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Yuichi Nishi, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Ohmi S, Ono M, Takata H, Hirano S, Funakoshi S, Nishi Y, Yoshimura K, Amano E, Terada Y, Saibara T, Fujimoto S. Analysis of factors influencing glucose tolerance in Japanese patients with non-alcoholic fatty liver disease. Diabetol Metab Syndr. 2017; 9:65. PMID: 28878826.
    Citations:    
  2. Yoshimura K, Hirano S, Takata H, Funakoshi S, Ohmi S, Amano E, Nishi Y, Inoue M, Fukuda Y, Hayashi H, Taguchi T, Yamada S, Miwa I, Terada Y, Fujimoto S. Plasma mannose level, a putative indicator of glycogenolysis, and glucose tolerance in Japanese individuals. J Diabetes Investig. 2017 Jul; 8(4):489-495. PMID: 28084015.
    Citations:    Fields:    Translation:HumansCells
  3. Lorberbaum DS, Ramos AI, Peterson KA, Carpenter BS, Parker DS, De S, Hillers LE, Blake VM, Nishi Y, McFarlane MR, Chiang AC, Kassis JA, Allen BL, McMahon AP, Barolo S. An ancient yet flexible cis-regulatory architecture allows localized Hedgehog tuning by patched/Ptch1. Elife. 2016 05 05; 5. PMID: 27146892.
    Citations: 6     Fields:    Translation:AnimalsCells
  4. Nishi Y, Zhang X, Jeong J, Peterson KA, Vedenko A, Bulyk ML, Hide WA, McMahon AP. A direct fate exclusion mechanism by Sonic hedgehog-regulated transcriptional repressors. Development. 2015 Oct 01; 142(19):3286-93. PMID: 26293298.
    Citations: 15     Fields:    Translation:HumansCells
  5. Junker JP, Peterson KA, Nishi Y, Mao J, McMahon AP, van Oudenaarden A. A predictive model of bifunctional transcription factor signaling during embryonic tissue patterning. Dev Cell. 2014 Nov 24; 31(4):448-60. PMID: 25458012.
    Citations: 6     Fields:    Translation:AnimalsCells
  6. Spike CA, Coetzee D, Nishi Y, Guven-Ozkan T, Oldenbroek M, Yamamoto I, Lin R, Greenstein D. Translational control of the oogenic program by components of OMA ribonucleoprotein particles in Caenorhabditis elegans. Genetics. 2014 Dec; 198(4):1513-33. PMID: 25261697.
    Citations: 13     Fields:    Translation:AnimalsCells
  7. Holtz AM, Peterson KA, Nishi Y, Morin S, Song JY, Charron F, McMahon AP, Allen BL. Essential role for ligand-dependent feedback antagonism of vertebrate hedgehog signaling by PTCH1, PTCH2 and HHIP1 during neural patterning. Development. 2013 Aug; 140(16):3423-34. PMID: 23900540.
    Citations: 21     Fields:    Translation:AnimalsCells
  8. Sasaki M, Fujimoto S, Sato Y, Nishi Y, Mukai E, Yamano G, Sato H, Tahara Y, Ogura K, Nagashima K, Inagaki N. Reduction of reactive oxygen species ameliorates metabolism-secretion coupling in islets of diabetic GK rats by suppressing lactate overproduction. Diabetes. 2013 Jun; 62(6):1996-2003. PMID: 23349483.
    Citations: 6     Fields:    Translation:AnimalsCells
  9. Harashima S, Fukushima T, Sasaki M, Nishi Y, Fujimoto S, Ogura M, Yamane S, Tanaka D, Harada N, Hamasaki A, Nagashima K, Nakahigashi Y, Seino Y, Inagaki N. Self-monitoring of blood glucose (SMBG) improves glycaemic control in oral hypoglycaemic agent (OHA)-treated type 2 diabetes (SMBG-OHA study). Diabetes Metab Res Rev. 2013 Jan; 29(1):77-84. PMID: 23008090.
    Citations: 4     Fields:    Translation:Humans
  10. Peterson KA, Nishi Y, Ma W, Vedenko A, Shokri L, Zhang X, McFarlane M, Baizabal JM, Junker JP, van Oudenaarden A, Mikkelsen T, Bernstein BE, Bailey TL, Bulyk ML, Wong WH, McMahon AP. Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning. Genes Dev. 2012 Dec 15; 26(24):2802-16. PMID: 23249739.
    Citations: 52     Fields:    Translation:AnimalsCells
  11. Morishima K, Nakatani K, Nishi Y, Doi A, Yamama Y, Nakanishi M, Yagi M, Kurita S, Nagata N. [Anesthetic management of a patient with thrombocytopenia induced by methotrexate undergoing emergent clipping surgery]. Masui. 2012 Oct; 61(10):1102-4. PMID: 23157096.
