Harvard Catalyst Profiles

Contact, publication, and social network information about Harvard faculty and fellows.

Andrea Sarah Foulkes, Sc.D.

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Other Positions
Title
Institution
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Research
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. OT2HL161841 (FOULKES, ANDREA S) Jun 10, 2021 - Jun 9, 2022
    NIH
    Interactive Data Portals and Robust Analytic Tools to Wrap PASC Cohorts (iDRAW) OTA-21-015A
    Role: Principal Investigator
  2. R01GM127862 (FOULKES, ANDREA S) Apr 1, 2018 - Mar 31, 2022
    NIH
    Methods for integrated analysis of multi-level omics data
    Role: Principal Investigator
  3. R15GM126485 (FOULKES, ANDREA S) Sep 15, 2017 - Aug 31, 2019
    NIH
    Statistical methods for modeling multi-omic data
    Role: Principal Investigator
  4. U01HL123009 (THOMPSON, BOYD TAYLOR) Jun 17, 2014 - Oct 31, 2022
    NIH
    CCC for NHLBI Prevention and Early Treatment of Acute Lung Injury PETAL Network
    Role: Co-Principal Investigator
  5. R01HL107196 (FOULKES, ANDREA S) Feb 3, 2011 - Jan 31, 2018
    NIH
    Methods for high-dimensional data in HIV/CVD research
    Role: Principal Investigator

Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Bunnell KM, Thaweethai T, Buckless C, Shinnick DJ, Torriani M, Foulkes AS, Bredella MA. Body composition predictors of outcome in patients with COVID-19. Int J Obes (Lond). 2021 Jul 09. PMID: 34244597.
    Citations:    Fields:    
  2. Lau ES, McNeill JN, Paniagua SM, Liu EE, Wang JK, Bassett IV, Selvaggi CA, Lubitz SA, Foulkes AS, Ho JE. Sex differences in inflammatory markers in patients hospitalized with COVID-19 infection: Insights from the MGH COVID-19 patient registry. PLoS One. 2021; 16(4):e0250774. PMID: 33909684.
    Citations: 1     Fields:    Translation:Humans
  3. Lubitz SA, Faranesh AZ, Atlas SJ, McManus DD, Singer DE, Pagoto S, Pantelopoulos A, Foulkes AS. Rationale and design of a large population study to validate software for the assessment of atrial fibrillation from data acquired by a consumer tracker or smartwatch: The Fitbit heart study. Am Heart J. 2021 Aug; 238:16-26. PMID: 33865810.
    Citations:    Fields:    
  4. Memel ZN, Lee JJ, Foulkes AS, Chung RT, Thaweethai T, Bloom PP. Statins Are Associated with Improved 28-day Mortality in Patients Hospitalized with SARS-CoV-2 Infection. medRxiv. 2021 Apr 06. PMID: 33851192.
    Citations:    
  5. McNeill JN, Lau ES, Paniagua SM, Liu EE, Wang JK, Bassett IV, Selvaggi CA, Lubitz SA, Foulkes AS, Ho JE. The role of obesity in inflammatory markers in COVID-19 patients. Obes Res Clin Pract. 2021 Jan-Feb; 15(1):96-99. PMID: 33390322.
    Citations: 2     Fields:    Translation:Humans
  6. Bassett IV, Triant VA, Bunda BA, Selvaggi CA, Shinnick DJ, He W, Lu F, Porneala BC, Cao T, Lubitz SA, Meigs JB, Hsu J, Foulkes AS. Massachusetts general hospital Covid-19 registry reveals two distinct populations of hospitalized patients by race and ethnicity. PLoS One. 2020; 15(12):e0244270. PMID: 33351826.
    Citations: 4     Fields:    Translation:Humans
  7. Snider SB, Bodien YG, Frau-Pascual A, Bianciardi M, Foulkes AS, Edlow BL. Ascending arousal network connectivity during recovery from traumatic coma. Neuroimage Clin. 2020; 28:102503. PMID: 33395992.
