):e1009131. PMID: 33382824; PMCID: PMC7774842.
    Citations: 12     Fields:    Translation:AnimalsPHPublic Health
  39. Acosta RJ, Kishore N, Irizarry RA, Buckee CO. Quantifying the dynamics of migration after Hurricane Maria in Puerto Rico. Proc Natl Acad Sci U S A. 2020 12 22; 117(51):32772-32778. PMID: 33293417; PMCID: PMC7768695.
    Citations: 5     Fields:    
  40. Taylor AR, Echeverry DF, Anderson TJC, Neafsey DE, Buckee CO. Identity-by-descent with uncertainty characterises connectivity of Plasmodium falciparum populations on the Colombian-Pacific coast. PLoS Genet. 2020 11; 16(11):e1009101. PMID: 33196661.
    Citations: 3     Fields:    Translation:HumansAnimals
  41. Watson JA, Taylor AR, Ashley EA, Dondorp A, Buckee CO, White NJ, Holmes CC. A cautionary note on the use of unsupervised machine learning algorithms to characterise malaria parasite population structure from genetic distance matrices. PLoS Genet. 2020 10; 16(10):e1009037. PMID: 33035220.
    Citations: 2     Fields:    Translation:HumansAnimals
  42. Grantz KH, Meredith HR, Cummings DAT, Metcalf CJE, Grenfell BT, Giles JR, Mehta S, Solomon S, Labrique A, Kishore N, Buckee CO, Wesolowski A. The use of mobile phone data to inform analysis of COVID-19 pandemic epidemiology. Nat Commun. 2020 09 30; 11(1):4961. PMID: 32999287.
    Citations: 69     Fields:    Translation:HumansCellsPHPublic Health
  43. Kissler SM, Kishore N, Prabhu M, Goffman D, Beilin Y, Landau R, Gyamfi-Bannerman C, Bateman BT, Snyder J, Razavi AS, Katz D, Gal J, Bianco A, Stone J, Larremore D, Buckee CO, Grad YH. Reductions in commuting mobility correlate with geographic differences in SARS-CoV-2 prevalence in New York City. Nat Commun. 2020 09 16; 11(1):4674. PMID: 32938924.
    Citations: 47     Fields:    Translation:HumansCellsPHPublic Health
  44. Kiang MV, Irizarry RA, Buckee CO, Balsari S. Every Body Counts: Measuring Mortality From the COVID-19 Pandemic. Ann Intern Med. 2020 12 15; 173(12):1004-1007. PMID: 32915654; PMCID: PMC7505023.
    Citations: 21     Fields:    Translation:HumansCellsPHPublic Health
  45. Kishore N, Kiang MV, Engø-Monsen K, Vembar N, Schroeder A, Balsari S, Buckee CO. Measuring mobility to monitor travel and physical distancing interventions: a common framework for mobile phone data analysis. Lancet Digit Health. 2020 11; 2(11):e622-e628. PMID: 32905027; PMCID: PMC7462565.
    Citations: 29     Fields:    Translation:HumansPHPublic Health
  46. Chin T, Kahn R, Li R, Chen JT, Krieger N, Buckee CO, Balsari S, Kiang MV. US-county level variation in intersecting individual, household and community characteristics relevant to COVID-19 and planning an equitable response: a cross-sectional analysis. BMJ Open. 2020 Sep 01; 10(9):e039886. PMID: 32873684; PMCID: PMC7467554.
    Citations: 24     Fields:    Translation:HumansCellsPHPublic Health
  47. Chang MC, Kahn R, Li YA, Lee CS, Buckee CO, Chang HH. Variation in human mobility and its impact on the risk of future COVID-19 outbreaks in Taiwan. medRxiv. 2020 Aug 12. PMID: 32817972.
    Citations:    
  48. Buckee CO, Johansson MA. Individual model forecasts can be misleading, but together they are useful. Eur J Epidemiol. 2020 Aug; 35(8):731-732. PMID: 32780188.
    Citations: 2     Fields:    Translation:HumansCellsPHPublic Health
  49. Menkir TF, Chin T, Hay J, Surface ED, De Salazar PM, Buckee CO, Watts A, Khan K, Sherbo R, Yan AWC, Mina M, Lipsitch M, Niehus R. Estimating internationally imported cases during the early COVID-19 pandemic. medRxiv. 2020 Jul 17. PMID: 32511613; PMCID: PMC7276040.
    Citations:    
  50. De Salazar PM, Niehus R, Taylor A, Buckee CO, Lipsitch M. Identifying Locations with Possible Undetected Imported Severe Acute Respiratory Syndrome Coronavirus 2 Cases by Using Importation Predictions. Emerg Infect Dis. 2020 07; 26(7):1465-1469. PMID: 32207679; PMCID: PMC7323530.
    Citations: 19     Fields:    Translation:HumansCellsPHPublic Health
  51. Obeng-Adjei N, Larremore DB, Turner L, Ongoiba A, Li S, Doumbo S, Yazew TB, Kayentao K, Miller LH, Traore B, Pierce SK, Buckee CO, Lavstsen T, Crompton PD, Tran TM. Longitudinal analysis of naturally acquired PfEMP1 CIDR domain variant antibodies identifies associations with malaria protection. JCI Insight. 2020 06 18; 5(12). PMID: 32427581.
    Citations: 6     Fields:    Translation:HumansAnimalsCellsCTClinical Trials
  52. Peak CM, Kahn R, Grad YH, Childs LM, Li R, Lipsitch M, Buckee CO. Individual quarantine versus active monitoring of contacts for the mitigation of COVID-19: a modelling study. Lancet Infect Dis. 2020 09; 20(9):1025-1033. PMID: 32445710.
    Citations: 76     Fields:    Translation:HumansCellsPHPublic Health
  53. Holmdahl I, Buckee C. Wrong but Useful - What Covid-19 Epidemiologic Models Can and Cannot Tell Us. N Engl J Med. 2020 Jul 23; 383(4):303-305. PMID: 32412711.
