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Andriy Fedorov, Ph.D.

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  1. U24CA180918 (KIKINIS, RON) Sep 4, 2013 - Aug 31, 2018
    NIH/NCI
    Quantitative Image Informatics for Cancer Research (QIICR)
    Role Description: http://qiicr.org
    Role: Co-PI

Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Alessandrino F, Taghipour M, Hassanzadeh E, Ziaei A, Vangel M, Fedorov A, Tempany CM, Fennessy FM. Predictive role of PI-RADSv2 and ADC parameters in differentiating Gleason pattern 3?+?4 and 4?+?3 prostate cancer. Abdom Radiol (NY). 2018 Jul 31. PMID: 30066169.
    View in: PubMed
  2. Hassanzadeh E, Alessandrino F, Olubiyi OI, Glazer DI, Mulkern RV, Fedorov A, Tempany CM, Fennessy FM. Comparison of quantitative apparent diffusion coefficient parameters with prostate imaging reporting and data system V2 assessment for detection of clinically significant peripheral zone prostate cancer. Abdom Radiol (NY). 2018 May; 43(5):1237-1244. PMID: 28840280.
    View in: PubMed
  3. Herz C, Fillion-Robin JC, Onken M, Riesmeier J, Lasso A, Pinter C, Fichtinger G, Pieper S, Clunie D, Kikinis R, Fedorov A. dcmqi: An Open Source Library for Standardized Communication of Quantitative Image Analysis Results Using DICOM. Cancer Res. 2017 11 01; 77(21):e87-e90. PMID: 29092948.
    View in: PubMed
  4. van Griethuysen JJM, Fedorov A, Parmar C, Hosny A, Aucoin N, Narayan V, Beets-Tan RGH, Fillion-Robin JC, Pieper S, Aerts HJWL. Computational Radiomics System to Decode the Radiographic Phenotype. Cancer Res. 2017 11 01; 77(21):e104-e107. PMID: 29092951.
    View in: PubMed
  5. Malyarenko D, Fedorov A, Bell L, Prah M, Hectors S, Arlinghaus L, Muzi M, Solaiyappan M, Jacobs M, Fung M, Shukla-Dave A, McManus K, Boss M, Taouli B, Yankeelov TE, Quarles CC, Schmainda K, Chenevert TL, Newitt DC. Toward uniform implementation of parametric map Digital Imaging and Communication in Medicine standard in multisite quantitative diffusion imaging studies. J Med Imaging (Bellingham). 2018 Jan; 5(1):011006. PMID: 29134189.
    View in: PubMed
  6. Newitt DC, Malyarenko D, Chenevert TL, Quarles CC, Bell L, Fedorov A, Fennessy F, Jacobs MA, Solaiyappan M, Hectors S, Taouli B, Muzi M, Kinahan PE, Schmainda KM, Prah MA, Taber EN, Kroenke C, Huang W, Arlinghaus LR, Yankeelov TE, Cao Y, Aryal M, Yen YF, Kalpathy-Cramer J, Shukla-Dave A, Fung M, Liang J, Boss M, Hylton N. Multisite concordance of apparent diffusion coefficient measurements across the NCI Quantitative Imaging Network. J Med Imaging (Bellingham). 2018 Jan; 5(1):011003. PMID: 29021993.
    View in: PubMed
  7. Chennubhotla C, Clarke LP, Fedorov A, Foran D, Harris G, Helton E, Nordstrom R, Prior F, Rubin D, Saltz JH, Shalley E, Sharma A. An Assessment of Imaging Informatics for Precision Medicine in Cancer. Yearb Med Inform. 2017 Aug; 26(1):110-119. PMID: 29063549.
    View in: PubMed
  8. Fedorov A, Vangel MG, Tempany CM, Fennessy FM. Multiparametric Magnetic Resonance Imaging of the Prostate: Repeatability of Volume and Apparent Diffusion Coefficient Quantification. Invest Radiol. 2017 09; 52(9):538-546. PMID: 28463931.
    View in: PubMed
  9. Velez E, Fedorov A, Tuncali K, Olubiyi O, Allard CB, Kibel AS, Tempany CM. Pathologic correlation of transperineal in-bore 3-Tesla magnetic resonance imaging-guided prostate biopsy samples with radical prostatectomy specimen. Abdom Radiol (NY). 2017 08; 42(8):2154-2159. PMID: 28293720.