    Citations: 1     Fields:    Translation:Humans
  8. Foulkes AS, Selvaggi C, Cao T, O'Reilly ME, Cynn E, Ma P, Lumish H, Xue C, Reilly MP. Nonconserved Long Intergenic Noncoding RNAs Associate With Complex Cardiometabolic Disease Traits. Arterioscler Thromb Vasc Biol. 2021 01; 41(1):501-511. PMID: 33176448.
    Citations: 2     Fields:    Translation:Humans
  9. Robinson LB, Fu X, Bassett IV, Triant VA, Foulkes AS, Zhang Y, Camargo CA, Blumenthal KG. COVID-19 severity in hospitalized patients with asthma: A matched cohort study. J Allergy Clin Immunol Pract. 2021 01; 9(1):497-500. PMID: 33164794.
    Citations: 3     Fields:    Translation:Humans
  10. Stone JH, Frigault MJ, Serling-Boyd NJ, Fernandes AD, Harvey L, Foulkes AS, Horick NK, Healy BC, Shah R, Bensaci AM, Woolley AE, Nikiforow S, Lin N, Sagar M, Schrager H, Huckins DS, Axelrod M, Pincus MD, Fleisher J, Sacks CA, Dougan M, North CM, Halvorsen YD, Thurber TK, Dagher Z, Scherer A, Wallwork RS, Kim AY, Schoenfeld S, Sen P, Neilan TG, Perugino CA, Unizony SH, Collier DS, Matza MA, Yinh JM, Bowman KA, Meyerowitz E, Zafar A, Drobni ZD, Bolster MB, Kohler M, D'Silva KM, Dau J, Lockwood MM, Cubbison C, Weber BN, Mansour MK. Efficacy of Tocilizumab in Patients Hospitalized with Covid-19. N Engl J Med. 2020 12 10; 383(24):2333-2344. PMID: 33085857.
    Citations: 235     Fields:    Translation:Humans
  11. Gu X, Tadesse MG, Foulkes AS, Ma Y, Balasubramanian R. Bayesian variable selection for high dimensional predictors and self-reported outcomes. BMC Med Inform Decis Mak. 2020 09 07; 20(1):212. PMID: 32894123.
    Citations:    Fields:    Translation:Humans
  12. Seiglie J, Platt J, Cromer SJ, Bunda B, Foulkes AS, Bassett IV, Hsu J, Meigs JB, Leong A, Putman MS, Triant VA, Wexler DJ, Manne-Goehler J. Diabetes as a Risk Factor for Poor Early Outcomes in Patients Hospitalized With COVID-19. Diabetes Care. 2020 12; 43(12):2938-2944. PMID: 32847827.
    Citations: 9     Fields:    Translation:Humans
  13. Edlow BL, Barra ME, Zhou DW, Foulkes AS, Snider SB, Threlkeld ZD, Chakravarty S, Kirsch JE, Chan ST, Meisler SL, Bleck TP, Fins JJ, Giacino JT, Hochberg LR, Solt K, Brown EN, Bodien YG. Personalized Connectome Mapping to Guide Targeted Therapy and Promote Recovery of Consciousness in the Intensive Care Unit. Neurocrit Care. 2020 10; 33(2):364-375. PMID: 32794142.
    Citations: 5     Fields:    
  14. Foulkes AS, Balasubramanian R, Qian J, Reilly MP. Non-random sampling leads to biased estimates of transcriptome association. Sci Rep. 2020 04 10; 10(1):6193. PMID: 32277087.
    Citations:    Fields:    Translation:HumansCells
  15. Abdulhaqq SA, Martinez M, Kang G, Rodriguez IV, Nichols SM, Beaumont D, Joseph J, Azzoni L, Yin X, Wise M, Weiner D, Liu Q, Foulkes A, Münch J, Kirchhoff F, Coutifaris C, Tomaras GD, Sariol C, Marx PA, Li Q, Kraiselburd EN, Montaner LJ. Repeated semen exposure decreases cervicovaginal SIVmac251 infection in rhesus macaques. Nat Commun. 2019 08 21; 10(1):3753. PMID: 31434895.
    Citations: 1     Fields:    Translation:HumansAnimalsCells
  16. Ray EL, Qian J, Brecha R, Reilly MP, Foulkes AS. Stochastic imputation for integrated transcriptome association analysis of a longitudinally measured trait. Stat Methods Med Res. 2020 04; 29(4):1167-1180. PMID: 31172883.