    Citations: 111     Fields:    Translation:HumansCellsPHPublic Health
  54. Cai FY, DeSimone TM, Hansen E, Jennings CV, Bei AK, Ahouidi AD, Mboup S, Duraisingh MT, Buckee CO. Accounting for red blood cell accessibility reveals distinct invasion strategies in Plasmodium falciparum strains. PLoS Comput Biol. 2020 04; 16(4):e1007702. PMID: 32315315.
    Citations: 1     Fields:    Translation:HumansAnimalsCells
  55. Chin T, Kahn R, Li R, Chen JT, Krieger N, Buckee CO, Balsari S, Kiang MV. U.S. county-level characteristics to inform equitable COVID-19 response. medRxiv. 2020 Apr 11. PMID: 32511610; PMCID: PMC7276037.
    Citations:    
  56. Buckee CO, Balsari S, Chan J, Crosas M, Dominici F, Gasser U, Grad YH, Grenfell B, Halloran ME, Kraemer MUG, Lipsitch M, Metcalf CJE, Meyers LA, Perkins TA, Santillana M, Scarpino SV, Viboud C, Wesolowski A, Schroeder A. Aggregated mobility data could help fight COVID-19. Science. 2020 04 10; 368(6487):145-146. PMID: 32205458.
    Citations: 120     Fields:    Translation:HumansCellsPHPublic Health
  57. Buckee C. Improving epidemic surveillance and response: big data is dead, long live big data. Lancet Digit Health. 2020 05; 2(5):e218-e220. PMID: 32518898.
    Citations: 13     Fields:    Translation:HumansPHPublic Health
  58. Peak CM, Kahn R, Grad YH, Childs LM, Li R, Lipsitch M, Buckee CO. Comparative Impact of Individual Quarantine vs. Active Monitoring of Contacts for the Mitigation of COVID-19: a modelling study. medRxiv. 2020 Mar 08. PMID: 32511440; PMCID: PMC7239061.
    Citations:    
  59. Sinha I, Sayeed AA, Uddin D, Wesolowski A, Zaman SI, Faiz MA, Ghose A, Rahman MR, Islam A, Karim MJ, Saha A, Rezwan MK, Shamsuzzaman AKM, Jhora ST, Aktaruzzaman MM, Chang HH, Miotto O, Kwiatkowski D, Dondorp AM, Day NPJ, Hossain MA, Buckee C, Maude RJ. Mapping the travel patterns of people with malaria in Bangladesh. BMC Med. 2020 03 04; 18(1):45. PMID: 32127002; PMCID: PMC7055101.
    Citations: 4     Fields:    Translation:Humans
  60. Kahn R, Peak CM, Fernández-Gracia J, Hill A, Jambai A, Ganda L, Castro MC, Buckee CO. Incubation periods impact the spatial predictability of cholera and Ebola outbreaks in Sierra Leone. Proc Natl Acad Sci U S A. 2020 03 03; 117(9):5067-5073. PMID: 32054785; PMCID: PMC7060667.
    Citations: 7     Fields:    Translation:HumansPHPublic Health
  61. De Salazar PM, Niehus R, Taylor A, Buckee C, Lipsitch M. Using predicted imports of 2019-nCoV cases to determine locations that may not be identifying all imported cases. medRxiv. 2020 Feb 11. PMID: 32511458; PMCID: PMC7239086.
    Citations:    
  62. Chin T, Buckee CO, Mahmud AS. Quantifying the success of measles vaccination campaigns in the Rohingya refugee camps. Epidemics. 2020 Jan 09; 30:100385. PMID: 31951876.
    Citations: 2     Fields:    
  63. Martinez PP, Mahmud AS, Yunus M, Faruque ASG, Ahmed T, Pascual M, Buckee CO. Tube Well Use as Protection Against Rotavirus Infection During the Monsoons in an Urban Setting. J Infect Dis. 2020 01 02; 221(2):238-242. PMID: 31776559; PMCID: PMC6936003.
    Citations: 1     Fields:    Translation:HumansCells
  64. Taylor AR, Watson JA, Chu CS, Puaprasert K, Duanguppama J, Day NPJ, Nosten F, Neafsey DE, Buckee CO, Imwong M, White NJ. Resolving the cause of recurrent Plasmodium vivax malaria probabilistically. Nat Commun. 2019 12 06; 10(1):5595. PMID: 31811128; PMCID: PMC6898227.
    Citations: 27     Fields:    Translation:HumansAnimals
  65. Kiang MV, Krieger N, Buckee CO, Onnela JP, Chen JT. Decomposition of the US black/white inequality in premature mortality, 2010-2015: an observational study. BMJ Open. 2019 11 19; 9(11):e029373. PMID: 31748287; PMCID: PMC6887068.
    Citations: 2     Fields:    Translation:Humans
  66. Feachem RGA, Chen I, Akbari O, Bertozzi-Villa A, Bhatt S, Binka F, Boni MF, Buckee C, Dieleman J, Dondorp A, Eapen A, Sekhri Feachem N, Filler S, Gething P, Gosling R, Haakenstad A, Harvard K, Hatefi A, Jamison D, Jones KE, Karema C, Kamwi RN, Lal A, Larson E, Lees M, Lobo NF, Micah AE, Moonen B, Newby G, Ning X, Pate M, Quiñones M, Roh M, Rolfe B, Shanks D, Singh B, Staley K, Tulloch J, Wegbreit J, Woo HJ, Mpanju-Shumbusho W. Malaria eradication within a generation: ambitious, achievable, and necessary. Lancet. 2019 09 21; 394(10203):1056-1112. PMID: 31511196.
    Citations: 95     Fields:    Translation:HumansPHPublic Health
  67. Kahn R, Mahmud AS, Schroeder A, Aguilar Ramirez LH, Crowley J, Chan J, Buckee CO. Rapid Forecasting of Cholera Risk in Mozambique: Translational Challenges and Opportunities. Prehosp Disaster Med. 2019 Oct; 34(5):557-562. PMID: 31477186.
