Harvard Catalyst Profiles

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Yogesh Rathi, PH.D.

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Other Positions
Title
Institution
Department

Biography
1992 - 1997
BITS Institute Fellowship
1996
Motorola Best Student Thesis Award
2007
O. Hugo Schuk Best Paper Award

Research
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. R01MH119222 (RATHI, YOGESH) Apr 1, 2019 - Jan 31, 2024
    NIH/NIMH
    Harmonizing multi-site diffusion MRI acquisitions for neuroscientific analysis across ages and brain disorders
    Role: Principal Investigator
  2. R01MH116173 (SETSOMPOP, KAWIN) Mar 1, 2018 - Jan 31, 2023
    NIH/NIMH
    Next generation in-vivo diffusion imaging at submillimeter resolution
    Role: Co-Principal Investigator
  3. R01MH111917 (DOUGHERTY, DARIN D) Sep 19, 2017 - Jun 30, 2020
    NIH/NIMH
    Patient-specific, Effective, and Rational Functional Connectivity Targeting for DBS in OCD
    Role: Co-Principal Investigator
  4. R01MH097979 (RATHI, YOGESH) Sep 18, 2012 - Nov 30, 2017
    NIH/NIMH
    Taking advanced diffusion imaging to the clinic for pediatric patients with ADHD
    Role: Principal Investigator

Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Wu W, McAnulty G, Hamoda HM, Sarill K, Karmacharya S, Gagoski B, Ning L, Grant PE, Shenton ME, Waber DP, Makris N, Rathi Y. Detecting microstructural white matter abnormalities of frontal pathways in children with ADHD using advanced diffusion models. Brain Imaging Behav. 2019 Apr 30. PMID: 31041662.
    Citations:    
  2. Hamoda HM, Makhlouf AT, Fitzsimmons J, Rathi Y, Makris N, Mesholam-Gately RI, Wojcik JD, Goldstein J, McCarley RW, Seidman LJ, Kubicki M, Shenton ME. Abnormalities in thalamo-cortical connections in patients with first-episode schizophrenia: a two-tensor tractography study. Brain Imaging Behav. 2019 Apr; 13(2):472-481. PMID: 29667043.
    Citations:    Fields:    
  3. Kubicki M, Baxi M, Pasternak O, Tang Y, Karmacharya S, Chunga N, Lyall AE, Rathi Y, Eckbo R, Bouix S, Mortazavi F, Papadimitriou G, Shenton ME, Westin CF, Killiany R, Makris N, Rosene DL. Lifespan Trajectories of White Matter Changes in Rhesus Monkeys. Cereb Cortex. 2019 Apr 01; 29(4):1584-1593. PMID: 29701751.
    Citations:    Fields:    
  4. Zhang F, Wu Y, Norton I, Rathi Y, Golby AJ, O'Donnell LJ. Test-retest reproducibility of white matter parcellation using diffusion MRI tractography fiber clustering. Hum Brain Mapp. 2019 Jul; 40(10):3041-3057. PMID: 30875144.
    Citations:    
  5. Dalamagkas K, Tsintou M, Rathi Y, O'Donnell LJ, Pasternak O, Gong X, Zhu A, Savadjiev P, Papadimitriou GM, Kubicki M, Yeterian EH, Makris N. Individual variations of the human corticospinal tract and its hand-related motor fibers using diffusion MRI tractography. Brain Imaging Behav. 2019 Jan 08. PMID: 30617788.
    Citations:    Fields:    
  6. Lyall AE, Rathi Y, Kubicki M, Shenton ME. Diffusion Magnetic Resonance Imaging Advances the Study of Nuclei-Specific Thalamocortical Connectivity in Early Stage Psychosis. Biol Psychiatry. 2019 Jan 01; 85(1):10-12. PMID: 30527208.
    Citations:    Fields:    
  7. Kikinis Z, Makris N, Sydnor VJ, Bouix S, Pasternak O, Coman IL, Antshel KM, Fremont W, Kubicki MR, Shenton ME, Kates WR, Rathi Y. Abnormalities in gray matter microstructure in young adults with 22q11.2 deletion syndrome. Neuroimage Clin. 2019; 21:101611. PMID: 30522971.
    Citations:    
  8. Ning L, Makris N, Camprodon JA, Rathi Y. Limits and reproducibility of resting-state functional MRI definition of DLPFC targets for neuromodulation. Brain Stimul. 2019 Jan - Feb; 12(1):129-138. PMID: 30344110.
    Citations:    Fields:    
  9. Schilling KG, Nath V, Hansen C, Parvathaneni P, Blaber J, Gao Y, Neher P, Aydogan DB, Shi Y, Ocampo-Pineda M, Schiavi S, Daducci A, Girard G, Barakovic M, Rafael-Patino J, Romascano D, Rensonnet G, Pizzolato M, Bates A, Fischi E, Thiran JP, Canales-Rodríguez EJ, Huang C, Zhu H, Zhong L, Cabeen R, Toga AW, Rheault F, Theaud G, Houde JC, Sidhu J, Chamberland M, Westin CF, Dyrby TB, Verma R, Rathi Y, Irfanoglu MO, Thomas C, Pierpaoli C, Descoteaux M, Anderson AW, Landman BA. Limits to anatomical accuracy of diffusion tractography using modern approaches. Neuroimage. 2019 01 15; 185:1-11. PMID: 30317017.
    Citations:    Fields:    
  10. Cetin Karayumak S, Bouix S, Ning L, James A, Crow T, Shenton M, Kubicki M, Rathi Y. Retrospective harmonization of multi-site diffusion MRI data acquired with different acquisition parameters. Neuroimage. 2019 01 01; 184:180-200. PMID: 30205206.