    Citations: 1     Fields:    Translation:Cells
  17. Pencina MJ, Parikh CR, Kimmel PL, Cook NR, Coresh J, Feldman HI, Foulkes A, Gimotty PA, Hsu CY, Lemley K, Song P, Wilkins K, Gossett DR, Xie Y, Star RA. Statistical methods for building better biomarkers of chronic kidney disease. Stat Med. 2019 05 20; 38(11):1903-1917. PMID: 30663113.
    Citations: 2     Fields:    Translation:Humans
  18. Qian J, Ray E, Brecha RL, Reilly MP, Foulkes AS. A likelihood-based approach to transcriptome association analysis. Stat Med. 2019 04 15; 38(8):1357-1373. PMID: 30515859.
    Citations:    Fields:    Translation:Humans
  19. Zhang H, Xue C, Wang Y, Shi J, Zhang X, Li W, Nunez S, Foulkes AS, Lin J, Hinkle CC, Yang W, Morrisey EE, Rader DJ, Li M, Reilly MP. Deep RNA Sequencing Uncovers a Repertoire of Human Macrophage Long Intergenic Noncoding RNAs Modulated by Macrophage Activation and Associated With Cardiometabolic Diseases. J Am Heart Assoc. 2017 Nov 13; 6(11). PMID: 29133519.
    Citations: 15     Fields:    Translation:HumansCells
  20. Qian J, Nunez S, Kim S, Reilly MP, Foulkes AS. A score test for genetic class-level association with nonlinear biomarker trajectories. Stat Med. 2017 Aug 30; 36(19):3075-3091. PMID: 28543585.
    Citations: 1     Fields:    Translation:Humans
  21. Chen S, Nunez S, Reilly MP, Foulkes AS. Bayesian variable selection for post-analytic interrogation of susceptibility loci. Biometrics. 2017 06; 73(2):603-614. PMID: 27858978.
    Citations: 1     Fields:    Translation:Humans
  22. Ballantyne RL, Zhang X, Nuñez S, Xue C, Zhao W, Reed E, Salaheen D, Foulkes AS, Li M, Reilly MP. Genome-wide interrogation reveals hundreds of long intergenic noncoding RNAs that associate with cardiometabolic traits. Hum Mol Genet. 2016 07 15; 25(14):3125-3141. PMID: 27288454.
    Citations: 15     Fields:    Translation:HumansCells
  23. Lin J, Hu Y, Nunez S, Foulkes AS, Cieply B, Xue C, Gerelus M, Li W, Zhang H, Rader DJ, Musunuru K, Li M, Reilly MP. Transcriptome-Wide Analysis Reveals Modulation of Human Macrophage Inflammatory Phenotype Through Alternative Splicing. Arterioscler Thromb Vasc Biol. 2016 07; 36(7):1434-47. PMID: 27230130.
    Citations: 14     Fields:    Translation:HumansCells
  24. Qian J, Nunez S, Reed E, Reilly MP, Foulkes AS. A Simple Test of Class-Level Genetic Association Can Reveal Novel Cardiometabolic Trait Loci. PLoS One. 2016; 11(2):e0148218. PMID: 26859766.
    Citations: 5     Fields:    Translation:Humans
  25. Abdulhaqq SA, Zorrilla C, Kang G, Yin X, Tamayo V, Seaton KE, Joseph J, Garced S, Tomaras GD, Linn KA, Foulkes AS, Azzoni L, VerMilyea M, Coutifaris C, Kossenkov AV, Showe L, Kraiselburd EN, Li Q, Montaner LJ. HIV-1-negative female sex workers sustain high cervical IFN?, low immune activation, and low expression of HIV-1-required host genes. Mucosal Immunol. 2016 07; 9(4):1027-38. PMID: 26555708.
    Citations: 11     Fields:    Translation:HumansCells
  26. Reed E, Nunez S, Kulp D, Qian J, Reilly MP, Foulkes AS. A guide to genome-wide association analysis and post-analytic interrogation. Stat Med. 2015 Dec 10; 34(28):3769-92. PMID: 26343929.