    Citations: 1     Fields:    Translation:HumansPHPublic Health
  12. Tsanov KM, Nishi Y, Peterson KA, Liu J, Baetscher M, McMahon AP. An embryonic stem cell-based system for rapid analysis of transcriptional enhancers. Genesis. 2012 May; 50(5):443-50. PMID: 22083581.
    Citations: 3     Fields:    Translation:HumansCells
  13. Oldenbroek M, Robertson SM, Guven-Ozkan T, Gore S, Nishi Y, Lin R. Multiple RNA-binding proteins function combinatorially to control the soma-restricted expression pattern of the E3 ligase subunit ZIF-1. Dev Biol. 2012 Mar 15; 363(2):388-98. PMID: 22265679.
    Citations: 4     Fields:    Translation:AnimalsCells
  14. Nishi Y, Fujimoto S, Sasaki M, Mukai E, Sato H, Sato Y, Tahara Y, Nakamura Y, Inagaki N. Role of mitochondrial phosphate carrier in metabolism-secretion coupling in rat insulinoma cell line INS-1. Biochem J. 2011 Apr 15; 435(2):421-30. PMID: 21265734.
    Citations: 9     Fields:    Translation:AnimalsCells
  15. Nishi Y, Nakatani K, Tanada K, Doi A, Beppu Y, Yagi M, Koyama S, Kurita S, Nagata N. [Anesthetic management of a hemodialysis-dependent patient implanted with a CRT-D device undergoing an operation for perforated peritonitis]. Masui. 2011 Feb; 60(2):192-4. PMID: 21384654.
    Citations:    Fields:    Translation:HumansPHPublic Health
  16. Nishi H, Nishi Y, Yagita M, Tamaru Y, Matsumoto S, Koshiyama H. A Case of Transient ACTH Deficiency Associated with Polymyalgia Rheumatica. Jpn Clin Med. 2010; 1:25-7. PMID: 23946678.
    Citations:    
  17. Amadi OC, Steinhauser ML, Nishi Y, Chung S, Kamm RD, McMahon AP, Lee RT. A low resistance microfluidic system for the creation of stable concentration gradients in a defined 3D microenvironment. Biomed Microdevices. 2010 Dec; 12(6):1027-41. PMID: 20661647.
    Citations: 9     Fields:    Translation:HumansAnimalsCells
  18. Mukai E, Fujimoto S, Sato H, Oneyama C, Kominato R, Sato Y, Sasaki M, Nishi Y, Okada M, Inagaki N. Exendin-4 suppresses SRC activation and reactive oxygen species production in diabetic Goto-Kakizaki rat islets in an Epac-dependent manner. Diabetes. 2011 Jan; 60(1):218-26. PMID: 20978090.
    Citations: 27     Fields:    Translation:AnimalsCells
  19. Guven-Ozkan T, Robertson SM, Nishi Y, Lin R. zif-1 translational repression defines a second, mutually exclusive OMA function in germline transcriptional repression. Development. 2010 Oct; 137(20):3373-82. PMID: 20826530.
    Citations: 16     Fields:    Translation:AnimalsCells
  20. Shimodahira M, Fujimoto S, Mukai E, Nakamura Y, Nishi Y, Sasaki M, Sato Y, Sato H, Hosokawa M, Nagashima K, Seino Y, Inagaki N. Rapamycin impairs metabolism-secretion coupling in rat pancreatic islets by suppressing carbohydrate metabolism. J Endocrinol. 2010 Jan; 204(1):37-46. PMID: 19812126.
    Citations: 13     Fields:    Translation:AnimalsCells
  21. Nishi Y, Ji H, Wong WH, McMahon AP, Vokes SA. Modeling the spatio-temporal network that drives patterning in the vertebrate central nervous system. Biochim Biophys Acta. 2009 Apr; 1789(4):299-305. PMID: 19445894.
    Citations: 7     Fields:    Translation:Animals
  22. Guven-Ozkan T, Nishi Y, Robertson SM, Lin R. Global transcriptional repression in C. elegans germline precursors by regulated sequestration of TAF-4. Cell. 2008 Oct 03; 135(1):149-60. PMID: 18854162.
    Citations: 35     Fields:    Translation:AnimalsCells
  23. Fujiwara H, Hosokawa M, Zhou X, Fujimoto S, Fukuda K, Toyoda K, Nishi Y, Fujita Y, Yamada K, Yamada Y, Seino Y, Inagaki N. Curcumin inhibits glucose production in isolated mice hepatocytes. Diabetes Res Clin Pract. 2008 May; 80(2):185-91. PMID: 18221818.
    Citations: 11     Fields:    Translation:AnimalsCells
  24. Nishi Y, Rogers E, Robertson SM, Lin R. Polo kinases regulate C. elegans embryonic polarity via binding to DYRK2-primed MEX-5 and MEX-6. Development. 2008 Feb; 135(4):687-97. PMID: 18199581.