    Citations:    Fields:    
  11. Wu Y, Zhang F, Makris N, Ning Y, Norton I, She S, Peng H, Rathi Y, Feng Y, Wu H, O'Donnell LJ. Investigation into local white matter abnormality in emotional processing and sensorimotor areas using an automatically annotated fiber clustering in major depressive disorder. Neuroimage. 2018 11 01; 181:16-29. PMID: 29890329.
    Citations:    Fields:    Translation:HumansCells
  12. Zhang F, Wu Y, Norton I, Rigolo L, Rathi Y, Makris N, O'Donnell LJ. An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan. Neuroimage. 2018 10 01; 179:429-447. PMID: 29920375.
    Citations:    Fields:    
  13. Hong Y, O'Donnell LJ, Savadjiev P, Zhang F, Wassermann D, Pasternak O, Johnson H, Paulsen J, Vonsattel JP, Makris N, Westin CF, Rathi Y. Genetic load determines atrophy in hand cortico-striatal pathways in presymptomatic Huntington's disease. Hum Brain Mapp. 2018 10; 39(10):3871-3883. PMID: 29797744.
    Citations:    Fields:    
  14. Gong S, Zhang F, Norton I, Essayed WI, Unadkat P, Rigolo L, Pasternak O, Rathi Y, Hou L, Golby AJ, O'Donnell LJ. Free water modeling of peritumoral edema using multi-fiber tractography: Application to tracking the arcuate fasciculus for neurosurgical planning. PLoS One. 2018; 13(5):e0197056. PMID: 29746544.
    Citations:    Fields:    Translation:Humans
  15. Karmacharya S, Gagoski B, Ning L, Vyas R, Cheng HH, Soul J, Newberger JW, Shenton ME, Rathi Y, Grant PE. Advanced diffusion imaging for assessing normal white matter development in neonates and characterizing aberrant development in congenital heart disease. Neuroimage Clin. 2018; 19:360-373. PMID: 30013919.
    Citations:    Fields:    Translation:Humans
  16. Ning L, Nilsson M, Lasic S, Westin CF, Rathi Y. Cumulant expansions for measuring water exchange using diffusion MRI. J Chem Phys. 2018 Feb 21; 148(7):074109. PMID: 29471656.
    Citations:    Fields:    
  17. Lee J, Chon MW, Kim H, Rathi Y, Bouix S, Shenton ME, Kubicki M. Diagnostic value of structural and diffusion imaging measures in schizophrenia. Neuroimage Clin. 2018; 18:467-474. PMID: 29876254.
    Citations:    Fields:    
  18. Mirzaalian H, Ning L, Savadjiev P, Pasternak O, Bouix S, Michailovich O, Karmacharya S, Grant G, Marx CE, Morey RA, Flashman LA, George MS, McAllister TW, Andaluz N, Shutter L, Coimbra R, Zafonte RD, Coleman MJ, Kubicki M, Westin CF, Stein MB, Shenton ME, Rathi Y. Multi-site harmonization of diffusion MRI data in a registration framework. Brain Imaging Behav. 2018 02; 12(1):284-295. PMID: 28176263.
    Citations:    Fields:    Translation:Humans
  19. Saito Y, Kubicki M, Koerte I, Otsuka T, Rathi Y, Pasternak O, Bouix S, Eckbo R, Kikinis Z, von Hohenberg CC, Roppongi T, Del Re E, Asami T, Lee SH, Karmacharya S, Mesholam-Gately RI, Seidman LJ, Levitt J, McCarley RW, Shenton ME, Niznikiewicz MA. Impaired white matter connectivity between regions containing mirror neurons, and relationship to negative symptoms and social cognition, in patients with first-episode schizophrenia. Brain Imaging Behav. 2018 02; 12(1):229-237. PMID: 28247157.
    Citations:    Fields:    Translation:HumansCells
  20. Seitz J, Rathi Y, Lyall A, Pasternak O, Del Re EC, Niznikiewicz M, Nestor P, Seidman LJ, Petryshen TL, Mesholam-Gately RI, Wojcik J, McCarley RW, Shenton ME, Koerte IK, Kubicki M. Alteration of gray matter microstructure in schizophrenia. Brain Imaging Behav. 2018 02; 12(1):54-63. PMID: 28102528.
    Citations:    Fields:    Translation:Humans
  21. Zhang F, Wu W, Ning L, McAnulty G, Waber D, Gagoski B, Sarill K, Hamoda HM, Song Y, Cai W, Rathi Y, O'Donnell LJ. Suprathreshold fiber cluster statistics: Leveraging white matter geometry to enhance tractography statistical analysis. Neuroimage. 2018 05 01; 171:341-354. PMID: 29337279.
    Citations:    Fields:    Translation:Humans
  22. Albi A, Meola A, Zhang F, Kahali P, Rigolo L, Tax CMW, Ciris PA, Essayed WI, Unadkat P, Norton I, Rathi Y, Olubiyi O, Golby AJ, O'Donnell LJ. Image Registration to Compensate for EPI Distortion in Patients with Brain Tumors: An Evaluation of Tract-Specific Effects. J Neuroimaging. 2018 Mar; 28(2):173-182. PMID: 29319208.