    Citations: 25     Fields:    Translation:Humans
  27. Papasavvas E, Foulkes A, Yin X, Joseph J, Ross B, Azzoni L, Kostman JR, Mounzer K, Shull J, Montaner LJ. Plasmacytoid dendritic cell and functional HIV Gag p55-specific T cells before treatment interruption can inform set-point plasma HIV viral load after treatment interruption in chronically suppressed HIV-1(+) patients. Immunology. 2015 Jul; 145(3):380-90. PMID: 25684333.
    Citations: 7     Fields:    Translation:HumansCells
  28. Shah R, Matthews GJ, Shah RY, McLaughlin C, Chen J, Wolman M, Master SR, Chai B, Xie D, Rader DJ, Raj DS, Mehta NN, Budoff M, Fischer MJ, Go AS, Townsend RR, He J, Kusek JW, Feldman HI, Foulkes AS, Reilly MP. Serum Fractalkine (CX3CL1) and Cardiovascular Outcomes and Diabetes: Findings From the Chronic Renal Insufficiency Cohort (CRIC) Study. Am J Kidney Dis. 2015 Aug; 66(2):266-73. PMID: 25795074.
    Citations: 11     Fields:    Translation:Humans
  29. Abdulhaqq SA, Martinez MI, Kang G, Foulkes AS, Rodriguez IV, Nichols SM, Hunter M, Sariol CA, Ruiz LA, Ross BN, Yin X, Speicher DW, Haase AT, Marx PA, Li Q, Kraiselburd EN, Montaner LJ. Serial cervicovaginal exposures with replication-deficient SIVsm induce higher dendritic cell (pDC) and CD4+ T-cell infiltrates not associated with prevention but a more severe SIVmac251 infection of rhesus macaques. . 2014 Apr 01; 65(4):405-13. PMID: 24226059.
    Citations: 7     Translation:AnimalsCells
  30. Mehta NN, Matthews GJ, Krishnamoorthy P, Shah R, McLaughlin C, Patel P, Budoff M, Chen J, Wolman M, Go A, He J, Kanetsky PA, Master SR, Rader DJ, Raj D, Gadegbeku CA, Shah R, Schreiber M, Fischer MJ, Townsend RR, Kusek J, Feldman HI, Foulkes AS, Reilly MP. Higher plasma CXCL12 levels predict incident myocardial infarction and death in chronic kidney disease: findings from the Chronic Renal Insufficiency Cohort study. Eur Heart J. 2014 Aug 14; 35(31):2115-22. PMID: 24306482.
    Citations: 14     Fields:    Translation:Humans
  31. Haile CN, Murrough JW, Iosifescu DV, Chang LC, Al Jurdi RK, Foulkes A, Iqbal S, Mahoney JJ, De La Garza R, Charney DS, Newton TF, Mathew SJ. Plasma brain derived neurotrophic factor (BDNF) and response to ketamine in treatment-resistant depression. Int J Neuropsychopharmacol. 2014 Feb; 17(2):331-6. PMID: 24103211.
    Citations: 62     Fields:    Translation:Humans
  32. Ferguson JF, Matthews GJ, Townsend RR, Raj DS, Kanetsky PA, Budoff M, Fischer MJ, Rosas SE, Kanthety R, Rahman M, Master SR, Qasim A, Li M, Mehta NN, Shen H, Mitchell BD, O'Connell JR, Shuldiner AR, Ho WK, Young R, Rasheed A, Danesh J, He J, Kusek JW, Ojo AO, Flack J, Go AS, Gadegbeku CA, Wright JT, Saleheen D, Feldman HI, Rader DJ, Foulkes AS, Reilly MP. Candidate gene association study of coronary artery calcification in chronic kidney disease: findings from the CRIC study (Chronic Renal Insufficiency Cohort). J Am Coll Cardiol. 2013 Aug 27; 62(9):789-98. PMID: 23727086.
