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profileCaroline O'Flaherty Buckee, D.Phil.

TitleAssistant Professor of Epidemiology
InstitutionHarvard T.H. Chan School of Public Health
DepartmentEpidemiology
AddressHarvard School of Public Health
Kresge Bldg 5th floor, Room 506E
677 Huntington Ave
Boston MA 02115
Phone617/432-1280
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R21GM100207     (BUCKEE, CAROLINE O'FLAHERTY)Feb 1, 2013 - Jan 31, 2015
NIH/NIGMS
An alignment free network approach to analyzing highly recombinant malaria parasi
Role: Principal Investigator

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Molodecky NA, Blake IM, O'Reilly KM, Wadood MZ, Safdar RM, Wesolowski A, Buckee CO, Bandyopadhyay AS, Okayasu H, Grassly NC. Risk factors and short-term projections for serotype-1 poliomyelitis incidence in Pakistan: A spatiotemporal analysis. PLoS Med. 2017 Jun; 14(6):e1002323. PMID: 28604777.
    View in: PubMed
  2. Peak CM, Childs LM, Grad YH, Buckee CO. Comparing nonpharmaceutical interventions for containing emerging epidemics. Proc Natl Acad Sci U S A. 2017 Apr 11; 114(15):4023-4028. PMID: 28351976.
    View in: PubMed
  3. Chang HH, Worby CJ, Yeka A, Nankabirwa J, Kamya MR, Staedke SG, Dorsey G, Murphy M, Neafsey DE, Jeffreys AE, Hubbart C, Rockett KA, Amato R, Kwiatkowski DP, Buckee CO, Greenhouse B. THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites. PLoS Comput Biol. 2017 Jan; 13(1):e1005348. PMID: 28125584.
    View in: PubMed
  4. Childs LM, Cai FY, Kakani EG, Mitchell SN, Paton D, Gabrieli P, Buckee CO, Catteruccia F. Disrupting Mosquito Reproduction and Parasite Development for Malaria Control. PLoS Pathog. 2016 Dec; 12(12):e1006060. PMID: 27977810.
    View in: PubMed
  5. Buckee CO, Tatem AJ, Metcalf CJ. Seasonal Population Movements and the Surveillance and Control of Infectious Diseases. Trends Parasitol. 2017 Jan; 33(1):10-20. PMID: 27865741.
    View in: PubMed
  6. Shaw WR, Marcenac P, Childs LM, Buckee CO, Baldini F, Sawadogo SP, Dabiré RK, Diabaté A, Catteruccia F. Wolbachia infections in natural Anopheles populations affect egg laying and negatively correlate with Plasmodium development. Nat Commun. 2016 May 31; 7:11772. PMID: 27243367; PMCID: PMC4895022.
  7. Chang HH, Meibalan E, Zelin J, Daniels R, Eziefula AC, Meyer EC, Tadesse F, Grignard L, Joice RC, Drakeley C, Wirth DF, Volkman SK, Buckee C, Bousema T, Marti M. Persistence of Plasmodium falciparum parasitemia after artemisinin combination therapy: evidence from a randomized trial in Uganda. Sci Rep. 2016 May 20; 6:26330. PMID: 27197604; PMCID: PMC4873826.
  8. Chang HH, Childs LM, Buckee CO. Variation in infection length and superinfection enhance selection efficiency in the human malaria parasite. Sci Rep. 2016 May 19; 6:26370. PMID: 27193195; PMCID: PMC4872237.
  9. Wesolowski A, Mensah K, Brook CE, Andrianjafimasy M, Winter A, Buckee CO, Razafindratsimandresy R, Tatem AJ, Heraud JM, Metcalf CJ. Introduction of rubella-containing-vaccine to Madagascar: implications for roll-out and local elimination. J R Soc Interface. 2016 Apr; 13(117). PMID: 27122178; PMCID: PMC4874430.
  10. Wilson R, Zu Erbach-Schoenberg E, Albert M, Power D, Tudge S, Gonzalez M, Guthrie S, Chamberlain H, Brooks C, Hughes C, Pitonakova L, Buckee C, Lu X, Wetter E, Tatem A, Bengtsson L. Rapid and Near Real-Time Assessments of Population Displacement Using Mobile Phone Data Following Disasters: The 2015 Nepal Earthquake. PLoS Curr. 2016 Feb 24; 8. PMID: 26981327; PMCID: PMC4779046.