    Citations: 1     Fields:    
  23. Norton I, Essayed W, Zhang F, Pujol S, Yarmarkovich A, Golby AJ, Kindlmann G, Wassermann D, Estepar RSJ, Rathi Y, Pieper S, Kikinis R, Johnson HJ, Westin CF, O'Donnell LJ. SlicerDMRI: Open Source Diffusion MRI Software for Brain Cancer Research. Cancer Res. 2017 11 01; 77(21):e101-e103. PMID: 29092950.
    Citations: 2     Fields:    Translation:Humans
  24. Jaimes C, Cheng HH, Soul J, Ferradal S, Rathi Y, Gagoski B, Newburger JW, Grant PE, Zöllei L. Probabilistic tractography-based thalamic parcellation in healthy newborns and newborns with congenital heart disease. J Magn Reson Imaging. 2018 06; 47(6):1626-1637. PMID: 29080379.
    Citations:    Fields:    
  25. Zhang F, Savadjiev P, Cai W, Song Y, Rathi Y, Tunç B, Parker D, Kapur T, Schultz RT, Makris N, Verma R, O'Donnell LJ. Whole brain white matter connectivity analysis using machine learning: An application to autism. Neuroimage. 2018 05 15; 172:826-837. PMID: 29079524.
    Citations: 3     Fields:    Translation:Humans
  26. Makris N, Zhu A, Papadimitriou GM, Mouradian P, Ng I, Scaccianoce E, Baselli G, Baglio F, Shenton ME, Rathi Y, Dickerson B, Yeterian E, Kubicki M. Mapping temporo-parietal and temporo-occipital cortico-cortical connections of the human middle longitudinal fascicle in subject-specific, probabilistic, and stereotaxic Talairach spaces. Brain Imaging Behav. 2017 Oct; 11(5):1258-1277. PMID: 27714552.
    Citations: 2     Fields:    Translation:Humans
  27. Levitt JJ, Nestor PG, Levin L, Pelavin P, Lin P, Kubicki M, McCarley RW, Shenton ME, Rathi Y. Reduced Structural Connectivity in Frontostriatal White Matter Tracts in the Associative Loop in Schizophrenia. Am J Psychiatry. 2017 11 01; 174(11):1102-1111. PMID: 28945119.
    Citations:    Fields:    Translation:Humans
  28. Ning L, Rathi Y. A Dynamic Regression Approach for Frequency-Domain Partial Coherence and Causality Analysis of Functional Brain Networks. IEEE Trans Med Imaging. 2018 09; 37(9):1957-1969. PMID: 28816657.
    Citations:    Fields:    
  29. Liao R, Ning L, Chen Z, Rigolo L, Gong S, Pasternak O, Golby AJ, Rathi Y, O'Donnell LJ. Performance of unscented Kalman filter tractography in edema: Analysis of the two-tensor model. Neuroimage Clin. 2017; 15:819-831. PMID: 28725549.
    Citations:    Fields:    Translation:HumansCells
  30. Kikinis Z, Muehlmann M, Pasternak O, Peled S, Kulkarni P, Ferris C, Bouix S, Rathi Y, Koerte IK, Pieper S, Yarmarkovich A, Porter CL, Kristal BS, Shenton ME. Diffusion imaging of mild traumatic brain injury in the impact accelerated rodent model: A pilot study. Brain Inj. 2017; 31(10):1376-1381. PMID: 28627942.
    Citations:    Fields:    Translation:Animals
  31. Joo SW, Chon MW, Rathi Y, Shenton ME, Kubicki M, Lee J. Abnormal asymmetry of white matter tracts between ventral posterior cingulate cortex and middle temporal gyrus in recent-onset schizophrenia. Schizophr Res. 2018 02; 192:159-166. PMID: 28506703.
    Citations:    Fields:    Translation:Humans
  32. Setsompop K, Fan Q, Stockmann J, Bilgic B, Huang S, Cauley SF, Nummenmaa A, Wang F, Rathi Y, Witzel T, Wald LL. High-resolution in vivo diffusion imaging of the human brain with generalized slice dithered enhanced resolution: Simultaneous multislice (gSlider-SMS). Magn Reson Med. 2018 Jan; 79(1):141-151. PMID: 28261904.
    Citations: 6     Fields:    Translation:Humans
  33. Olszewski AK, Kikinis Z, Gonzalez CS, Coman IL, Makris N, Gong X, Rathi Y, Zhu A, Antshel KM, Fremont W, Kubicki MR, Bouix S, Shenton ME, Kates WR. The social brain network in 22q11.2 deletion syndrome: a diffusion tensor imaging study. Behav Brain Funct. 2017 Feb 16; 13(1):4. PMID: 28209179.
    Citations: 1     Fields:    Translation:Humans
  34. Shaffer JJ, Ghayoor A, Long JD, Kim RE, Lourens S, O'Donnell LJ, Westin CF, Rathi Y, Magnotta V, Paulsen JS, Johnson HJ. Longitudinal diffusion changes in prodromal and early HD: Evidence of white-matter tract deterioration. Hum Brain Mapp. 2017 03; 38(3):1460-1477. PMID: 28045213.
    Citations: 4     Fields:    Translation:HumansCells
  35. Makris N, Rathi Y, Mouradian P, Bonmassar G, Papadimitriou G, Ing WI, Yeterian EH, Kubicki M, Eskandar EN, Wald LL, Fan Q, Nummenmaa A, Widge AS, Dougherty DD. Variability and anatomical specificity of the orbitofrontothalamic fibers of passage in the ventral capsule/ventral striatum (VC/VS): precision care for patient-specific tractography-guided targeting of deep brain stimulation (DBS) in obsessive compulsive disorder (OCD). Brain Imaging Behav. 2016 12; 10(4):1054-1067. PMID: 26518214.