    View in: PubMed
  10. Langkilde F, Kobus T, Fedorov A, Dunne R, Tempany C, Mulkern RV, Maier SE. Evaluation of fitting models for prostate tissue characterization using extended-range b-factor diffusion-weighted imaging. Magn Reson Med. 2018 Apr; 79(4):2346-2358. PMID: 28718517.
    View in: PubMed
  11. Glazer DI, Hassanzadeh E, Fedorov A, Olubiyi OI, Goldberger SS, Penzkofer T, Flood TA, Masry P, Mulkern RV, Hirsch MS, Tempany CM, Fennessy FM. Diffusion-weighted endorectal MR imaging at 3T for prostate cancer: correlation with tumor cell density and percentage Gleason pattern on whole mount pathology. Abdom Radiol (NY). 2017 03; 42(3):918-925. PMID: 27770164.
    View in: PubMed
  12. Mehrtash A, Pesteie M, Hetherington J, Behringer PA, Kapur T, Wells WM, Rohling R, Fedorov A, Abolmaesumi P. DeepInfer: Open-Source Deep Learning Deployment Toolkit for Image-Guided Therapy. Proc SPIE Int Soc Opt Eng. 2017 Feb 11; 10135. PMID: 28615794.
    View in: PubMed
  13. Mehrtash A, Sedghi A, Ghafoorian M, Taghipour M, Tempany CM, Wells WM, Kapur T, Mousavi P, Abolmaesumi P, Fedorov A. Classification of Clinical Significance of MRI Prostate Findings Using 3D Convolutional Neural Networks. Proc SPIE Int Soc Opt Eng. 2017 Feb 11; 10134. PMID: 28615793.
    View in: PubMed
  14. Nishino M, Sacher AG, Gandhi L, Chen Z, Akbay E, Fedorov A, Westin CF, Hatabu H, Johnson BE, Hammerman P, Wong KK. Co-clinical quantitative tumor volume imaging in ALK-rearranged NSCLC treated with crizotinib. Eur J Radiol. 2017 Mar; 88:15-20. PMID: 28189201.
    View in: PubMed
  15. Kapur T, Pieper S, Fedorov A, Fillion-Robin JC, Halle M, O'Donnell L, Lasso A, Ungi T, Pinter C, Finet J, Pujol S, Jagadeesan J, Tokuda J, Norton I, Estepar RSJ, Gering D, Aerts HJWL, Jakab M, Hata N, Ibanez L, Blezek D, Miller J, Aylward S, Grimson WEL, Fichtinger G, Wells WM, Lorensen WE, Schroeder W, Kikinis R. Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience. Med Image Anal. 2016 10; 33:176-180. PMID: 27498015.
    View in: PubMed
  16. Li X, Li C, Fedorov A, Kapur T, Yang X. Segmentation of prostate from ultrasound images using level sets on active band and intensity variation across edges. Med Phys. 2016 Jun; 43(6):3090-3103. PMID: 27277056; PMCID: PMC4884187 [Available on 06/01/17].
  17. Fedorov A, Tuncali K, Panych LP, Fairhurst J, Hassanzadeh E, Seethamraju RT, Tempany CM, Maier SE. Segmented diffusion-weighted imaging of the prostate: Application to transperineal in-bore 3T MR image-guided targeted biopsy. Magn Reson Imaging. 2016 10; 34(8):1146-54. PMID: 27240900; PMCID: PMC4993653 [Available on 10/01/17].
  18. Fedorov A, Clunie D, Ulrich E, Bauer C, Wahle A, Brown B, Onken M, Riesmeier J, Pieper S, Kikinis R, Buatti J, Beichel RR. DICOM for quantitative imaging biomarker development: a standards based approach to sharing clinical data and structured PET/CT analysis results in head and neck cancer research. PeerJ. 2016; 4:e2057. PMID: 27257542; PMCID: PMC4888317.
  19. Behringer PA, Herz C, Penzkofer T, Tuncali K, Tempany CM, Fedorov A. Open-Source Platform for Prostate Motion Tracking During in-Bore Targeted MRI-Guided Biopsy. Clin Image Based Proced. 2016; 9401:122-129. PMID: 27135064.