    Citations: 8     Fields:    Translation:HumansPHPublic Health
  68. Taylor AR, Jacob PE, Neafsey DE, Buckee CO. Estimating Relatedness Between Malaria Parasites. Genetics. 2019 08; 212(4):1337-1351. PMID: 31209105; PMCID: PMC6707449.
    Citations: 15     Fields:    Translation:Animals
  69. Chang HH, Wesolowski A, Sinha I, Jacob CG, Mahmud A, Uddin D, Zaman SI, Hossain MA, Faiz MA, Ghose A, Sayeed AA, Rahman MR, Islam A, Karim MJ, Rezwan MK, Shamsuzzaman AKM, Jhora ST, Aktaruzzaman MM, Drury E, Gonçalves S, Kekre M, Dhorda M, Vongpromek R, Miotto O, Engø-Monsen K, Kwiatkowski D, Maude RJ, Buckee C. Mapping imported malaria in Bangladesh using parasite genetic and human mobility data. Elife. 2019 04 02; 8. PMID: 30938289; PMCID: PMC6478433.
    Citations: 34     Fields:    Translation:HumansAnimals
  70. Paton DG, Childs LM, Itoe MA, Holmdahl IE, Buckee CO, Catteruccia F. Exposing Anopheles mosquitoes to antimalarials blocks Plasmodium parasite transmission. Nature. 2019 03; 567(7747):239-243. PMID: 30814727.
    Citations: 29     Fields:    Translation:AnimalsPHPublic Health
  71. Georgieva M, Buckee CO, Lipsitch M. Models of immune selection for multi-locus antigenic diversity of pathogens. Nat Rev Immunol. 2019 01; 19(1):55-62. PMID: 30479379; PMCID: PMC6352731.
    Citations: 10     Fields:    Translation:HumansAnimals
  72. Wesolowski A, Taylor AR, Chang HH, Verity R, Tessema S, Bailey JA, Alex Perkins T, Neafsey DE, Greenhouse B, Buckee CO. Correction to: Mapping malaria by combining parasite genomic and epidemiologic data. BMC Med. 2018 12 28; 16(1):241. PMID: 30591060.
    Citations: 3     Fields:    
  73. Wesolowski A, Taylor AR, Chang HH, Verity R, Tessema S, Bailey JA, Alex Perkins T, Neafsey DE, Greenhouse B, Buckee CO. Mapping malaria by combining parasite genomic and epidemiologic data. BMC Med. 2018 10 18; 16(1):190. PMID: 30333020; PMCID: PMC6193293.
    Citations: 34     Fields:    Translation:HumansAnimals
  74. Peak CM, Wesolowski A, Zu Erbach-Schoenberg E, Tatem AJ, Wetter E, Lu X, Power D, Weidman-Grunewald E, Ramos S, Moritz S, Buckee CO, Bengtsson L. Population mobility reductions associated with travel restrictions during the Ebola epidemic in Sierra Leone: use of mobile phone data. Int J Epidemiol. 2018 10 01; 47(5):1562-1570. PMID: 29947788.
    Citations: 35     Fields:    Translation:HumansPHPublic Health
  75. Ihantamalala FA, Herbreteau V, Rakotoarimanana FMJ, Rakotondramanga JM, Cauchemez S, Rahoilijaona B, Pennober G, Buckee CO, Rogier C, Metcalf CJE, Wesolowski A. Estimating sources and sinks of malaria parasites in Madagascar. Nat Commun. 2018 09 25; 9(1):3897. PMID: 30254280.
    Citations: 14     Fields:    Translation:HumansAnimalsPHPublic Health
  76. Lam HM, Wesolowski A, Hung NT, Nguyen TD, Nhat NTD, Todd S, Vinh DN, Vy NHT, Thao TTN, Thanh NTL, Tin PT, Minh NNQ, Bryant JE, Buckee CO, Ngoc TV, Chau NVV, Thwaites GE, Farrar J, Tam DTH, Vinh H, Boni MF. Nonannual seasonality of influenza-like illness in a tropical urban setting. Influenza Other Respir Viruses. 2018 11; 12(6):742-754. PMID: 30044029.
    Citations: 6     Fields:    Translation:HumansCells
  77. Recker M, Bull PC, Buckee CO. Recent advances in the molecular epidemiology of clinical malaria. F1000Res. 2018; 7. PMID: 30135713; PMCID: PMC6073089.
    Citations: 4     Fields:    Translation:HumansAnimals
  78. Archer NM, Petersen N, Clark MA, Buckee CO, Childs LM, Duraisingh MT. Resistance to Plasmodium falciparum in sickle cell trait erythrocytes is driven by oxygen-dependent growth inhibition. Proc Natl Acad Sci U S A. 2018 07 10; 115(28):7350-7355. PMID: 29946035; PMCID: PMC6048551.
    Citations: 29     Fields:    Translation:HumansAnimalsCells
  79. Wesolowski A, Winter A, Tatem AJ, Qureshi T, Engø-Monsen K, Buckee CO, Cummings DAT, Metcalf CJE. Measles outbreak risk in Pakistan: exploring the potential of combining vaccination coverage and incidence data with novel data-streams to strengthen control. Epidemiol Infect. 2018 09; 146(12):1575-1583. PMID: 29860954; PMCID: PMC6090714.
    Citations: 7     Fields:    Translation:HumansPHPublic Health
  80. Kishore N, Marqués D, Mahmud A, Kiang MV, Rodriguez I, Fuller A, Ebner P, Sorensen C, Racy F, Lemery J, Maas L, Leaning J, Irizarry RA, Balsari S, Buckee CO. Mortality in Puerto Rico after Hurricane Maria. N Engl J Med. 2018 Jul 12; 379(2):162-170. PMID: 29809109.