    Citations: 7     Fields:    Translation:Humans
  36. O'Donnell LJ, Suter Y, Rigolo L, Kahali P, Zhang F, Norton I, Albi A, Olubiyi O, Meola A, Essayed WI, Unadkat P, Ciris PA, Wells WM, Rathi Y, Westin CF, Golby AJ. Automated white matter fiber tract identification in patients with brain tumors. Neuroimage Clin. 2017; 13:138-153. PMID: 27981029.
    Citations: 7     Fields:    Translation:Humans
  37. Ning L, Özarslan E, Westin CF, Rathi Y. Precise Inference and Characterization of Structural Organization (PICASO) of tissue from molecular diffusion. Neuroimage. 2017 02 01; 146:452-473. PMID: 27751940.
    Citations: 2     Fields:    Translation:HumansCells
  38. Ning L, Setsompop K, Westin CF, Rathi Y. New insights about time-varying diffusivity and its estimation from diffusion MRI. Magn Reson Med. 2017 08; 78(2):763-774. PMID: 27611013.
    Citations: 1     Fields:    Translation:Humans
  39. Ning L, Setsompop K, Michailovich O, Makris N, Shenton ME, Westin CF, Rathi Y. Corrigendum to "A joint compressed-sensing and super-resolution approach for very high-resolution diffusion imaging". Neuroimage. 2016 11 15; 142:696. PMID: 27490271.
    Citations:    Fields:    
  40. Mirzaalian H, Ning L, Savadjiev P, Pasternak O, Bouix S, Michailovich O, Grant G, Marx CE, Morey RA, Flashman LA, George MS, McAllister TW, Andaluz N, Shutter L, Coimbra R, Zafonte RD, Coleman MJ, Kubicki M, Westin CF, Stein MB, Shenton ME, Rathi Y. Inter-site and inter-scanner diffusion MRI data harmonization. Neuroimage. 2016 07 15; 135:311-23. PMID: 27138209.
    Citations: 6     Fields:    Translation:Humans
  41. Reddy CP, Rathi Y. Joint Multi-Fiber NODDI Parameter Estimation and Tractography Using the Unscented Information Filter. Front Neurosci. 2016; 10:166. PMID: 27147956.
    Citations: 2     
  42. Ning L, Westin CF, Rathi Y. Estimation of Bounded and Unbounded Trajectories in Diffusion MRI. Front Neurosci. 2016; 10:129. PMID: 27064745.
    Citations: 2     
  43. Chen Z, Tie Y, Olubiyi O, Zhang F, Mehrtash A, Rigolo L, Kahali P, Norton I, Pasternak O, Rathi Y, Golby AJ, O'Donnell LJ. Corticospinal tract modeling for neurosurgical planning by tracking through regions of peritumoral edema and crossing fibers using two-tensor unscented Kalman filter tractography. Int J Comput Assist Radiol Surg. 2016 Aug; 11(8):1475-86. PMID: 26762104.
    Citations: 7     Fields:    Translation:Humans
  44. Wassermann D, Makris N, Rathi Y, Shenton M, Kikinis R, Kubicki M, Westin CF. The white matter query language: a novel approach for describing human white matter anatomy. Brain Struct Funct. 2016 12; 221(9):4705-4721. PMID: 26754839.
    Citations: 10     Fields:    Translation:Humans
  45. Mirzaalian H, de Pierrefeu A, Savadjiev P, Pasternak O, Bouix S, Kubicki M, Westin CF, Shenton ME, Rathi Y. Harmonizing Diffusion MRI Data Across Multiple Sites and Scanners. Med Image Comput Comput Assist Interv. 2015 Oct; 9349:12-19. PMID: 27754499.
    Citations: 3     Fields:    Translation:Humans
  46. Ning L, Laun F, Gur Y, DiBella EV, Deslauriers-Gauthier S, Megherbi T, Ghosh A, Zucchelli M, Menegaz G, Fick R, St-Jean S, Paquette M, Aranda R, Descoteaux M, Deriche R, O'Donnell L, Rathi Y. Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use? Med Image Anal. 2015 Dec; 26(1):316-31. PMID: 26606457.
    Citations: 8     Fields:    Translation:Humans
  47. Ning L, Setsompop K, Michailovich O, Makris N, Shenton ME, Westin CF, Rathi Y. A joint compressed-sensing and super-resolution approach for very high-resolution diffusion imaging. Neuroimage. 2016 Jan 15; 125:386-400. PMID: 26505296.
    Citations: 5     Fields:    Translation:Humans
  48. Feng Y, Wu Y, Rathi Y, Westin CF. Sparse deconvolution of higher order tensor for fiber orientation distribution estimation. Artif Intell Med. 2015 Nov; 65(3):229-38. PMID: 26428956.
    Citations: 1     Fields:    Translation:HumansCells
  49. Yang JC, Papadimitriou G, Eckbo R, Yeterian EH, Liang L, Dougherty DD, Bouix S, Rathi Y, Shenton M, Kubicki M, Eskandar EN, Makris N. Multi-tensor investigation of orbitofrontal cortex tracts affected in subcaudate tractotomy. Brain Imaging Behav. 2015 Jun; 9(2):342-52. PMID: 25103312.
    Citations: 2     Fields:    Translation:Humans
  50. Koerte IK, Lin AP, Willems A, Muehlmann M, Hufschmidt J, Coleman MJ, Green I, Liao H, Tate DF, Wilde EA, Pasternak O, Bouix S, Rathi Y, Bigler ED, Stern RA, Shenton ME. A review of neuroimaging findings in repetitive brain trauma. Brain Pathol. 2015 May; 25(3):318-49. PMID: 25904047.