    Citations: 12     Fields:    Translation:Humans
  33. Azzoni L, Foulkes AS, Papasavvas E, Mexas AM, Lynn KM, Mounzer K, Tebas P, Jacobson JM, Frank I, O'Doherty U, Kostman J, Montaner LJ. Improved treatment for primary HIV infection by interferon-alfa therapy? Does HCV treatment in HIV/HCV coinfected patients help us to test this hypothesis? Reply to zur Wiesch and van Lunzen. J Infect Dis. 2013 Jul 15; 208(2):363. PMID: 23570845.
    Citations: 3     Fields:    Translation:HumansCells
  34. Foulkes AS, Matthews GJ, Das U, Ferguson JF, Lin R, Reilly MP. Mixed modeling of meta-analysis P-values (MixMAP) suggests multiple novel gene loci for low density lipoprotein cholesterol. PLoS One. 2013; 8(2):e54812. PMID: 23405096.
    Citations: 3     Fields:    Translation:Humans
  35. Mexas AM, Graf EH, Pace MJ, Yu JJ, Papasavvas E, Azzoni L, Busch MP, Di Mascio M, Foulkes AS, Migueles SA, Montaner LJ, O'Doherty U. Concurrent measures of total and integrated HIV DNA monitor reservoirs and ongoing replication in eradication trials. AIDS. 2012 Nov 28; 26(18):2295-306. PMID: 23014521.
    Citations: 48     Fields:    Translation:HumansCells
  36. Azzoni L, Foulkes AS, Papasavvas E, Mexas AM, Lynn KM, Mounzer K, Tebas P, Jacobson JM, Frank I, Busch MP, Deeks SG, Carrington M, O'Doherty U, Kostman J, Montaner LJ. Pegylated Interferon alfa-2a monotherapy results in suppression of HIV type 1 replication and decreased cell-associated HIV DNA integration. J Infect Dis. 2013 Jan 15; 207(2):213-22. PMID: 23105144.
    Citations: 106     Fields:    Translation:HumansCells
  37. Azzoni L, Foulkes AS, Firnhaber C, Yin X, Xiang ZQ, Li Y, Stevens W, Gross R, Ertl HC, Sanne I, Montaner LJ. Antiretroviral therapy interruptions result in loss of protective humoral immunity to neoantigens in HIV-infected individuals. AIDS. 2012 Jul 17; 26(11):1355-62. PMID: 22516873.
    Citations: 2     Fields:    Translation:HumansCells
  38. Azzoni L, Foulkes AS, Liu Y, Li X, Johnson M, Smith C, Kamarulzaman AB, Montaner J, Mounzer K, Saag M, Cahn P, Cesar C, Krolewiecki A, Sanne I, Montaner LJ. Prioritizing CD4 count monitoring in response to ART in resource-constrained settings: a retrospective application of prediction-based classification. PLoS Med. 2012; 9(4):e1001207. PMID: 22529752.
    Citations: 4     Fields:    Translation:HumansCells
  39. Conradie F, Foulkes AS, Ive P, Yin X, Roussos K, Glencross DK, Lawrie D, Stevens W, Montaner LJ, Sanne I, Azzoni L. Natural killer cell activation distinguishes Mycobacterium tuberculosis-mediated immune reconstitution syndrome from chronic HIV and HIV/MTB coinfection. . 2011 Nov 01; 58(3):309-18. PMID: 21826013.
    Citations: 24     Translation:HumansCells
  40. Papasavvas E, Azzoni L, Foulkes A, Violari A, Cotton MF, Pistilli M, Reynolds G, Yin X, Glencross DK, Stevens WS, McIntyre JA, Montaner LJ. Increased microbial translocation in = 180 days old perinatally human immunodeficiency virus-positive infants as compared with human immunodeficiency virus-exposed uninfected infants of similar age. Pediatr Infect Dis J. 2011 Oct; 30(10):877-82. PMID: 21552185.
    Citations: 22     Fields:    Translation:HumansCells
  41. Eliot M, Ferguson J, Reilly MP, Foulkes AS. Ridge regression for longitudinal biomarker data. Int J Biostat. 2011; 7(1):Article 37. PMID: 22049265.
    Citations:    Fields:    Translation:Humans
  42. Liu Y, Foulkes AS. Latent variable modeling paradigms for genotype-trait association studies. Biom J. 2011 Sep; 53(5):838-54. PMID: 21887796.