    View in: PubMed
  20. Huang W, Chen Y, Fedorov A, Li X, Jajamovich GH, Malyarenko DI, Aryal MP, LaViolette PS, Oborski MJ, O'Sullivan F, Abramson RG, Jafari-Khouzani K, Afzal A, Tudorica A, Moloney B, Gupta SN, Besa C, Kalpathy-Cramer J, Mountz JM, Laymon CM, Muzi M, Schmainda K, Cao Y, Chenevert TL, Taouli B, Yankeelov TE, Fennessy F, Li X. The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge. Tomography. 2016 Mar; 2(1):56-66. PMID: 27200418.
    View in: PubMed
  21. Mehrtash A, Gupta SN, Shanbhag D, Miller JV, Kapur T, Fennessy FM, Kikinis R, Fedorov A. Bolus arrival time and its effect on tissue characterization with dynamic contrast-enhanced magnetic resonance imaging. J Med Imaging (Bellingham). 2016 Jan; 3(1):014503. PMID: 26989759; PMCID: PMC4773735 [Available on 03/01/17].
  22. Fedorov A, Khallaghi S, Sánchez CA, Lasso A, Fels S, Tuncali K, Sugar EN, Kapur T, Zhang C, Wells W, Nguyen PL, Abolmaesumi P, Tempany C. Open-source image registration for MRI-TRUS fusion-guided prostate interventions. Int J Comput Assist Radiol Surg. 2015 Jun; 10(6):925-34. PMID: 25847666; PMCID: PMC4451374.
  23. Fennessy FM, Fedorov A, Penzkofer T, Kim KW, Hirsch MS, Vangel MG, Masry P, Flood TA, Chang MC, Tempany CM, Mulkern RV, Gupta SN. Quantitative pharmacokinetic analysis of prostate cancer DCE-MRI at 3T: comparison of two arterial input functions on cancer detection with digitized whole mount histopathological validation. Magn Reson Imaging. 2015 Sep; 33(7):886-94. PMID: 25683515; PMCID: PMC4465997.
  24. Yamauchi FI, Penzkofer T, Fedorov A, Fennessy FM, Chu R, Maier SE, Tempany CM, Mulkern RV, Panych LP. Prostate cancer discrimination in the peripheral zone with a reduced field-of-view T(2)-mapping MRI sequence. Magn Reson Imaging. 2015 Jun; 33(5):525-30. PMID: 25687187; PMCID: PMC4426240.
  25. Fedorov A, Penzkofer T, Hirsch MS, Flood TA, Vangel MG, Masry P, Tempany CM, Mulkern RV, Fennessy FM. The role of pathology correlation approach in prostate cancer index lesion detection and quantitative analysis with multiparametric MRI. Acad Radiol. 2015 May; 22(5):548-55. PMID: 25683501; PMCID: PMC4429788.
  26. Tilak G, Tuncali K, Song SE, Tokuda J, Olubiyi O, Fennessy F, Fedorov A, Penzkofer T, Tempany C, Hata N. 3T MR-guided in-bore transperineal prostate biopsy: A comparison of robotic and manual needle-guidance templates. J Magn Reson Imaging. 2015 Jul; 42(1):63-71. PMID: 25263213; PMCID: PMC4376663.
  27. Penzkofer T, Tuncali K, Fedorov A, Song SE, Tokuda J, Fennessy FM, Vangel MG, Kibel AS, Mulkern RV, Wells WM, Hata N, Tempany CM. Transperineal in-bore 3-T MR imaging-guided prostate biopsy: a prospective clinical observational study. Radiology. 2015 Jan; 274(1):170-80. PMID: 25222067; PMCID: PMC4334270.
  28. Murciano-Goroff YR, Wolfsberger LD, Parekh A, Fennessy FM, Tuncali K, Orio PF, Niedermayr TR, Suh WW, Devlin PM, Tempany CM, Sugar EH, O'Farrell DA, Steele G, O'Leary M, Buzurovic I, Damato AL, Cormack RA, Fedorov AY, Nguyen PL. Variability in MRI vs. ultrasound measures of prostate volume and its impact on treatment recommendations for favorable-risk prostate cancer patients: a case series. Radiat Oncol. 2014 Sep 09; 9:200. PMID: 25205146; PMCID: PMC4261899.
  29. Xu H, Lasso A, Fedorov A, Tuncali K, Tempany C, Fichtinger G. Multi-slice-to-volume registration for MRI-guided transperineal prostate biopsy. Int J Comput Assist Radiol Surg. 2015 May; 10(5):563-72. PMID: 25193145; PMCID: PMC4412811.