    Citations: 13     Fields:    Translation:Humans
  51. Ning L, Westin CF, Rathi Y. Estimating diffusion propagator and its moments using directional radial basis functions. IEEE Trans Med Imaging. 2015 Oct; 34(10):2058-78. PMID: 25838518.
    Citations: 6     Fields:    Translation:Humans
  52. Chen Z, Tie Y, Olubiyi O, Rigolo L, Mehrtash A, Norton I, Pasternak O, Rathi Y, Golby AJ, O'Donnell LJ. Reconstruction of the arcuate fasciculus for surgical planning in the setting of peritumoral edema using two-tensor unscented Kalman filter tractography. Neuroimage Clin. 2015; 7:815-22. PMID: 26082890.
    Citations: 8     Fields:    Translation:HumansCellsCTClinical Trials
  53. Nazeri A, Chakravarty MM, Rotenberg DJ, Rajji TK, Rathi Y, Michailovich OV, Voineskos AN. Functional consequences of neurite orientation dispersion and density in humans across the adult lifespan. J Neurosci. 2015 Jan 28; 35(4):1753-62. PMID: 25632148.
    Citations: 9     Fields:    Translation:HumansCells
  54. Ning L, Setsompop K, Michailovich O, Makris N, Westin CF, Rathi Y. A Compressed-Sensing Approach for Super-Resolution Reconstruction of Diffusion MRI. Inf Process Med Imaging. 2015; 24:57-68. PMID: 26221667.
    Citations: 1     Fields:    Translation:HumansCells
  55. Savadjiev P, Rathi Y, Bouix S, Smith AR, Schultz RT, Verma R, Westin CF. Fusion of white and gray matter geometry: a framework for investigating brain development. Med Image Anal. 2014 Dec; 18(8):1349-60. PMID: 25066750.
    Citations: 5     Fields:    Translation:Humans
  56. Rathi Y, Michailovich O, Laun F, Setsompop K, Grant PE, Westin CF. Multi-shell diffusion signal recovery from sparse measurements. Med Image Anal. 2014 Oct; 18(7):1143-56. PMID: 25047866.
    Citations: 9     Fields:    Translation:HumansCells
  57. Asami T, Hyuk Lee S, Bouix S, Rathi Y, Whitford TJ, Niznikiewicz M, Nestor P, McCarley RW, Shenton ME, Kubicki M. Cerebral white matter abnormalities and their associations with negative but not positive symptoms of schizophrenia. Psychiatry Res. 2014 Apr 30; 222(1-2):52-9. PMID: 24650453.
    Citations: 10     Fields:    Translation:HumansCells
  58. Rathi Y, Ning L, Michailovich O, Liao H, Gagoski B, Grant PE, Shenton ME, Stern R, Westin CF, Lin A. Maximum entropy estimation of glutamate and glutamine in MR spectroscopic imaging. Med Image Comput Comput Assist Interv. 2014; 17(Pt 2):749-56. PMID: 25485447.
    Citations:    Fields:    Translation:Humans
  59. Rathi Y, Pasternak O, Savadjiev P, Michailovich O, Bouix S, Kubicki M, Westin CF, Makris N, Shenton ME. Gray matter alterations in early aging: a diffusion magnetic resonance imaging study. Hum Brain Mapp. 2014 Aug; 35(8):3841-56. PMID: 24382651.
    Citations: 6     Fields:    Translation:Humans
  60. Makris N, Preti MG, Wassermann D, Rathi Y, Papadimitriou GM, Yergatian C, Dickerson BC, Shenton ME, Kubicki M. Human middle longitudinal fascicle: segregation and behavioral-clinical implications of two distinct fiber connections linking temporal pole and superior temporal gyrus with the angular gyrus or superior parietal lobule using multi-tensor tractography. Brain Imaging Behav. 2013 Sep; 7(3):335-52. PMID: 23686576.
    Citations: 13     Fields:    Translation:HumansCells
  61. Bouix S, Pasternak O, Rathi Y, Pelavin PE, Zafonte R, Shenton ME. Increased gray matter diffusion anisotropy in patients with persistent post-concussive symptoms following mild traumatic brain injury. PLoS One. 2013; 8(6):e66205. PMID: 23776631.
    Citations: 24     Fields:    Translation:Humans
  62. Gupta A, Toews M, Janardhana R, Rathi Y, Gilmore J, Escolar M, Styner M. Fiber feature map based landmark initialization for highly deformable DTI registration. Proc SPIE Int Soc Opt Eng. 2013 Mar 13; 8669. PMID: 24353392.
    Citations:    
  63. Quan M, Lee SH, Kubicki M, Kikinis Z, Rathi Y, Seidman LJ, Mesholam-Gately RI, Goldstein JM, McCarley RW, Shenton ME, Levitt JJ. White matter tract abnormalities between rostral middle frontal gyrus, inferior frontal gyrus and striatum in first-episode schizophrenia. Schizophr Res. 2013 Apr; 145(1-3):1-10. PMID: 23415471.
    Citations: 22     Fields:    Translation:HumansCells
  64. Savadjiev P, Rathi Y, Bouix S, Smith AR, Schultz RT, Verma R, Westin CF. Combining surface and fiber geometry: an integrated approach to brain morphology. Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):50-7. PMID: 24505648.