    Citations: 1     Fields:    Translation:HumansCells
  43. Azzoni L, Foulkes AS, Firnhaber C, Yin X, Crowther NJ, Glencross D, Lawrie D, Stevens W, Papasavvas E, Sanne I, Montaner LJ. Metabolic and anthropometric parameters contribute to ART-mediated CD4+ T cell recovery in HIV-1-infected individuals: an observational study. J Int AIDS Soc. 2011 Jul 29; 14:37. PMID: 21801351.
    Citations: 4     Fields:    Translation:HumansCells
  44. Firnhaber C, Azzoni L, Foulkes AS, Gross R, Yin X, Van Amsterdam D, Schulze D, Glencross DK, Stevens W, Hunt G, Morris L, Fox L, Sanne I, Montaner LJ. Randomized trial of time-limited interruptions of protease inhibitor-based antiretroviral therapy (ART) vs. continuous therapy for HIV-1 infection. PLoS One. 2011; 6(6):e21450. PMID: 21738668.
    Citations: 2     Fields:    Translation:Cells
  45. Au K, Lin R, Foulkes AS. Mixture modelling as an exploratory framework for genotype-trait associations. J R Stat Soc Ser C Appl Stat. 2011 05; 60(3):355-375. PMID: 22368304.
    Citations: 1     
  46. Foulkes AS, Au K. R statistical tools for gene discovery. Methods Mol Biol. 2011; 760:73-90. PMID: 21779991.
    Citations:    Fields:    
  47. Azzoni L, Crowther NJ, Firnhaber C, Foulkes AS, Yin X, Glencross D, Gross R, Kaplan MD, Papasavvas E, Schulze D, Stevens W, van der Merwe T, Waisberg R, Sanne I, Montaner LJ. Association between HIV replication and serum leptin levels: an observational study of a cohort of HIV-1-infected South African women. J Int AIDS Soc. 2010 Sep 07; 13:33. PMID: 20822522.
    Citations: 9     Fields:    Translation:HumansCells
  48. Foulkes AS, Azzoni L, Li X, Johnson MA, Smith C, Mounzer K, Montaner LJ. Prediction based classification for longitudinal biomarkers. Ann Appl Stat. 2010 Sep; 4(3):1476-1497. PMID: 21274424.
    Citations: 6     
  49. Eliot M, Azzoni L, Firnhaber C, Stevens W, Glencross DK, Sanne I, Montaner LJ, Foulkes AS. Tree-Based Methods for Discovery of Association between Flow Cytometry Data and Clinical Endpoints. Adv Bioinformatics. 2009; 2009:235320. PMID: 20145719.
    Citations:    
  50. Li X, Thomas BN, Rich SM, Ecker D, Tumwine JK, Foulkes AS. Estimating and testing haplotype-trait associations in non-diploid populations. J R Stat Soc Ser C Appl Stat. 2009 12; 58(5):663-678. PMID: 20011038.
    Citations: 2     
  51. Mehta N, Trzmielina S, Nonyane BA, Eliot MN, Lin R, Foulkes AS, McNeal K, Ammann A, Eulalievyolo V, Sullivan JL, Luzuriaga K, Somasundaran M. Low-cost HIV-1 diagnosis and quantification in dried blood spots by real time PCR. PLoS One. 2009 Jun 05; 4(6):e5819. PMID: 19503790.
    Citations: 16     Fields:    Translation:HumansCells
  52. Giri MS, Nebozyhn M, Raymond A, Gekonge B, Hancock A, Creer S, Nicols C, Yousef M, Foulkes AS, Mounzer K, Shull J, Silvestri G, Kostman J, Collman RG, Showe L, Montaner LJ. Circulating monocytes in HIV-1-infected viremic subjects exhibit an antiapoptosis gene signature and virus- and host-mediated apoptosis resistance. J Immunol. 2009 Apr 01; 182(7):4459-70. PMID: 19299747.
    Citations: 46     Fields:    Translation:HumansCells
  53. Papasavvas E, Foulkes A, Li X, Kostman JR, Mounzer KC, Montaner LJ. Evidence of a decrease in CD4 recovery once back on antiretroviral therapy after sequential > or =6 weeks antiretroviral therapy interruptions. . 2009 Mar 01; 50(3):334-5. PMID: 19242262.