    Citations: 72     Fields:    Translation:Humans
  81. Peak CM, Reilly AL, Azman AS, Buckee CO. Prolonging herd immunity to cholera via vaccination: Accounting for human mobility and waning vaccine effects. PLoS Negl Trop Dis. 2018 02; 12(2):e0006257. PMID: 29489815.
    Citations: 5     Fields:    Translation:HumansPHPublic Health
  82. Buckee CO, Cardenas MIE, Corpuz J, Ghosh A, Haque F, Karim J, Mahmud AS, Maude RJ, Mensah K, Motaze NV, Nabaggala M, Metcalf CJE, Mioramalala SA, Mubiru F, Peak CM, Pramanik S, Rakotondramanga JM, Remera E, Sinha I, Sovannaroth S, Tatem AJ, Zaw W. Productive disruption: opportunities and challenges for innovation in infectious disease surveillance. BMJ Glob Health. 2018; 3(1):e000538. PMID: 29527343.
    Citations: 11     Fields:    
  83. Wesolowski A, Zu Erbach-Schoenberg E, Tatem AJ, Lourenço C, Viboud C, Charu V, Eagle N, Engø-Monsen K, Qureshi T, Buckee CO, Metcalf CJE. Multinational patterns of seasonal asymmetry in human movement influence infectious disease dynamics. Nat Commun. 2017 12 12; 8(1):2069. PMID: 29234011.
    Citations: 34     Fields:    Translation:Humans
  84. Taylor AR, Schaffner SF, Cerqueira GC, Nkhoma SC, Anderson TJC, Sriprawat K, Pyae Phyo A, Nosten F, Neafsey DE, Buckee CO. Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent. PLoS Genet. 2017 Oct; 13(10):e1007065. PMID: 29077712.
    Citations: 38     Fields:    Translation:HumansAnimals
  85. Metcalf CJE, Walter KS, Wesolowski A, Buckee CO, Shevliakova E, Tatem AJ, Boos WR, Weinberger DM, Pitzer VE. Identifying climate drivers of infectious disease dynamics: recent advances and challenges ahead. Proc Biol Sci. 2017 Aug 16; 284(1860). PMID: 28814655; PMCID: PMC5563806.
    Citations: 37     Fields:    Translation:HumansAnimalsPHPublic Health
  86. Molodecky NA, Blake IM, O'Reilly KM, Wadood MZ, Safdar RM, Wesolowski A, Buckee CO, Bandyopadhyay AS, Okayasu H, Grassly NC. Risk factors and short-term projections for serotype-1 poliomyelitis incidence in Pakistan: A spatiotemporal analysis. PLoS Med. 2017 Jun; 14(6):e1002323. PMID: 28604777; PMCID: PMC5467805.
    Citations: 9     Fields:    Translation:HumansCellsPHPublic Health
  87. Peak CM, Childs LM, Grad YH, Buckee CO. Comparing nonpharmaceutical interventions for containing emerging epidemics. Proc Natl Acad Sci U S A. 2017 04 11; 114(15):4023-4028. PMID: 28351976; PMCID: PMC5393248.
    Citations: 93     Fields:    Translation:HumansPHPublic Health
  88. Chang HH, Worby CJ, Yeka A, Nankabirwa J, Kamya MR, Staedke SG, Dorsey G, Murphy M, Neafsey DE, Jeffreys AE, Hubbart C, Rockett KA, Amato R, Kwiatkowski DP, Buckee CO, Greenhouse B. THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites. PLoS Comput Biol. 2017 01; 13(1):e1005348. PMID: 28125584; PMCID: PMC5300274.
    Citations: 41     Fields:    Translation:HumansAnimalsPHPublic Health
  89. Childs LM, Cai FY, Kakani EG, Mitchell SN, Paton D, Gabrieli P, Buckee CO, Catteruccia F. Disrupting Mosquito Reproduction and Parasite Development for Malaria Control. PLoS Pathog. 2016 Dec; 12(12):e1006060. PMID: 27977810.
    Citations: 23     Fields:    Translation:AnimalsPHPublic Health
  90. Wesolowski A, Buckee CO, Engø-Monsen K, Metcalf CJE. Connecting Mobility to Infectious Diseases: The Promise and Limits of Mobile Phone Data. J Infect Dis. 2016 12 01; 214(suppl_4):S414-S420. PMID: 28830104; PMCID: PMC5144902.
    Citations: 60     Fields:    Translation:Humans
  91. Buckee CO, Tatem AJ, Metcalf CJE. Seasonal Population Movements and the Surveillance and Control of Infectious Diseases. Trends Parasitol. 2017 01; 33(1):10-20. PMID: 27865741; PMCID: PMC5423408.
    Citations: 15     Fields:    Translation:HumansPHPublic Health
  92. Shaw WR, Marcenac P, Childs LM, Buckee CO, Baldini F, Sawadogo SP, Dabiré RK, Diabaté A, Catteruccia F. Wolbachia infections in natural Anopheles populations affect egg laying and negatively correlate with Plasmodium development. Nat Commun. 2016 05 31; 7:11772. PMID: 27243367.
    Citations: 47     Fields:    Translation:AnimalsCellsPHPublic Health
  93. Chang HH, Meibalan E, Zelin J, Daniels R, Eziefula AC, Meyer EC, Tadesse F, Grignard L, Joice RC, Drakeley C, Wirth DF, Volkman SK, Buckee C, Bousema T, Marti M. Persistence of Plasmodium falciparum parasitemia after artemisinin combination therapy: evidence from a randomized trial in Uganda. Sci Rep. 2016 05 20; 6:26330. PMID: 27197604; PMCID: PMC4873826.
    Citations: 22     Fields:    Translation:HumansAnimals
  94. Chang HH, Childs LM, Buckee CO. Variation in infection length and superinfection enhance selection efficiency in the human malaria parasite. Sci Rep. 2016 05 19; 6:26370. PMID: 27193195.