    Citations:    Fields:    Translation:HumansCells
  65. Wassermann D, Makris N, Rathi Y, Shenton M, Kikinis R, Kubicki M, Westin CF. On describing human white matter anatomy: the white matter query language. Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):647-54. PMID: 24505722.
    Citations: 11     Fields:    Translation:HumansCells
  66. Rathi Y, Gagoski B, Setsompop K, Michailovich O, Grant PE, Westin CF. Diffusion propagator estimation from sparse measurements in a tractography framework. Med Image Comput Comput Assist Interv. 2013; 16(Pt 3):510-7. PMID: 24505800.
    Citations: 4     Fields:    Translation:HumansCells
  67. Gao Y, Rathi Y, Bouix S, Tannenbaum A. Filtering in the diffeomorphism group and the registration of point sets. IEEE Trans Image Process. 2012 Oct; 21(10):4383-96. PMID: 22752129.
    Citations: 2     Fields:    Translation:Humans
  68. Shenton ME, Hamoda HM, Schneiderman JS, Bouix S, Pasternak O, Rathi Y, Vu MA, Purohit MP, Helmer K, Koerte I, Lin AP, Westin CF, Kikinis R, Kubicki M, Stern RA, Zafonte R. A review of magnetic resonance imaging and diffusion tensor imaging findings in mild traumatic brain injury. Brain Imaging Behav. 2012 Jun; 6(2):137-92. PMID: 22438191.
    Citations: 144     Fields:    Translation:Humans
  69. Savadjiev P, Rathi Y, Bouix S, Verma R, Westin CF. Multi-scale characterization of white matter tract geometry. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):34-41. PMID: 23286111.
    Citations: 2     Fields:    Translation:HumansCells
  70. Melonakos ED, Shenton ME, Rathi Y, Terry DP, Bouix S, Kubicki M. Voxel-based morphometry (VBM) studies in schizophrenia-can white matter changes be reliably detected with VBM? Psychiatry Res. 2011 Aug 30; 193(2):65-70. PMID: 21684124.
    Citations: 27     Fields:    Translation:HumansCells
  71. Venkataraman A, Rathi Y, Kubicki M, Westin CF, Golland P. Joint modeling of anatomical and functional connectivity for population studies. IEEE Trans Med Imaging. 2012 Feb; 31(2):164-82. PMID: 21878411.
    Citations: 11     Fields:    Translation:Humans
  72. Michailovich O, Rathi Y, Dolui S. Spatially regularized compressed sensing for high angular resolution diffusion imaging. IEEE Trans Med Imaging. 2011 May; 30(5):1100-15. PMID: 21536524.
    Citations: 34     Fields:    Translation:Humans
  73. Vaishnav K, Shah S, Pandhi S, Rathi Y. Multifocal bilateral breast masses in HIV-positive status. Indian J Cancer. 2011 Apr-Jun; 48(2):253-5. PMID: 21768677.
    Citations:    Fields:    Translation:HumansCells
  74. Rathi Y, Kubicki M, Bouix S, Westin CF, Goldstein J, Seidman L, Mesholam-Gately R, McCarley RW, Shenton ME. Statistical analysis of fiber bundles using multi-tensor tractography: application to first-episode schizophrenia. Magn Reson Imaging. 2011 May; 29(4):507-15. PMID: 21277725.
    Citations: 13     Fields:    Translation:HumansCells
  75. Wassermann D, Rathi Y, Bouix S, Kubicki M, Kikinis R, Shenton M, Westin CF. White matter bundle registration and population analysis based on Gaussian processes. Inf Process Med Imaging. 2011; 22:320-32. PMID: 21761667.
    Citations: 7     Fields:    Translation:HumansCells
  76. Rathi Y, Michailovich O, Setsompop K, Bouix S, Shenton ME, Westin CF. Sparse multi-shell diffusion imaging. Med Image Comput Comput Assist Interv. 2011; 14(Pt 2):58-65. PMID: 21995013.
    Citations: 20     Fields:    Translation:HumansCells
  77. Lienhard S, Malcolm JG, Westin CF, Rathi Y. A full bi-tensor neural tractography algorithm using the unscented Kalman filter. EURASIP J Adv Signal Process. 2011 Jan 01; 2011. PMID: 24348546.
    Citations: 2     
  78. Malcolm JG, Shenton ME, Rathi Y. Filtered multitensor tractography. IEEE Trans Med Imaging. 2010 Sep; 29(9):1664-75. PMID: 20805043.
    Citations: 37     Fields:    Translation:HumansCells
  79. Rathi Y, Malcolm JG, Michailovich O, Westin CF, Shenton ME, Bouix S. Tensor kernels for simultaneous fiber model estimation and tractography. Magn Reson Med. 2010 Jul; 64(1):138-48. PMID: 20572129.
    Citations: 1     Fields:    Translation:Humans
  80. Rathi Y, Malcolm J, Bouix S, Tannenbaum A, Shenton ME. Affine Registration of label maps in Label Space. J Comput. 2010 Apr; 2(4):1-11. PMID: 26029473.
    Citations:    
  81. Michailovich O, Rathi Y. Fast and accurate reconstruction of HARDI data using compressed sensing. Med Image Comput Comput Assist Interv. 2010; 13(Pt 1):607-14. PMID: 20879281.
    Citations: 8     Fields:    Translation:HumansCells
  82. Rathi Y, Malcolm J, Michailovich O, Goldstein J, Seidman L, McCarley RW, Westin CF, Shenton ME. Biomarkers for identifying first-episode schizophrenia patients using diffusion weighted imaging. Med Image Comput Comput Assist Interv. 2010; 13(Pt 1):657-65. PMID: 20879287.