    Citations: 1     Translation:Humans
  54. Nonyane BA, Foulkes AS. Application of two machine learning algorithms to genetic association studies in the presence of covariates. BMC Genet. 2008 Nov 14; 9:71. PMID: 19014573.
    Citations: 8     Fields:    Translation:Humans
  55. Gross R, Aplenc R, Tenhave T, Foulkes AS, Thakur R, Mosepele M, Barrett JS, Flexner C, Strom BL, Bisson G. Slow efavirenz metabolism genotype is common in Botswana. . 2008 Nov 01; 49(3):336-7. PMID: 18978480.
    Citations: 20     Translation:Humans
  56. Foulkes AS, Yucel R, Reilly MP. Mixed modeling and multiple imputation for unobservable genotype clusters. Stat Med. 2008 Jul 10; 27(15):2784-801. PMID: 17893946.
    Citations: 7     Fields:    
  57. Foulkes AS, Yucel R, Li X. A likelihood-based approach to mixed modeling with ambiguity in cluster identifiers. Biostatistics. 2008 Oct; 9(4):635-57. PMID: 18343883.
    Citations: 7     Fields:    Translation:HumansCells
  58. DeMichele A, Gimotty P, Botbyl J, Aplenc R, Colligon T, Foulkes AS, Rebbeck TR. In response to "Drug metabolizing enzyme polymorphisms predict clinical outcome in a node-positive breast cancer cohort". J Clin Oncol. 2007 Dec 10; 25(35):5675-7. PMID: 18065748.
    Citations: 4     Fields:    Translation:Humans
  59. Li X, Foulkes AS, Yucel RM, Rich SM. An expectation maximization approach to estimate malaria haplotype frequencies in multiply infected children. Stat Appl Genet Mol Biol. 2007; 6:Article33. PMID: 18052916.
    Citations: 10     Fields:    Translation:HumansAnimals
  60. Chehimi J, Azzoni L, Farabaugh M, Creer SA, Tomescu C, Hancock A, Mackiewicz A, D'Alessandro L, Ghanekar S, Foulkes AS, Mounzer K, Kostman J, Montaner LJ. Baseline viral load and immune activation determine the extent of reconstitution of innate immune effectors in HIV-1-infected subjects undergoing antiretroviral treatment. J Immunol. 2007 Aug 15; 179(4):2642-50. PMID: 17675528.
    Citations: 32     Fields:    Translation:HumansCellsCTClinical Trials
  61. Stone J, Foulkes A, Adamson K, Stevenson L, Al-Shahi Salman R. Thyrotoxicosis presenting with headache. Cephalalgia. 2007 Jun; 27(6):561-2. PMID: 17598793.
    Citations: 1     Fields:    Translation:Humans
  62. Azzoni L, Chehimi J, Zhou L, Foulkes AS, June R, Maino VC, Landay A, Rinaldo C, Jacobson LP, Montaner LJ. Early and delayed benefits of HIV-1 suppression: timeline of recovery of innate immunity effector cells. AIDS. 2007 Jan 30; 21(3):293-305. PMID: 17255736.
    Citations: 14     Fields:    Translation:HumansCells
  63. Foulkes AS, DeGruttola VG. A resampling-based approach to multiple testing with uncertainty in phase. Int J Biostat. 2007; 3(1):Article 2. PMID: 22550644.
    Citations: 1     Fields:    Translation:HumansCells
  64. Nonyane BA, Foulkes AS. Multiple imputation and random forests (MIRF) for unobservable, high-dimensional data. Int J Biostat. 2007; 3(1):Article 12. PMID: 22550652.
    Citations: 3     Fields:    Translation:HumansCells
  65. Sathiyaseelan J, Goenka R, Parent M, Benson RM, Murphy EA, Fernandes DM, Foulkes AS, Baldwin CL. Treatment of Brucella-susceptible mice with IL-12 increases primary and secondary immunity. Cell Immunol. 2006 Sep; 243(1):1-9. PMID: 17184756.