  11. Obaldía N, Dow GS, Gerena L, Kyle D, Otero W, Mantel PY, Baro N, Daniels R, Mukherjee A, Childs LM, Buckee C, Duraisingh MT, Volkman SK, Wirth DF, Marti M. Altered drug susceptibility during host adaptation of a Plasmodium falciparum strain in a non-human primate model. Sci Rep. 2016 Feb 16; 6:21216. PMID: 26880111; PMCID: PMC4754742.
  12. Larremore DB, Sundararaman SA, Liu W, Proto WR, Clauset A, Loy DE, Speede S, Plenderleith LJ, Sharp PM, Hahn BH, Rayner JC, Buckee CO. Ape parasite origins of human malaria virulence genes. Nat Commun. 2015 Oct 12; 6:8368. PMID: 26456841; PMCID: PMC4633637.
  13. Wesolowski A, Qureshi T, Boni MF, Sundsøy PR, Johansson MA, Rasheed SB, Engø-Monsen K, Buckee CO. Impact of human mobility on the emergence of dengue epidemics in Pakistan. Proc Natl Acad Sci U S A. 2015 Sep 22; 112(38):11887-92. PMID: 26351662; PMCID: PMC4586847.
  14. Wesolowski A, Metcalf CJ, Eagle N, Kombich J, Grenfell BT, Bjørnstad ON, Lessler J, Tatem AJ, Buckee CO. Quantifying seasonal population fluxes driving rubella transmission dynamics using mobile phone data. Proc Natl Acad Sci U S A. 2015 Sep 01; 112(35):11114-9. PMID: 26283349; PMCID: PMC4568255.
  15. Watkins ER, Penman BS, Lourenço J, Buckee CO, Maiden MC, Gupta S. Vaccination Drives Changes in Metabolic and Virulence Profiles of Streptococcus pneumoniae. PLoS Pathog. 2015 Jul; 11(7):e1005034. PMID: 26181911; PMCID: PMC4504489.
  16. Wesolowski A, O'Meara WP, Eagle N, Tatem AJ, Buckee CO. Evaluating Spatial Interaction Models for Regional Mobility in Sub-Saharan Africa. PLoS Comput Biol. 2015 Jul; 11(7):e1004267. PMID: 26158274; PMCID: PMC4497594.
  17. Nilsson SK, Childs LM, Buckee C, Marti M. Targeting Human Transmission Biology for Malaria Elimination. PLoS Pathog. 2015 Jun; 11(6):e1004871. PMID: 26086192; PMCID: PMC4472755.
  18. Childs LM, Buckee CO. Dissecting the determinants of malaria chronicity: why within-host models struggle to reproduce infection dynamics. J R Soc Interface. 2015 Mar 06; 12(104):20141379. PMID: 25673299; PMCID: PMC4345506.
  19. Wesolowski A, O'Meara WP, Tatem AJ, Ndege S, Eagle N, Buckee CO. Quantifying the impact of accessibility on preventive healthcare in sub-Saharan Africa using mobile phone data. Epidemiology. 2015 Mar; 26(2):223-8. PMID: 25643101; PMCID: PMC4323566.
  20. Childs LM, Abuelezam NN, Dye C, Gupta S, Murray MB, Williams BG, Buckee CO. Modelling challenges in context: lessons from malaria, HIV, and tuberculosis. Epidemics. 2015 Mar; 10:102-7. PMID: 25843394; PMCID: PMC4451070.
  21. Peak CM, Thuan PD, Britton A, Nguyen TD, Wolbers M, Thanh NV, Buckee CO, Boni MF. Measuring the association between artemisinin-based case management and malaria incidence in southern Vietnam, 1991-2010. Am J Trop Med Hyg. 2015 Apr; 92(4):811-7. PMID: 25667053; PMCID: PMC4385779.