    Citations: 3     Fields:    Translation:Humans
  83. Venkataraman A, Rathi Y, Kubicki M, Westin CF, Golland P. Joint generative model for fMRI/DWI and its application to population studies. Med Image Comput Comput Assist Interv. 2010; 13(Pt 1):191-9. PMID: 20879231.
    Citations: 5     Fields:    Translation:Humans
  84. Savadjiev P, Rathi Y, Malcolm JG, Shenton ME, Westin CF. A geometry-based particle filtering approach to white matter tractography. Med Image Comput Comput Assist Interv. 2010; 13(Pt 2):233-40. PMID: 20879320.
    Citations: 1     Fields:    Translation:HumansCells
  85. Vaswani N, Rathi Y, Yezzi A, Tannenbaum A. Deform PF-MT: particle filter with mode tracker for tracking nonaffine contour deformations. IEEE Trans Image Process. 2010 Apr; 19(4):841-57. PMID: 19933014.
    Citations: 1     Fields:    
  86. Michailovich O, Rathi Y. On approximation of orientation distributions by means of spherical ridgelets. IEEE Trans Image Process. 2010 Feb; 19(2):461-77. PMID: 19887312.
    Citations: 18     Fields:    Translation:Humans
  87. Malcolm JG, Michailovich O, Bouix S, Westin CF, Shenton ME, Rathi Y. A filtered approach to neural tractography using the Watson directional function. Med Image Anal. 2010 Feb; 14(1):58-69. PMID: 19914856.
    Citations: 19     Fields:    Translation:HumansCells
  88. Rathi Y, Michailovich O, Shenton ME, Bouix S. Directional functions for orientation distribution estimation. Med Image Anal. 2009 Jun; 13(3):432-44. PMID: 19269242.
    Citations: 16     Fields:    Translation:HumansCells
  89. Malcolm JG, Shenton ME, Rathi Y. Two-tensor tractography using a constrained filter. Med Image Comput Comput Assist Interv. 2009; 12(Pt 1):894-902. PMID: 20426073.
    Citations: 5     Fields:    Translation:HumansCells
  90. Malcolm JG, Shenton ME, Rathi Y. Neural tractography using an unscented Kalman filter. Inf Process Med Imaging. 2009; 21:126-38. PMID: 19694258.
    Citations: 17     Fields:    Translation:HumansCells
  91. Dambreville S, Rathi Y, Tannenbaum A. A framework for image segmentation using shape models and kernel space shape priors. IEEE Trans Pattern Anal Mach Intell. 2008 Aug; 30(8):1385-99. PMID: 18566493.
    Citations: 12     Fields:    
  92. Malcolm J, Rathi Y, Yezzi A, Tannenbaum A. Fast approximate surface evolution in arbitrary dimension. Proc SPIE Int Soc Opt Eng. 2008 Mar 11; 6914. PMID: 24392194.
    Citations: 4     
  93. Malcolm J, Rathi Y, Tannenbaum A. A Graph Cut Approach to Image Segmentation in Tensor Space. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2008; 1-8. PMID: 23680693.
    Citations: 7     
  94. N. Vaswani, Y. Rathi, A. Yezzi, A. Tannenbaum. PF-MT with an Interpolation Effective Basis for Tracking Local Contour Deformations. IEEE Trans. Image Processing. 2008.
  95. J. Malcolm, Y. Rathi, M. E. Shenton, A. Tannenbaum. Label Space: A coupled multi-shape represntation. Conference on Medical Imaging computing and computer assisted intervention. 2008.
  96. Y. Rathi, S. Dambreville, J. Levitt, J. Malcolm, M. Neithammer, M. Shenton, A. Tannenbaum. Segmenting Images analytically in shape space. Proceedings of The International Society for Optical Engineering. 2008.
  97. Y. Rathi, O. Michailovich, S. Bouix and M. E. Shenton. Directional Functions for Orientation Distribution Estimation. IEEE International Symposium on Biomedical Imaging. 2008.
  98. Y. Rathi, O. Michailovich, S. Bouix and M. E. Shenton. Orientation Distribution Estimation for Q-Ball imaging. Workshop on Tensor Processing in Computer Vision. 2008.
  99. J. Malcolm, Y. Rathi, A. Tannenbaum. Label Space: A multi-object shape representation. Lecture notes on Computer Science. 2008; 2958:185-196.
  100. Malcolm J, Rathi Y, Shenton ME, Tannenbaum A. Label space: a coupled multi-shape representation. Med Image Comput Comput Assist Interv. 2008; 11(Pt 2):416-24. PMID: 18982632.
    Citations: 2     Fields:    Translation:Humans
  101. O. Michailovich, Y. Rathi, M. E. Shenton. On Approximation of Orientation Distribution by means of Spherical Ridgelets. IEEE International Symposium on Biomedical Imaging. 2008.
  102. Michailovich O, Rathi Y, Tannenbaum A. Image segmentation using active contours driven by the Bhattacharyya gradient flow. IEEE Trans Image Process. 2007 Nov; 16(11):2787-801. PMID: 17990755.
    Citations: 27     Fields:    
  103. Georgiou T, Michailovich O, Rathi Y, Malcolm J, Tannenbaum A. Distribution Metrics and Image Segmentation. Linear Algebra Appl. 2007 Sep 01; 425(2-3):663-672. PMID: 18769529.
    Citations: 1     
  104. Rathi Y, Vaswani N, Tannenbaum A, Yezzi A. Tracking deforming objects using particle filtering for geometric active contours. IEEE Trans Pattern Anal Mach Intell. 2007 Aug; 29(8):1470-5. PMID: 17568149.