    Citations: 21     Fields:    Translation:AnimalsCells
  66. Foulkes AS, Wohl DA, Frank I, Puleo E, Restine S, Wolfe ML, Dube MP, Tebas P, Reilly MP. Associations among race/ethnicity, ApoC-III genotypes, and lipids in HIV-1-infected individuals on antiretroviral therapy. PLoS Med. 2006 Mar; 3(3):e52. PMID: 16417409.
    Citations: 37     Fields:    Translation:HumansCells
  67. Papasavvas E, Kostman JR, Thiel B, Pistilli M, Mackiewicz A, Foulkes A, Gross R, Jordan KA, Nixon DF, Grant R, Poulin JF, McCune JM, Mounzer K, Montaner LJ. HIV-1-specific CD4+ T cell responses in chronically HIV-1 infected blippers on antiretroviral therapy in relation to viral replication following treatment interruption. J Clin Immunol. 2006 Jan; 26(1):40-54. PMID: 16418802.
    Citations: 10     Fields:    Translation:HumansCells
  68. DeMichele A, Aplenc R, Botbyl J, Colligan T, Wray L, Klein-Cabral M, Foulkes A, Gimotty P, Glick J, Weber B, Stadtmauer E, Rebbeck TR. Drug-metabolizing enzyme polymorphisms predict clinical outcome in a node-positive breast cancer cohort. J Clin Oncol. 2005 Aug 20; 23(24):5552-9. PMID: 16110016.
    Citations: 14     Fields:    Translation:Humans
  69. Reilly MP, Foulkes AS, Wolfe ML, Rader DJ. Higher order lipase gene association with plasma triglycerides. J Lipid Res. 2005 Sep; 46(9):1914-22. PMID: 15961789.
    Citations: 4     Fields:    Translation:Humans
  70. Zhao JX, Foulkes AS, George EI. Exploratory Bayesian model selection for serial genetics data. Biometrics. 2005 Jun; 61(2):591-9. PMID: 16011709.
    Citations: 3     Fields:    Translation:HumansCells
  71. Foulkes AS, Reilly M, Zhou L, Wolfe M, Rader DJ. Mixed modelling to characterize genotype-phenotype associations. Stat Med. 2005 Mar 15; 24(5):775-89. PMID: 15696502.
    Citations: 9     Fields:    Translation:Humans
  72. Papasavvas E, Kostman JR, Mounzer K, Grant RM, Gross R, Gallo C, Azzoni L, Foulkes A, Thiel B, Pistilli M, Mackiewicz A, Shull J, Montaner LJ. Randomized, controlled trial of therapy interruption in chronic HIV-1 infection. PLoS Med. 2004 Dec; 1(3):e64. PMID: 15630469.
    Citations: 32     Fields:    Translation:HumansCells
  73. De Gruttola V, Foulkes AS. Validation and discovery in Markov models of genetics data. Stat Appl Genet Mol Biol. 2004; 3:Article38. PMID: 16646818.
    Citations: 1     Fields:    
  74. Bastone L, Reilly M, Rader DJ, Foulkes AS. MDR and PRP: a comparison of methods for high-order genotype-phenotype associations. Hum Hered. 2004; 58(2):82-92. PMID: 15711088.
    Citations: 21     Fields:    Translation:Humans
  75. Foulkes AS, DeGruttola V. Characterizing classes of antiretroviral drugs by genotype. Stat Med. 2003 Aug 30; 22(16):2637-55. PMID: 12898549.
    Citations: 2     Fields:    Translation:HumansCells
  76. Foulkes AS, De GV. Characterizing the relationship between HIV-1 genotype and phenotype: prediction-based classification. Biometrics. 2002 Mar; 58(1):145-56. PMID: 11890310.
    Citations: 9     Fields:    Translation:HumansCells
  77. Sevin AD, DeGruttola V, Nijhuis M, Schapiro JM, Foulkes AS, Para MF, Boucher CA. Methods for investigation of the relationship between drug-susceptibility phenotype and human immunodeficiency virus type 1 genotype with applications to AIDS clinical trials group 333. J Infect Dis. 2000 Jul; 182(1):59-67. PMID: 10882582.
    Citations: 19     Fields:    Translation:HumansCellsCTClinical Trials
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.