  22. Bei AK, Diouf A, Miura K, Larremore DB, Ribacke U, Tullo G, Moss EL, Neafsey DE, Daniels RF, Zeituni AE, Nosamiefan I, Volkman SK, Ahouidi AD, Ndiaye D, Dieye T, Mboup S, Buckee CO, Long CA, Wirth DF. Immune characterization of Plasmodium falciparum parasites with a shared genetic signature in a region of decreasing transmission. Infect Immun. 2015 Jan; 83(1):276-85. PMID: 25368109; PMCID: PMC4288878.
  23. Watkins ER, Grad YH, Gupta S, Buckee CO. Contrasting within- and between-host immune selection shapes Neisseria Opa repertoires. Sci Rep. 2014 Oct 09; 4:6554. PMID: 25296566; PMCID: PMC4894414.
  24. Buckee CO. Society: Protect privacy of mobile data. Nature. 2014 Oct 02; 514(7520):35. PMID: 25279910.
    View in: PubMed
  25. Wesolowski A, Buckee CO, Bengtsson L, Wetter E, Lu X, Tatem AJ. Commentary: containing the ebola outbreak - the potential and challenge of mobile network data. PLoS Curr. 2014 Sep 29; 6. PMID: 25642369; PMCID: PMC4205120.
  26. Coleman BI, Skillman KM, Jiang RH, Childs LM, Altenhofen LM, Ganter M, Leung Y, Goldowitz I, Kafsack BF, Marti M, Llinás M, Buckee CO, Duraisingh MT. A Plasmodium falciparum histone deacetylase regulates antigenic variation and gametocyte conversion. Cell Host Microbe. 2014 Aug 13; 16(2):177-86. PMID: 25121747; PMCID: PMC4188636.
  27. Wesolowski A, Stresman G, Eagle N, Stevenson J, Owaga C, Marube E, Bousema T, Drakeley C, Cox J, Buckee CO. Quantifying travel behavior for infectious disease research: a comparison of data from surveys and mobile phones. Sci Rep. 2014 Jul 14; 4:5678. PMID: 25022440; PMCID: PMC4894426.
  28. Smith DL, Perkins TA, Reiner RC, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, Gething PW, Hartley DM, Johnston G, Klein EY, Michael E, Lloyd AL, Pigott DM, Reisen WK, Ruktanonchai N, Singh BK, Stoller J, Tatem AJ, Kitron U, Godfray HC, Cohen JM, Hay SI, Scott TW. Recasting the theory of mosquito-borne pathogen transmission dynamics and control. Trans R Soc Trop Med Hyg. 2014 Apr; 108(4):185-97. PMID: 24591453; PMCID: PMC3952634.
  29. Penman BS, Ashby B, Buckee CO, Gupta S. Pathogen selection drives nonoverlapping associations between HLA loci. Proc Natl Acad Sci U S A. 2013 Nov 26; 110(48):19645-50. PMID: 24225852; PMCID: PMC3845180.
  30. Larremore DB, Clauset A, Buckee CO. A network approach to analyzing highly recombinant malaria parasite genes. PLoS Comput Biol. 2013; 9(10):e1003268. PMID: 24130474; PMCID: PMC3794903.
  31. Warimwe GM, Recker M, Kiragu EW, Buckee CO, Wambua J, Musyoki JN, Marsh K, Bull PC. Plasmodium falciparum var gene expression homogeneity as a marker of the host-parasite relationship under different levels of naturally acquired immunity to malaria. PLoS One. 2013; 8(7):e70467. PMID: 23922996; PMCID: PMC3726600.
  32. Smith DL, Cohen JM, Chiyaka C, Johnston G, Gething PW, Gosling R, Buckee CO, Laxminarayan R, Hay SI, Tatem AJ. A sticky situation: the unexpected stability of malaria elimination. Philos Trans R Soc Lond B Biol Sci. 2013 Aug 05; 368(1623):20120145. PMID: 23798693; PMCID: PMC3720043.
  33. Hansen E, Buckee CO. Modeling the human infectious reservoir for malaria control: does heterogeneity matter? Trends Parasitol. 2013 Jun; 29(6):270-5. PMID: 23597499; PMCID: PMC3665612.