    Citations: 5     Fields:    Translation:HumansAnimals
  95. Wesolowski A, Mensah K, Brook CE, Andrianjafimasy M, Winter A, Buckee CO, Razafindratsimandresy R, Tatem AJ, Heraud JM, Metcalf CJ. Introduction of rubella-containing-vaccine to Madagascar: implications for roll-out and local elimination. J R Soc Interface. 2016 Apr; 13(117). PMID: 27122178.
    Citations: 8     Fields:    Translation:HumansPHPublic Health
  96. Wilson R, Zu Erbach-Schoenberg E, Albert M, Power D, Tudge S, Gonzalez M, Guthrie S, Chamberlain H, Brooks C, Hughes C, Pitonakova L, Buckee C, Lu X, Wetter E, Tatem A, Bengtsson L. Rapid and Near Real-Time Assessments of Population Displacement Using Mobile Phone Data Following Disasters: The 2015 Nepal Earthquake. PLoS Curr. 2016 Feb 24; 8. PMID: 26981327.
    Citations: 27     
  97. Obaldía N, Dow GS, Gerena L, Kyle D, Otero W, Mantel PY, Baro N, Daniels R, Mukherjee A, Childs LM, Buckee C, Duraisingh MT, Volkman SK, Wirth DF, Marti M. Altered drug susceptibility during host adaptation of a Plasmodium falciparum strain in a non-human primate model. Sci Rep. 2016 Feb 16; 6:21216. PMID: 26880111.
    Citations: 1     Fields:    Translation:Animals
  98. Larremore DB, Sundararaman SA, Liu W, Proto WR, Clauset A, Loy DE, Speede S, Plenderleith LJ, Sharp PM, Hahn BH, Rayner JC, Buckee CO. Ape parasite origins of human malaria virulence genes. Nat Commun. 2015 Oct 12; 6:8368. PMID: 26456841; PMCID: PMC4633637.
    Citations: 25     Fields:    Translation:Animals
  99. Wesolowski A, Qureshi T, Boni MF, Sundsøy PR, Johansson MA, Rasheed SB, Engø-Monsen K, Buckee CO. Impact of human mobility on the emergence of dengue epidemics in Pakistan. Proc Natl Acad Sci U S A. 2015 Sep 22; 112(38):11887-92. PMID: 26351662; PMCID: PMC4586847.
    Citations: 150     Fields:    Translation:HumansPHPublic Health
  100. Wesolowski A, Metcalf CJ, Eagle N, Kombich J, Grenfell BT, Bjørnstad ON, Lessler J, Tatem AJ, Buckee CO. Quantifying seasonal population fluxes driving rubella transmission dynamics using mobile phone data. Proc Natl Acad Sci U S A. 2015 Sep 01; 112(35):11114-9. PMID: 26283349; PMCID: PMC4568255.
    Citations: 50     Fields:    Translation:Humans
  101. Watkins ER, Penman BS, Lourenço J, Buckee CO, Maiden MC, Gupta S. Vaccination Drives Changes in Metabolic and Virulence Profiles of Streptococcus pneumoniae. PLoS Pathog. 2015 Jul; 11(7):e1005034. PMID: 26181911; PMCID: PMC4504489.
    Citations: 22     Fields:    Translation:HumansCellsPHPublic Health
  102. Wesolowski A, O'Meara WP, Eagle N, Tatem AJ, Buckee CO. Evaluating Spatial Interaction Models for Regional Mobility in Sub-Saharan Africa. PLoS Comput Biol. 2015 Jul; 11(7):e1004267. PMID: 26158274.
    Citations: 37     Fields:    Translation:Humans
  103. Nilsson SK, Childs LM, Buckee C, Marti M. Targeting Human Transmission Biology for Malaria Elimination. PLoS Pathog. 2015 Jun; 11(6):e1004871. PMID: 26086192.
    Citations: 42     Fields:    Translation:HumansAnimals
  104. Childs LM, Buckee CO. Dissecting the determinants of malaria chronicity: why within-host models struggle to reproduce infection dynamics. J R Soc Interface. 2015 Mar 06; 12(104):20141379. PMID: 25673299.
    Citations: 20     Fields:    Translation:HumansAnimals
  105. Wesolowski A, O'Meara WP, Tatem AJ, Ndege S, Eagle N, Buckee CO. Quantifying the impact of accessibility on preventive healthcare in sub-Saharan Africa using mobile phone data. Epidemiology. 2015 Mar; 26(2):223-8. PMID: 25643101.
    Citations: 8     Fields:    Translation:HumansPHPublic Health
  106. Childs LM, Abuelezam NN, Dye C, Gupta S, Murray MB, Williams BG, Buckee CO. Modelling challenges in context: lessons from malaria, HIV, and tuberculosis. Epidemics. 2015 Mar; 10:102-7. PMID: 25843394; PMCID: PMC4451070.
    Citations: 5     Fields:    Translation:HumansCells
  107. Peak CM, Thuan PD, Britton A, Nguyen TD, Wolbers M, Thanh NV, Buckee CO, Boni MF. Measuring the association between artemisinin-based case management and malaria incidence in southern Vietnam, 1991-2010. Am J Trop Med Hyg. 2015 Apr; 92(4):811-817. PMID: 25667053; PMCID: PMC4385779.
    Citations: 6     Fields:    Translation:HumansAnimalsPHPublic Health
  108. Bei AK, Diouf A, Miura K, Larremore DB, Ribacke U, Tullo G, Moss EL, Neafsey DE, Daniels RF, Zeituni AE, Nosamiefan I, Volkman SK, Ahouidi AD, Ndiaye D, Dieye T, Mboup S, Buckee CO, Long CA, Wirth DF. Immune characterization of Plasmodium falciparum parasites with a shared genetic signature in a region of decreasing transmission. Infect Immun. 2015 Jan; 83(1):276-85. PMID: 25368109; PMCID: PMC4288878.