  30. Fedorov A, Wells WM, Kikinis R, Tempany CM, Vangel MG. Application of tolerance limits to the characterization of image registration performance. IEEE Trans Med Imaging. 2014 Jul; 33(7):1541-50. PMID: 24759985; PMCID: PMC4096345.
  31. Liu Y, Kot A, Drakopoulos F, Yao C, Fedorov A, Enquobahrie A, Clatz O, Chrisochoides NP. An ITK implementation of a physics-based non-rigid registration method for brain deformation in image-guided neurosurgery. Front Neuroinform. 2014; 8:33. PMID: 24778613; PMCID: PMC3985035.
  32. Chenevert TL, Malyarenko DI, Newitt D, Li X, Jayatilake M, Tudorica A, Fedorov A, Kikinis R, Liu TT, Muzi M, Oborski MJ, Laymon CM, Li X, Thomas Y, Jayashree KC, Mountz JM, Kinahan PE, Rubin DL, Fennessy F, Huang W, Hylton N, Ross BD. Errors in Quantitative Image Analysis due to Platform-Dependent Image Scaling. Transl Oncol. 2014 Feb; 7(1):65-71. PMID: 24772209; PMCID: PMC3998685.
  33. Huang W, Li X, Chen Y, Li X, Chang MC, Oborski MJ, Malyarenko DI, Muzi M, Jajamovich GH, Fedorov A, Tudorica A, Gupta SN, Laymon CM, Marro KI, Dyvorne HA, Miller JV, Barbodiak DP, Chenevert TL, Yankeelov TE, Mountz JM, Kinahan PE, Kikinis R, Taouli B, Fennessy F, Kalpathy-Cramer J. Variations of dynamic contrast-enhanced magnetic resonance imaging in evaluation of breast cancer therapy response: a multicenter data analysis challenge. Transl Oncol. 2014 Feb; 7(1):153-66. PMID: 24772219; PMCID: PMC3998693.
  34. Fedorov A, Fluckiger J, Ayers GD, Li X, Gupta SN, Tempany C, Mulkern R, Yankeelov TE, Fennessy FM. A comparison of two methods for estimating DCE-MRI parameters via individual and cohort based AIFs in prostate cancer: a step towards practical implementation. Magn Reson Imaging. 2014 May; 32(4):321-9. PMID: 24560287; PMCID: PMC3965600.
  35. Fedorov A, Song SE, Kapur T, Owen R, Sugar EN, Nguyen P, Wells WM, Tempany CM. Prototype Design and Phantom Evaluation of a Device for Co-registered MRI/TRUS Imaging of the Prostate. Clin Image Based Proced. 2014; 8361:125-133. PMID: 25364786.
    View in: PubMed
  36. Hegde JV, Mulkern RV, Panych LP, Fennessy FM, Fedorov A, Maier SE, Tempany CM. Multiparametric MRI of prostate cancer: an update on state-of-the-art techniques and their performance in detecting and localizing prostate cancer. J Magn Reson Imaging. 2013 May; 37(5):1035-54. PMID: 23606141; PMCID: PMC3741996.
  37. Penzkofer T, Agrawal N, Kapur T, Fedorov A, Cormack RA, D'Amico AV, Tempany CM, Nguyen PL. Location of local recurrence after MRI-guided partial prostate brachytherapy targeting only the peripheral zone: Implications for focal therapy. J Clin Oncol. 2013 Feb 20; 31(6_suppl):149. PMID: 28136859.
    View in: PubMed
  38. Egger J, Kapur T, Fedorov A, Pieper S, Miller JV, Veeraraghavan H, Freisleben B, Golby AJ, Nimsky C, Kikinis R. GBM volumetry using the 3D Slicer medical image computing platform. Sci Rep. 2013; 3:1364. PMID: 23455483; PMCID: PMC3586703.
  39. Pursley J, Risholm P, Fedorov A, Tuncali K, Fennessy FM, Wells WM, Tempany CM, Cormack RA. A Bayesian nonrigid registration method to enhance intraoperative target definition in image-guided prostate procedures through uncertainty characterization. Med Phys. 2012 Nov; 39(11):6858-67. PMID: 23127078; PMCID: PMC3494726.