  34. Buckee CO, Wesolowski A, Eagle NN, Hansen E, Snow RW. Mobile phones and malaria: modeling human and parasite travel. Travel Med Infect Dis. 2013 Jan-Feb; 11(1):15-22. PMID: 23478045; PMCID: PMC3697114.
  35. Reiner RC, Perkins TA, Barker CM, Niu T, Chaves LF, Ellis AM, George DB, Le Menach A, Pulliam JR, Bisanzio D, Buckee C, Chiyaka C, Cummings DA, Garcia AJ, Gatton ML, Gething PW, Hartley DM, Johnston G, Klein EY, Michael E, Lindsay SW, Lloyd AL, Pigott DM, Reisen WK, Ruktanonchai N, Singh BK, Tatem AJ, Kitron U, Hay SI, Scott TW, Smith DL. A systematic review of mathematical models of mosquito-borne pathogen transmission: 1970-2010. J R Soc Interface. 2013 Apr 06; 10(81):20120921. PMID: 23407571; PMCID: PMC3627099.
  36. Wesolowski A, Eagle N, Noor AM, Snow RW, Buckee CO. The impact of biases in mobile phone ownership on estimates of human mobility. J R Soc Interface. 2013 Apr 06; 10(81):20120986. PMID: 23389897; PMCID: PMC3627108.
  37. Wesolowski A, Buckee CO, Pindolia DK, Eagle N, Smith DL, Garcia AJ, Tatem AJ. The use of census migration data to approximate human movement patterns across temporal scales. PLoS One. 2013; 8(1):e52971. PMID: 23326367; PMCID: PMC3541275.
  38. Lim C, Hansen E, DeSimone TM, Moreno Y, Junker K, Bei A, Brugnara C, Buckee CO, Duraisingh MT. Expansion of host cellular niche can drive adaptation of a zoonotic malaria parasite to humans. Nat Commun. 2013; 4:1638. PMID: 23535659; PMCID: PMC3762474.
  39. Wesolowski A, Eagle N, Tatem AJ, Smith DL, Noor AM, Snow RW, Buckee CO. Quantifying the impact of human mobility on malaria. Science. 2012 Oct 12; 338(6104):267-70. PMID: 23066082; PMCID: PMC3675794.
  40. Salathé M, Bengtsson L, Bodnar TJ, Brewer DD, Brownstein JS, Buckee C, Campbell EM, Cattuto C, Khandelwal S, Mabry PL, Vespignani A. Digital epidemiology. PLoS Comput Biol. 2012; 8(7):e1002616. PMID: 22844241; PMCID: PMC3406005.
  41. Pindolia DK, Garcia AJ, Wesolowski A, Smith DL, Buckee CO, Noor AM, Snow RW, Tatem AJ. Human movement data for malaria control and elimination strategic planning. Malar J. 2012 Jun 18; 11:205. PMID: 22703541; PMCID: PMC3464668.
  42. Penman BS, Gupta S, Buckee CO. The emergence and maintenance of sickle cell hotspots in the Mediterranean. Infect Genet Evol. 2012 Oct; 12(7):1543-50. PMID: 22704979; PMCID: PMC3438445.
  43. Wesolowski A, Eagle N, Noor AM, Snow RW, Buckee CO. Heterogeneous mobile phone ownership and usage patterns in Kenya. PLoS One. 2012; 7(4):e35319. PMID: 22558140; PMCID: PMC3338828.
  44. Buckee CO, Recker M. Evolution of the multi-domain structures of virulence genes in the human malaria parasite, Plasmodium falciparum. PLoS Comput Biol. 2012; 8(4):e1002451. PMID: 22511852; PMCID: PMC3325180.
  45. Merrick CJ, Huttenhower C, Buckee C, Amambua-Ngwa A, Gomez-Escobar N, Walther M, Conway DJ, Duraisingh MT. Epigenetic dysregulation of virulence gene expression in severe Plasmodium falciparum malaria. J Infect Dis. 2012 May 15; 205(10):1593-600. PMID: 22448008; PMCID: PMC3415821.