    Citations: 4     Fields:    Translation:HumansAnimals
  109. Watkins ER, Grad YH, Gupta S, Buckee CO. Contrasting within- and between-host immune selection shapes Neisseria Opa repertoires. Sci Rep. 2014 Oct 09; 4:6554. PMID: 25296566.
    Citations: 6     Fields:    Translation:HumansCells
  110. Buckee CO. Society: Protect privacy of mobile data. Nature. 2014 Oct 02; 514(7520):35. PMID: 25279910.
    Citations: 1     Fields:    Translation:Humans
  111. Wesolowski A, Buckee CO, Bengtsson L, Wetter E, Lu X, Tatem AJ. Commentary: containing the ebola outbreak - the potential and challenge of mobile network data. PLoS Curr. 2014 Sep 29; 6. PMID: 25642369.
    Citations: 62     
  112. Coleman BI, Skillman KM, Jiang RHY, Childs LM, Altenhofen LM, Ganter M, Leung Y, Goldowitz I, Kafsack BFC, Marti M, Llinás M, Buckee CO, Duraisingh MT. A Plasmodium falciparum histone deacetylase regulates antigenic variation and gametocyte conversion. Cell Host Microbe. 2014 Aug 13; 16(2):177-186. PMID: 25121747.
    Citations: 92     Fields:    Translation:HumansAnimalsCells
  113. Wesolowski A, Stresman G, Eagle N, Stevenson J, Owaga C, Marube E, Bousema T, Drakeley C, Cox J, Buckee CO. Quantifying travel behavior for infectious disease research: a comparison of data from surveys and mobile phones. Sci Rep. 2014 Jul 14; 4:5678. PMID: 25022440.
    Citations: 50     Fields:    Translation:Humans
  114. Smith DL, Perkins TA, Reiner RC, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, Gething PW, Hartley DM, Johnston G, Klein EY, Michael E, Lloyd AL, Pigott DM, Reisen WK, Ruktanonchai N, Singh BK, Stoller J, Tatem AJ, Kitron U, Godfray HC, Cohen JM, Hay SI, Scott TW. Recasting the theory of mosquito-borne pathogen transmission dynamics and control. Trans R Soc Trop Med Hyg. 2014 Apr; 108(4):185-97. PMID: 24591453; PMCID: PMC3952634.
    Citations: 70     Fields:    Translation:HumansAnimalsPHPublic Health
  115. Penman BS, Ashby B, Buckee CO, Gupta S. Pathogen selection drives nonoverlapping associations between HLA loci. Proc Natl Acad Sci U S A. 2013 Nov 26; 110(48):19645-50. PMID: 24225852; PMCID: PMC3845180.
    Citations: 9     Fields:    Translation:HumansAnimals
  116. Larremore DB, Clauset A, Buckee CO. A network approach to analyzing highly recombinant malaria parasite genes. PLoS Comput Biol. 2013; 9(10):e1003268. PMID: 24130474.
    Citations: 16     Fields:    Translation:HumansAnimalsCells
  117. Warimwe GM, Recker M, Kiragu EW, Buckee CO, Wambua J, Musyoki JN, Marsh K, Bull PC. Plasmodium falciparum var gene expression homogeneity as a marker of the host-parasite relationship under different levels of naturally acquired immunity to malaria. PLoS One. 2013; 8(7):e70467. PMID: 23922996.
    Citations: 15     Fields:    Translation:HumansAnimalsCells
  118. Smith DL, Cohen JM, Chiyaka C, Johnston G, Gething PW, Gosling R, Buckee CO, Laxminarayan R, Hay SI, Tatem AJ. A sticky situation: the unexpected stability of malaria elimination. Philos Trans R Soc Lond B Biol Sci. 2013 Aug 05; 368(1623):20120145. PMID: 23798693; PMCID: PMC3720043.
    Citations: 50     Fields:    Translation:HumansAnimalsPHPublic Health
  119. Hansen E, Buckee CO. Modeling the human infectious reservoir for malaria control: does heterogeneity matter? Trends Parasitol. 2013 Jun; 29(6):270-5. PMID: 23597499.
    Citations: 5     Fields:    Translation:HumansAnimalsPHPublic Health
  120. Buckee CO, Wesolowski A, Eagle NN, Hansen E, Snow RW. Mobile phones and malaria: modeling human and parasite travel. Travel Med Infect Dis. 2013 Jan-Feb; 11(1):15-22. PMID: 23478045.
    Citations: 36     Fields:    Translation:HumansAnimalsPHPublic Health
  121. Reiner RC, Perkins TA, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, Gething PW, Hartley DM, Johnston G, Klein EY, Michael E, Lindsay SW, Lloyd AL, Pigott DM, Reisen WK, Ruktanonchai N, Singh BK, Tatem AJ, Kitron U, Hay SI, Scott TW, Smith DL. A systematic review of mathematical models of mosquito-borne pathogen transmission: 1970-2010. J R Soc Interface. 2013 Apr 06; 10(81):20120921. PMID: 23407571; PMCID: PMC3627099.
    Citations: 160     Fields:    Translation:AnimalsPHPublic Health
  122. Wesolowski A, Eagle N, Noor AM, Snow RW, Buckee CO. The impact of biases in mobile phone ownership on estimates of human mobility. J R Soc Interface. 2013 Apr 06; 10(81):20120986. PMID: 23389897.
    Citations: 55     Fields:    Translation:Humans
  123. Wesolowski A, Buckee CO, Pindolia DK, Eagle N, Smith DL, Garcia AJ, Tatem AJ. The use of census migration data to approximate human movement patterns across temporal scales. PLoS One. 2013; 8(1):e52971. PMID: 23326367.
    Citations: 35     Fields:    Translation:Humans
  124. Lim C, Hansen E, DeSimone TM, Moreno Y, Junker K, Bei A, Brugnara C, Buckee CO, Duraisingh MT. Expansion of host cellular niche can drive adaptation of a zoonotic malaria parasite to humans. Nat Commun. 2013; 4:1638. PMID: 23535659.