  40. Tokuda J, Tuncali K, Iordachita I, Song SE, Fedorov A, Oguro S, Lasso A, Fennessy FM, Tempany CM, Hata N. In-bore setup and software for 3T MRI-guided transperineal prostate biopsy. Phys Med Biol. 2012 Sep 21; 57(18):5823-40. PMID: 22951350; PMCID: PMC3517895.
  41. Fennessy FM, Fedorov A, Gupta SN, Schmidt EJ, Tempany CM, Mulkern RV. Practical considerations in T1 mapping of prostate for dynamic contrast enhancement pharmacokinetic analyses. Magn Reson Imaging. 2012 Nov; 30(9):1224-33. PMID: 22898681; PMCID: PMC3466364.
  42. Fedorov A, Beichel R, Kalpathy-Cramer J, Finet J, Fillion-Robin JC, Pujol S, Bauer C, Jennings D, Fennessy F, Sonka M, Buatti J, Aylward S, Miller JV, Pieper S, Kikinis R. 3D Slicer as an image computing platform for the Quantitative Imaging Network. Magn Reson Imaging. 2012 Nov; 30(9):1323-41. PMID: 22770690; PMCID: PMC3466397.
  43. Levy MA, Freymann JB, Kirby JS, Fedorov A, Fennessy FM, Eschrich SA, Berglund AE, Fenstermacher DA, Tan Y, Guo X, Casavant TL, Brown BJ, Braun TA, Dekker A, Roelofs E, Mountz JM, Boada F, Laymon C, Oborski M, Rubin DL. Informatics methods to enable sharing of quantitative imaging research data. Magn Reson Imaging. 2012 Nov; 30(9):1249-56. PMID: 22770688; PMCID: PMC3466343.
  44. Fedorov A, Tuncali K, Fennessy FM, Tokuda J, Hata N, Wells WM, Kikinis R, Tempany CM. Image registration for targeted MRI-guided transperineal prostate biopsy. J Magn Reson Imaging. 2012 Oct; 36(4):987-92. PMID: 22645031; PMCID: PMC3434292.
  45. Risholm P, Janoos F, Pursley J, Fedorov A, Tempany C, Cormack RA, Wells WM. Selection of optimal hyper-parameters for estimation of uncertainty in MRI-TRUS registration of the prostate. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):107-14. PMID: 23286120; PMCID: PMC3712120.
  46. Moradi M, Janoos F, Fedorov A, Risholm P, Kapur T, Wolfsberger LD, Nguyen PL, Tempany CM, Wells WM. Two solutions for registration of ultrasound to MRI for image-guided prostate interventions. Conf Proc IEEE Eng Med Biol Soc. 2012; 2012:1129-32. PMID: 23366095; PMCID: PMC3655766.
  47. Fedorov A, Li X, Pohl KM, Bouix S, Styner M, Addicott M, Wyatt C, Daunais JB, Wells WM, Kikinis R. Atlas-guided segmentation of vervet monkey brain MRI. Open Neuroimag J. 2011; 5:186-97. PMID: 22253661.
    View in: PubMed
  48. Risholm P, Fedorov A, Pursley J, Tuncali K, Cormack R, Wells WM. PROBABILISTIC NON-RIGID REGISTRATION OF PROSTATE IMAGES: MODELING AND QUANTIFYING UNCERTAINTY. Proc IEEE Int Symp Biomed Imaging. 2011 Jun 09; 2011:553-556. PMID: 22288004.
    View in: PubMed
  49. Pohl KM, Konukoglu E, Novellas S, Ayache N, Fedorov A, Talos IF, Golby A, Wells WM, Kikinis R, Black PM. A new metric for detecting change in slowly evolving brain tumors: validation in meningioma patients. Neurosurgery. 2011 Mar; 68(1 Suppl Operative):225-33. PMID: 21206318; PMCID: PMC3099129.
  50. Archip N, Clatz O, Whalen S, Kacher D, Fedorov A, Kot A, Chrisochoides N, Jolesz F, Golby A, Black PM, Warfield SK. Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery. Neuroimage. 2007 Apr 01; 35(2):609-24. PMID: 17289403; PMCID: PMC3358788.
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Funded by the NIH/NCATS Clinical and Translational Science Award (CTSA) program, grant number UL1TR001102, and through institutional support from Harvard University, Harvard Medical School, Harvard T.H. Chan School of Public Health, Beth Israel Deaconess Medical Center, Boston Children's Hospital, Brigham and Women's Hospital, Massachusetts General Hospital and the Dana Farber Cancer Institute.