  46. Buckee CO, Recker M, Watkins ER, Gupta S. Role of stochastic processes in maintaining discrete strain structure in antigenically diverse pathogen populations. Proc Natl Acad Sci U S A. 2011 Sep 13; 108(37):15504-9. PMID: 21876129; PMCID: PMC3174581.
  47. Recker M, Buckee CO, Serazin A, Kyes S, Pinches R, Christodoulou Z, Springer AL, Gupta S, Newbold CI. Antigenic variation in Plasmodium falciparum malaria involves a highly structured switching pattern. PLoS Pathog. 2011 Mar; 7(3):e1001306. PMID: 21408201; PMCID: PMC3048365.
  48. Schultz L, Wapling J, Mueller I, Ntsuke PO, Senn N, Nale J, Kiniboro B, Buckee CO, Tavul L, Siba PM, Reeder JC, Barry AE. Multilocus haplotypes reveal variable levels of diversity and population structure of Plasmodium falciparum in Papua New Guinea, a region of intense perennial transmission. Malar J. 2010 Nov 23; 9:336. PMID: 21092231; PMCID: PMC3002378.
  49. Penman B, Buckee C, Gupta S, Nee S. Genome-wide association studies in Plasmodium species. BMC Biol. 2010 Jul 13; 8:90. PMID: 20646263; PMCID: PMC2903549.
  50. Buckee CO, Gupta S, Kriz P, Maiden MC, Jolley KA. Long-term evolution of antigen repertoires among carried meningococci. Proc Biol Sci. 2010 Jun 07; 277(1688):1635-41. PMID: 20129981; PMCID: PMC2871849.
  51. Buckee CO, Gupta S. Modelling malaria population structure and its implications for control. Adv Exp Med Biol. 2010; 673:112-26. PMID: 20632533.
    View in: PubMed
  52. Barry AE, Schultz L, Buckee CO, Reeder JC. Contrasting population structures of the genes encoding ten leading vaccine-candidate antigens of the human malaria parasite, Plasmodium falciparum. PLoS One. 2009 Dec 30; 4(12):e8497. PMID: 20041125; PMCID: PMC2795866.
  53. Buckee CO, Bull PC, Gupta S. Inferring malaria parasite population structure from serological networks. Proc Biol Sci. 2009 Feb 07; 276(1656):477-85. PMID: 18826933.
    View in: PubMed
  54. Boni MF, Buckee CO, White NJ. Mathematical models for a new era of malaria eradication. PLoS Med. 2008 Nov 25; 5(11):e231. PMID: 19067482; PMCID: PMC2586351.
  55. Buckee CO, Jolley KA, Recker M, Penman B, Kriz P, Gupta S, Maiden MC. Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis. Proc Natl Acad Sci U S A. 2008 Sep 30; 105(39):15082-7. PMID: 18815379; PMCID: PMC2553036.
  56. Callaghan MJ, Buckee C, McCarthy ND, Ibarz Pavón AB, Jolley KA, Faust S, Gray SJ, Kaczmarski EB, Levin M, Kroll JS, Maiden MC, Pollard AJ. Opa protein repertoires of disease-causing and carried meningococci. J Clin Microbiol. 2008 Sep; 46(9):3033-41. PMID: 18508936; PMCID: PMC2546767.
  57. Bull PC, Buckee CO, Kyes S, Kortok MM, Thathy V, Guyah B, Stoute JA, Newbold CI, Marsh K. Plasmodium falciparum antigenic variation. Mapping mosaic var gene sequences onto a network of shared, highly polymorphic sequence blocks. Mol Microbiol. 2008 Jun; 68(6):1519-34. PMID: 18433451; PMCID: PMC2440560.
  58. Callaghan MJ, Buckee CO, Jolley KA, Kriz P, Maiden MC, Gupta S. The effect of immune selection on the structure of the meningococcal opa protein repertoire. PLoS Pathog. 2008 Mar 14; 4(3):e1000020. PMID: 18369470; PMCID: PMC2265424.
  59. Recker M, Arinaminpathy N, Buckee CO. The effects of a partitioned var gene repertoire of Plasmodium falciparum on antigenic diversity and the acquisition of clinical immunity. Malar J. 2008 Jan 23; 7:18. PMID: 18215289; PMCID: PMC2265724.