    Citations: 8     Fields:    
  105. Rathi Y, Vaswani N, Tannenbaum A. A generic framework for tracking using particle filter with dynamic shape prior. IEEE Trans Image Process. 2007 May; 16(5):1370-82. PMID: 17491466.
    Citations: 6     Fields:    
  106. J. Malcolm, Y. Rathi, A. Tannenbaum. Multi-Object Tracking Through Clutter Using Graph Cuts. Workshop on Non-rigid Registration &Tracking (held in conjunction with ICCV). 2007.
  107. Y. Rathi, O. Michailovich, A. Tannenbaum. Segmenting images on the Tensor Manifold. IEEE Proceedings of Computer Vision and Pattern Recognition {acceptance rate is ~ 20%}. 2007; 2:1-8.
  108. J. Malcolm, Y. Rathi, A. Tannenbaum. Tracking Through Clutter Using Graph Cuts. British Machine Vision Conference. 2007.
  109. J. Malcolm, Y. Rathi, A. Tannenbaum, . Graph cut segmentation with nonlinear shape priors. IEEE International Conference on Image Processing. 2007.
  110. T. Georgiou, O. Michailovich, Y. Rathi, J. Malcolm, A. Tannenbaum, . Distribution metrics and Image Segmentation. Linear Algebra and Its applications. 2007; 425:663-672..
  111. J. Malcolm, Y. Rathi, A. Tannenbaum, . A Graph cut Approach to Image Segmentation in Tensor space. Workshop on Component Analysis held in conjunction with CVPR 2007. 2007; 1:1-8.
  112. S. Dambreville, Y. Rathi, A. Tannenbaum. Unscented Kalman filtering Applied to Geometric Active Contours for Tracking Deformable Objects. American Control Conference (Received the O. Hugo Schuck Best Paper Award ). 2006; 1:2856-2862.
  113. Y. Rathi, O. Michailovich, J. Malcolm, A. Tannenbaum. Seeing the Unseen: Segmenting with Distributions. International Conference on Signal and Image Processing. 2006; 534.
  114. N. Vaswani, A. Yezzi, Y. Rathi, A. Tannenbaum, . Time-varying finite dimensional basis for tracking contour deformations. 45th IEEE Conference on Decision and Control. 2006; 1665-1672.
  115. Y. Rathi, S. Dambreville, A. Tannenbaum. Comparative Analysis of Kernel Methods for Statistical Shape learning. 2nd workshop on Computer Vision Approaches to Medical Image Analysis. 2006; 4241:96-107.
  116. Y. Rathi, S. Dambreville, A. Tannenbaum. Statistical Shape Analysis using kernel PCA. Proceedings of The International Society for Optical Engineering. 2006; 6064:425-432.
  117. N. Vaswani, A. Tannenbaum, Y. Rathi, A. Yezzi. Particle Filters for Infinite (Large) dimensional state spaces-Part I. International Conference on Acoustics Speech and Signal Processing. 2006; 3:14-19.
  118. S. Dambreville, Y. Rathi, A. Tannenbaum. Nonlinear shape prior from kernel space for geometric active contours. Proceedings of The International Society for Optical Engineering. 2006; 6064:325-332.
  119. Y. Rathi, P. Olver, G. Sapiro, A. Tannenbaum. Affine Invariant Surface Evolutions for 3D Image Segmentation. Proceedings of The International Society for Optical Engineering. 2006; 6064:1-5.
  120. S. Dambreville, Y. Rathi, A. Tannenbaum. A Shape-Based Approach to Robust Image Segmentation. Intl. Conference on Image Analysis and Recognition {acceptance rate ~ 25 %}. 2006; 4141:173-183.
  121. Y. Rathi, S. Dambreville, A. Tannenbaum. Particle Filtering with Dynamic Shape Prior. International Conference on Image Analysis Recognition {acceptance rate ~ 25 %}. 2006; 4141:886-897.
  122. S. Dambreville, Y. Rathi, A. Tannenbaum. Shape based approach to Robust Image Segmentation using Kernel PCA. Proceedings of Computer Vision and Pattern Recognition {acceptance rate is ~ 20%}. 2006; 1:977-981.
  123. Y. Rathi. Filtering for Closed Curves. 2006.
  124. Dambreville S, Rathi Y, Tannenbaum A. Shape-Based Approach to Robust Image Segmentation using Kernel PCA. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2006; 977-984. PMID: 23685633.
    Citations: 5     
  125. Y. Rathi, N. Vaswani, A. Tannenbaum, A. Yezzi. Particle Filtering for Geometric Active Contours with Application to Tracking Moving and Deforming Objects. IEEE Proceedings of Computer Vision and Pattern Recognition {oral presentation – top 5% of accepted papers, acceptance rate is ~ 20%}. 2005; 2:2-9.
  126. S. Kumar, Y. Rathi, R. C. Jain. An Efficient Lapped Orthogonal Image Coding Technique. IEEE Transactions on Consumer Electronics. 1997; 43:994-1002.
  127. Y. Rathi. An Efficient Lapped-Orthogonal Transform Image Coding Technique. 1997.
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Funded by the NIH/NCATS Clinical and Translational Science Award (CTSA) program, grant number UL1TR001102, and through institutional support from Harvard University, Harvard Medical School, Harvard T.H. Chan School of Public Health, Beth Israel Deaconess Medical Center, Boston Children's Hospital, Brigham and Women's Hospital, Massachusetts General Hospital and the Dana Farber Cancer Institute.