    Citations: 61     Fields:    Translation:HumansAnimalsCells
  125. Wesolowski A, Eagle N, Tatem AJ, Smith DL, Noor AM, Snow RW, Buckee CO. Quantifying the impact of human mobility on malaria. Science. 2012 Oct 12; 338(6104):267-70. PMID: 23066082.
    Citations: 305     Fields:    Translation:HumansAnimalsPHPublic Health
  126. Salathé M, Bengtsson L, Bodnar TJ, Brewer DD, Brownstein JS, Buckee C, Campbell EM, Cattuto C, Khandelwal S, Mabry PL, Vespignani A. Digital epidemiology. PLoS Comput Biol. 2012; 8(7):e1002616. PMID: 22844241.
    Citations: 158     Fields:    Translation:Humans
  127. Pindolia DK, Garcia AJ, Wesolowski A, Smith DL, Buckee CO, Noor AM, Snow RW, Tatem AJ. Human movement data for malaria control and elimination strategic planning. Malar J. 2012 Jun 18; 11:205. PMID: 22703541.
    Citations: 76     Fields:    Translation:HumansAnimalsPHPublic Health
  128. Penman BS, Gupta S, Buckee CO. The emergence and maintenance of sickle cell hotspots in the Mediterranean. Infect Genet Evol. 2012 Oct; 12(7):1543-50. PMID: 22704979.
    Citations: 4     Fields:    Translation:PHPublic Health
  129. Wesolowski A, Eagle N, Noor AM, Snow RW, Buckee CO. Heterogeneous mobile phone ownership and usage patterns in Kenya. PLoS One. 2012; 7(4):e35319. PMID: 22558140.
    Citations: 78     Fields:    Translation:Humans
  130. Buckee CO, Recker M. Evolution of the multi-domain structures of virulence genes in the human malaria parasite, Plasmodium falciparum. PLoS Comput Biol. 2012; 8(4):e1002451. PMID: 22511852.
    Citations: 17     Fields:    Translation:AnimalsCells
  131. Merrick CJ, Huttenhower C, Buckee C, Amambua-Ngwa A, Gomez-Escobar N, Walther M, Conway DJ, Duraisingh MT. Epigenetic dysregulation of virulence gene expression in severe Plasmodium falciparum malaria. J Infect Dis. 2012 May 15; 205(10):1593-600. PMID: 22448008; PMCID: PMC3415821.
    Citations: 28     Fields:    Translation:HumansAnimalsCells
  132. Buckee CO, Recker M, Watkins ER, Gupta S. Role of stochastic processes in maintaining discrete strain structure in antigenically diverse pathogen populations. Proc Natl Acad Sci U S A. 2011 Sep 13; 108(37):15504-9. PMID: 21876129.
    Citations: 19     Fields:    Translation:Cells
  133. Recker M, Buckee CO, Serazin A, Kyes S, Pinches R, Christodoulou Z, Springer AL, Gupta S, Newbold CI. Antigenic variation in Plasmodium falciparum malaria involves a highly structured switching pattern. PLoS Pathog. 2011 Mar; 7(3):e1001306. PMID: 21408201.
    Citations: 64     Fields:    Translation:AnimalsCells
  134. Schultz L, Wapling J, Mueller I, Ntsuke PO, Senn N, Nale J, Kiniboro B, Buckee CO, Tavul L, Siba PM, Reeder JC, Barry AE. Multilocus haplotypes reveal variable levels of diversity and population structure of Plasmodium falciparum in Papua New Guinea, a region of intense perennial transmission. Malar J. 2010 Nov 23; 9:336. PMID: 21092231.
    Citations: 55     Fields:    Translation:HumansAnimalsCells
  135. Penman B, Buckee C, Gupta S, Nee S. Genome-wide association studies in Plasmodium species. BMC Biol. 2010 Jul 13; 8:90. PMID: 20646263.
    Citations: 1     Fields:    Translation:HumansAnimals
  136. Buckee CO, Gupta S, Kriz P, Maiden MC, Jolley KA. Long-term evolution of antigen repertoires among carried meningococci. Proc Biol Sci. 2010 Jun 07; 277(1688):1635-41. PMID: 20129981.
    Citations: 24     Fields:    Translation:HumansCells
  137. Buckee CO, Gupta S. Modelling malaria population structure and its implications for control. Adv Exp Med Biol. 2010; 673:112-26. PMID: 20632533.
    Citations: 4     Fields:    Translation:HumansAnimalsPHPublic Health
  138. Barry AE, Schultz L, Buckee CO, Reeder JC. Contrasting population structures of the genes encoding ten leading vaccine-candidate antigens of the human malaria parasite, Plasmodium falciparum. PLoS One. 2009 Dec 30; 4(12):e8497. PMID: 20041125.
    Citations: 56     Fields:    Translation:HumansAnimals
  139. Buckee CO, Bull PC, Gupta S. Inferring malaria parasite population structure from serological networks. Proc Biol Sci. 2009 Feb 07; 276(1656):477-85. PMID: 18826933.
    Citations: 14     Fields:    Translation:HumansAnimals
  140. Boni MF, Buckee CO, White NJ. Mathematical models for a new era of malaria eradication. PLoS Med. 2008 Nov 25; 5(11):e231. PMID: 19067482.
    Citations: 6     Fields:    Translation:HumansPHPublic Health
  141. Buckee CO, Jolley KA, Recker M, Penman B, Kriz P, Gupta S, Maiden MC. Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis. Proc Natl Acad Sci U S A. 2008 Sep 30; 105(39):15082-7. PMID: 18815379; PMCID: PMC2553036.