  60. Stone GN, Atkinson RJ, Rokas A, Aldrey JL, Melika G, Acs Z, Csóka G, Hayward A, Bailey R, Buckee C, McVean GA. Evidence for widespread cryptic sexual generations in apparently purely asexual Andricus gallwasps. Mol Ecol. 2008 Jan; 17(2):652-65. PMID: 18086197.
    View in: PubMed
  61. Buckee C, Danon L, Gupta S. Host community structure and the maintenance of pathogen diversity. Proc Biol Sci. 2007 Jul 22; 274(1619):1715-21. PMID: 17504739; PMCID: PMC2493584.
  62. Bull PC, Kyes S, Buckee CO, Montgomery J, Kortok MM, Newbold CI, Marsh K. An approach to classifying sequence tags sampled from Plasmodium falciparum var genes. Mol Biochem Parasitol. 2007 Jul; 154(1):98-102. PMID: 17467073; PMCID: PMC1906845.
  63. Imoukhuede EB, Andrews L, Milligan P, Berthoud T, Bojang K, Nwakanma D, Ismaili J, Buckee C, Njie F, Keita S, Sowe M, Lang T, Gilbert SC, Greenwood BM, Hill AV. Low-level malaria infections detected by a sensitive polymerase chain reaction assay and use of this technique in the evaluation of malaria vaccines in an endemic area. Am J Trop Med Hyg. 2007 Mar; 76(3):486-93. PMID: 17360872; PMCID: PMC3836239.
  64. Buckee CO, Koelle K, Mustard MJ, Gupta S. The effects of host contact network structure on pathogen diversity and strain structure. Proc Natl Acad Sci U S A. 2004 Jul 20; 101(29):10839-44. PMID: 15247422; PMCID: PMC490021.
  65. Hall N, Pain A, Berriman M, Churcher C, Harris B, Harris D, Mungall K, Bowman S, Atkin R, Baker S, Barron A, Brooks K, Buckee CO, Burrows C, Cherevach I, Chillingworth C, Chillingworth T, Christodoulou Z, Clark L, Clark R, Corton C, Cronin A, Davies R, Davis P, Dear P, Dearden F, Doggett J, Feltwell T, Goble A, Goodhead I, Gwilliam R, Hamlin N, Hance Z, Harper D, Hauser H, Hornsby T, Holroyd S, Horrocks P, Humphray S, Jagels K, James KD, Johnson D, Kerhornou A, Knights A, Konfortov B, Kyes S, Larke N, Lawson D, Lennard N, Line A, Maddison M, McLean J, Mooney P, Moule S, Murphy L, Oliver K, Ormond D, Price C, Quail MA, Rabbinowitsch E, Rajandream MA, Rutter S, Rutherford KM, Sanders M, Simmonds M, Seeger K, Sharp S, Smith R, Squares R, Squares S, Stevens K, Taylor K, Tivey A, Unwin L, Whitehead S, Woodward J, Sulston JE, Craig A, Newbold C, Barrell BG. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Nature. 2002 Oct 03; 419(6906):527-31. PMID: 12368867.
    View in: PubMed
  66. Morgan K, Buckee C, Ayad S, Clague RB, Holt PJ. Diversity of the immune response to bovine type II and XI collagens in rats. Clin Exp Rheumatol. 1991 Jan-Feb; 9(1):3-10. PMID: 1711425.
    View in: PubMed
  67. Buckee C, Morgan K, Ayad S, Collins I, Clague RB, Holt PJ. Diversity of antibodies to type II collagen in patients with rheumatoid arthritis: detection by binding to alpha-chains and to cyanogen bromide peptides. Br J Rheumatol. 1990 Aug; 29(4):254-8. PMID: 2379041.
    View in: PubMed
  68. Morgan K, Buckee C, Collins I, Ayad S, Clague RB, Holt PJ. Antibodies to type II and XI collagens: evidence for the formation of antigen specific as well as cross reacting antibodies in patients with rheumatoid arthritis. Ann Rheum Dis. 1988 Dec; 47(12):1008-13. PMID: 3207381; PMCID: PMC1003656.
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