    Citations: 22     Fields:    Translation:AnimalsCells
  25. Nabe K, Fujimoto S, Shimodahira M, Kominato R, Nishi Y, Funakoshi S, Mukai E, Yamada Y, Seino Y, Inagaki N. Diphenylhydantoin suppresses glucose-induced insulin release by decreasing cytoplasmic H+ concentration in pancreatic islets. Endocrinology. 2006 Jun; 147(6):2717-27. PMID: 16527842.
    Citations: 2     Fields:    Translation:Animals
  26. Mitsui R, Fukushima M, Nishi Y, Ueda N, Suzuki H, Taniguchi A, Nakai Y, Kawakita T, Kurose T, Yamada Y, Inagaki N, Seino Y. Factors responsible for deteriorating glucose tolerance in newly diagnosed type 2 diabetes in Japanese men. Metabolism. 2006 Jan; 55(1):53-8. PMID: 16324919.
    Citations: 11     Fields:    Translation:HumansCTClinical Trials
  27. Nishi Y, Lin R. DYRK2 and GSK-3 phosphorylate and promote the timely degradation of OMA-1, a key regulator of the oocyte-to-embryo transition in C. elegans. Dev Biol. 2005 Dec 01; 288(1):139-49. PMID: 16289132.
    Citations: 35     Fields:    Translation:AnimalsCells
  28. Nishi Y, Fukushima M, Suzuki H, Mitsui R, Ueda N, Taniguchi A, Nakai Y, Kawakita T, Kurose T, Seino Y, Yamada Y. Insulin secretion and insulin sensitivity in Japanese subjects with impaired fasting glucose and isolated fasting hyperglycemia. Diabetes Res Clin Pract. 2005 Oct; 70(1):46-52. PMID: 16126123.
    Citations: 8     Fields:    Translation:Humans
  29. Shimono D, Fujimoto S, Mukai E, Takehiro M, Nabe K, Radu RG, Shimodahira M, Kominato R, Aramaki Y, Nishi Y, Funakoshi S, Yamada Y, Seino Y. ATP enhances exocytosis of insulin secretory granules in pancreatic islets under Ca2+-depleted condition. Diabetes Res Clin Pract. 2005 Sep; 69(3):216-23. PMID: 16098917.
    Citations: 3     Fields:    Translation:Animals
  30. Nishi Y, Yamada Y, Fukushima M, Seino Y. [Insulin secretion and insulin sensitivity in subjects with impaired fasting glucose]. Nihon Rinsho. 2005 Feb; 63 Suppl 2:151-4. PMID: 15779360.
    Citations:    Fields:    Translation:Humans
  31. Radu RG, Fujimoto S, Mukai E, Takehiro M, Shimono D, Nabe K, Shimodahira M, Kominato R, Aramaki Y, Nishi Y, Funakoshi S, Yamada Y, Seino Y. Tacrolimus suppresses glucose-induced insulin release from pancreatic islets by reducing glucokinase activity. Am J Physiol Endocrinol Metab. 2005 Feb; 288(2):E365-71. PMID: 15479952.
    Citations: 15     Fields:    Translation:AnimalsCells
  32. Nishi Y, Koshiyama H, Honjo S, Seino Y. Poor correlation of pulse-wave velocity and intima-media thickness in diabetic subjects. Diabetes Care. 2004 Aug; 27(8):2084. PMID: 15277446.
    Citations: 1     Fields:    Translation:Humans
  33. Nagata M, Kusiya M, Sugita S, Houya I, Kimura I, Nishi Y, Sakata K, Sakamoto Y. [Clinical evaluation of continuous isoproterenol inhalation in adult patients with severe acute asthma]. Nihon Kokyuki Gakkai Zasshi. 2003 Sep; 41(9):631-5. PMID: 14531297.
    Citations:    Fields:    Translation:Humans
  34. Sakata N, Shibasaki M, Shimono N, Nishi Y, Sakamoto Y. [Influence of clarithromycin and azithromycin on cell cycle of neoplasms]. Jpn J Antibiot. 2003 Apr; 56 Suppl A:32-6. PMID: 14679743.
    Citations:    Fields:    Translation:HumansCells
  35. Park HY, Nishi Y, Tabe K, Yamamoto H, Shibasaki M, Sakata K, Nagata M, Kuramitu K, Nakamura S, Morita R, Kaneko K, Shimizu Y, Sakamoto Y. [Minute pulmonary meningothelial-like nodules: a case report]. Nihon Kokyuki Gakkai Zasshi. 2002 Jun; 40(6):499-502. PMID: 12325336.
    Citations: 1     Fields:    Translation:Humans
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.