    Citations: 68     Fields:    Translation:HumansCells
  142. Callaghan MJ, Buckee C, McCarthy ND, Ibarz Pavón AB, Jolley KA, Faust S, Gray SJ, Kaczmarski EB, Levin M, Kroll JS, Maiden MC, Pollard AJ. Opa protein repertoires of disease-causing and carried meningococci. J Clin Microbiol. 2008 Sep; 46(9):3033-41. PMID: 18508936.
    Citations: 7     Fields:    Translation:HumansCells
  143. Bull PC, Buckee CO, Kyes S, Kortok MM, Thathy V, Guyah B, Stoute JA, Newbold CI, Marsh K. Plasmodium falciparum antigenic variation. Mapping mosaic var gene sequences onto a network of shared, highly polymorphic sequence blocks. Mol Microbiol. 2008 Jun; 68(6):1519-34. PMID: 18433451.
    Citations: 58     Fields:    Translation:HumansAnimalsCells
  144. Callaghan MJ, Buckee CO, Jolley KA, Kriz P, Maiden MC, Gupta S. The effect of immune selection on the structure of the meningococcal opa protein repertoire. PLoS Pathog. 2008 Mar 14; 4(3):e1000020. PMID: 18369470.
    Citations: 17     Fields:    Translation:HumansCells
  145. Recker M, Arinaminpathy N, Buckee CO. The effects of a partitioned var gene repertoire of Plasmodium falciparum on antigenic diversity and the acquisition of clinical immunity. Malar J. 2008 Jan 23; 7:18. PMID: 18215289.
    Citations: 5     Fields:    Translation:Animals
  146. Stone GN, Atkinson RJ, Rokas A, Aldrey JL, Melika G, Acs Z, Csóka G, Hayward A, Bailey R, Buckee C, McVean GA. Evidence for widespread cryptic sexual generations in apparently purely asexual Andricus gallwasps. Mol Ecol. 2008 Jan; 17(2):652-65. PMID: 18086197.
    Citations: 10     Fields:    Translation:Animals
  147. Buckee C, Danon L, Gupta S. Host community structure and the maintenance of pathogen diversity. Proc Biol Sci. 2007 Jul 22; 274(1619):1715-21. PMID: 17504739; PMCID: PMC2493584.
    Citations: 14     Fields:    
  148. Bull PC, Kyes S, Buckee CO, Montgomery J, Kortok MM, Newbold CI, Marsh K. An approach to classifying sequence tags sampled from Plasmodium falciparum var genes. Mol Biochem Parasitol. 2007 Jul; 154(1):98-102. PMID: 17467073; PMCID: PMC1906845.
    Citations: 33     Fields:    Translation:AnimalsCells
  149. Imoukhuede EB, Andrews L, Milligan P, Berthoud T, Bojang K, Nwakanma D, Ismaili J, Buckee C, Njie F, Keita S, Sowe M, Lang T, Gilbert SC, Greenwood BM, Hill AV. Low-level malaria infections detected by a sensitive polymerase chain reaction assay and use of this technique in the evaluation of malaria vaccines in an endemic area. Am J Trop Med Hyg. 2007 Mar; 76(3):486-93. PMID: 17360872; PMCID: PMC3836239.
    Citations: 15     Fields:    Translation:HumansPHPublic Health
  150. Buckee CO, Koelle K, Mustard MJ, Gupta S. The effects of host contact network structure on pathogen diversity and strain structure. Proc Natl Acad Sci U S A. 2004 Jul 20; 101(29):10839-44. PMID: 15247422; PMCID: PMC490021.
    Citations: 33     Fields:    Translation:Animals
  151. Hall N, Pain A, Berriman M, Churcher C, Harris B, Harris D, Mungall K, Bowman S, Atkin R, Baker S, Barron A, Brooks K, Buckee CO, Burrows C, Cherevach I, Chillingworth C, Chillingworth T, Christodoulou Z, Clark L, Clark R, Corton C, Cronin A, Davies R, Davis P, Dear P, Dearden F, Doggett J, Feltwell T, Goble A, Goodhead I, Gwilliam R, Hamlin N, Hance Z, Harper D, Hauser H, Hornsby T, Holroyd S, Horrocks P, Humphray S, Jagels K, James KD, Johnson D, Kerhornou A, Knights A, Konfortov B, Kyes S, Larke N, Lawson D, Lennard N, Line A, Maddison M, McLean J, Mooney P, Moule S, Murphy L, Oliver K, Ormond D, Price C, Quail MA, Rabbinowitsch E, Rajandream MA, Rutter S, Rutherford KM, Sanders M, Simmonds M, Seeger K, Sharp S, Smith R, Squares R, Squares S, Stevens K, Taylor K, Tivey A, Unwin L, Whitehead S, Woodward J, Sulston JE, Craig A, Newbold C, Barrell BG. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Nature. 2002 Oct 03; 419(6906):527-31. PMID: 12368867.
    Citations: 55     Fields:    Translation:AnimalsCells
  152. Morgan K, Buckee C, Ayad S, Clague RB, Holt PJ. Diversity of the immune response to bovine type II and XI collagens in rats. Clin Exp Rheumatol. 1991 Jan-Feb; 9(1):3-10. PMID: 1711425.
    Citations: 1     Fields:    Translation:AnimalsCellsPHPublic Health
  153. Buckee C, Morgan K, Ayad S, Collins I, Clague RB, Holt PJ. Diversity of antibodies to type II collagen in patients with rheumatoid arthritis: detection by binding to alpha-chains and to cyanogen bromide peptides. Br J Rheumatol. 1990 Aug; 29(4):254-8. PMID: 2379041.
    Citations: 5     Fields:    Translation:HumansCells
  154. Morgan K, Buckee C, Collins I, Ayad S, Clague RB, Holt PJ. Antibodies to type II and XI collagens: evidence for the formation of antigen specific as well as cross reacting antibodies in patients with rheumatoid arthritis. Ann Rheum Dis. 1988 Dec; 47(12):1008-13. PMID: 3207381; PMCID: PMC1003656.
    Citations: 3     Fields:    Translation:HumansAnimals
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.