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Benoit Scherrer, Ph.D.

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Biography
2005 - 2008
National Ph.D. Grant
2008
Young Investigator Best Paper Award
2009
Best PhD Thesis in Applied Mathematics
2011
Trainee Abstract Award
2012
Best Student Paper Award (co-author)
2012
Magna Cum Laude Merit Award
2012
Magna Cum Laude Merit Award
2012
Elsevier/MEDIA-MICCAI’12 Best Paper Award

Research
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. (Benoit Scherrer) Feb 1, 2017 - Jan 31, 2019
    Translational Research Program, Innovator Grant (Internal)
    In-vivo assessment of the temporal window of vulnerability in mild traumatic brain injury (mTBI)
    Role Description: To test and validate novel magnetic resonance imaging (MRI) protocols and analysis techniques with the aim of non-invasively characterizing the temporal window of vulnerability following mild traumatic brain injury (mTBI).
    Role: PI
  2. (Benoit Scherrer) Aug 1, 2015 - Aug 30, 2016
    CTREC (BCH, Internal)
    K-to-R Bridge Merit Award : Accelerated diffusion MR imaging of brain tissue compartments
    Role Description: The objective of this award is to support young investigators of significant promise who have not yet secured NIH R01 funding
    Role: PI
  3. (Benoit Scherrer) Apr 1, 2015 - Sep 30, 2016
    TRP (BCH, Internal)
    Toward in vivo neuroimaging biomarkers of concussion : Evaluation with a mouse model of repetitive mild traumatic brain injury (rmTBI)
    Role Description: The overall objective is to test and validate the ability of diffusion compartment imaging (DCI) and magnetic resonance spectroscopy (MRS) to provide early insight into the cascade of biological mechanisms after mTBI
    Role: PI

Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Ning L, Bonet-Carne E, Grussu F, Sepehrband F, Kaden E, Veraart J, Blumberg SB, Khoo CS, Palombo M, Kokkinos I, Alexander DC, Coll-Font J, Scherrer B, Warfield SK, Karayumak SC, Rathi Y, Koppers S, Weninger L, Ebert J, Merhof D, Moyer D, Pietsch M, Christiaens D, Gomes Teixeira RA, Tournier JD, Schilling KG, Huo Y, Nath V, Hansen C, Blaber J, Landman BA, Zhylka A, Pluim JPW, Parker G, Rudrapatna U, Evans J, Charron C, Jones DK, Tax CMW. Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results. Neuroimage. 2020 Jul 13; 221:117128. PMID: 32673745.
    Citations:    
  2. Campanale CM, Scherrer B, Afacan O, Majeed A, Warfield SK, Sanders SP. Myofiber organization in the failing systemic right ventricle. J Cardiovasc Magn Reson. 2020 06 29; 22(1):49. PMID: 32600420.
    Citations:    
  3. Taquet M, Smith SM, Prohl AK, Peters JM, Warfield SK, Scherrer B, Harrison PJ. A structural brain network of genetic vulnerability to psychiatric illness. Mol Psychiatry. 2020 May 06. PMID: 32372008.
    Citations:    
  4. Scherrer B, Prohl AK, Taquet M, Kapur K, Peters JM, Tomas-Fernandez X, Davis PE, M Bebin E, Krueger DA, Northrup H, Y Wu J, Sahin M, Warfield SK. The Connectivity Fingerprint of the Fusiform Gyrus Captures the Risk of Developing Autism in Infants with Tuberous Sclerosis Complex. Cereb Cortex. 2020 Apr 14; 30(4):2199-2214. PMID: 31812987.
    Citations:    
  5. Bassell J, Srivastava S, Prohl AK, Scherrer B, Kapur K, Filip-Dhima R, Berry-Kravis E, Soorya L, Thurm A, Powell CM, Bernstein JA, Buxbaum JD, Kolevzon A, Warfield SK, Sahin M. Diffusion Tensor Imaging Abnormalities in the Uncinate Fasciculus and Inferior Longitudinal Fasciculus in Phelan-McDermid Syndrome. Pediatr Neurol. 2020 05; 106:24-31. PMID: 32107139.
    Citations:    
  6. Peters JM, Hyde DE, Chu CJ, Boom M, Scherrer B, Madsen JR, Stone SS, Ouaalam H, Prabhu SP, Sahin M, Warfield SK. Lesion-Constrained Electrical Source Imaging: A Novel Approach in Epilepsy Surgery for Tuberous Sclerosis Complex. J Clin Neurophysiol. 2020 Jan; 37(1):79-86. PMID: 31261349.
    Citations:    
  7. Prohl AK, Scherrer B, Tomas-Fernandez X, Davis PE, Filip-Dhima R, Prabhu SP, Peters JM, Bebin EM, Krueger DA, Northrup H, Wu JY, Sahin M, Warfield SK. Early white matter development is abnormal in tuberous sclerosis complex patients who develop autism spectrum disorder. J Neurodev Disord. 2019 12 16; 11(1):36. PMID: 31838998.
    Citations:    
  8. Narvaez-Delgado O, Rojas-Vite G, Coronado-Leija R, Ramírez-Manzanares A, Marroquín JL, Noguez-Imm R, Aranda ML, Scherrer B, Larriva-Sahd J, Concha L. Histological and diffusion-weighted magnetic resonance imaging data from normal and degenerated optic nerve and chiasm of the rat. Data Brief. 2019 Oct; 26:104399. PMID: 31516943.
    Citations:    
  9. Rojas-Vite G, Coronado-Leija R, Narvaez-Delgado O, Ramírez-Manzanares A, Marroquín JL, Noguez-Imm R, Aranda ML, Scherrer B, Larriva-Sahd J, Concha L. Histological validation of per-bundle water diffusion metrics within a region of fiber crossing following axonal degeneration. Neuroimage. 2019 11 01; 201:116013. PMID: 31326575.
    Citations:    
  10. Prohl AK, Scherrer B, Tomas-Fernandez X, Filip-Dhima R, Kapur K, Velasco-Annis C, Clancy S, Carmody E, Dean M, Valle M, Prabhu SP, Peters JM, Bebin EM, Krueger DA, Northrup H, Wu JY, Sahin M, Warfield SK. Reproducibility of Structural and Diffusion Tensor Imaging in the TACERN Multi-Center Study. Front Integr Neurosci. 2019; 13:24. PMID: 31417372.
    Citations:    
  11. Peters JM, Struyven RR, Prohl AK, Vasung L, Stajduhar A, Taquet M, Bushman JJ, Lidov H, Singh JM, Scherrer B, Madsen JR, Prabhu SP, Sahin M, Afacan O, Warfield SK. White matter mean diffusivity correlates with myelination in tuberous sclerosis complex. Ann Clin Transl Neurol. 2019 07; 6(7):1178-1190. PMID: 31353853.
    Citations:    
  12. Marami B, Scherrer B, Khan S, Afacan O, Prabhu SP, Sahin M, Warfield SK, Gholipour A. Motion-robust diffusion compartment imaging using simultaneous multi-slice acquisition. Magn Reson Med. 2019 05; 81(5):3314-3329. PMID: 30443929.
    Citations:    Fields:    
  13. Peters JM, Prohl A, Kapur K, Nath A, Scherrer B, Clancy S, Prabhu SP, Sahin M, Franz DN, Warfield SK, Krueger DA. Longitudinal Effects of Everolimus on White Matter Diffusion in Tuberous Sclerosis Complex. Pediatr Neurol. 2019 01; 90:24-30. PMID: 30424962.
    Citations:    Fields:    
  14. Baumer FM, Peters JM, Clancy S, Prohl AK, Prabhu SP, Scherrer B, Jansen FE, Braun KPJ, Sahin M, Stamm A, Warfield SK. Corpus Callosum White Matter Diffusivity Reflects Cumulative Neurological Comorbidity in Tuberous Sclerosis Complex. Cereb Cortex. 2018 10 01; 28(10):3665-3672. PMID: 29939236.
    Citations:    Fields:    
  15. Srivastava S, Scherrer B, Prohl AK, Filip-Dhima R, Kapur K, Kolevzon A, Buxbaum JD, Berry-Kravis E, Soorya L, Thurm A, Powell CM, Bernstein JA, Warfield SK, Sahin M. Volumetric Analysis of the Basal Ganglia and Cerebellar Structures in Patients with Phelan-McDermid Syndrome. Pediatr Neurol. 2019 01; 90:37-43. PMID: 30396833.
    Citations:    Fields:    
  16. Srivastava S, Prohl AK, Scherrer B, Kapur K, Krueger DA, Warfield SK, Sahin M. Cerebellar volume as an imaging marker of development in infants with tuberous sclerosis complex. Neurology. 2018 04 24; 90(17):e1493-e1500. PMID: 29572283.
    Citations:    Fields:    
  17. MacDougall RD, Scherrer B, Don S. Development of a tool to aid the radiologic technologist using augmented reality and computer vision. Pediatr Radiol. 2018 01; 48(1):141-145. PMID: 28866805.
    Citations:    Fields:    Translation:Humans
  18. Eaton-Rosen Z, Scherrer B, Melbourne A, Ourselin S, Neil JJ, Warfield SK. Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI. Neuroimage. 2017 11 15; 162:65-72. PMID: 28801253.
    Citations: 1     Fields:    Translation:Humans
  19. Ferizi U, Scherrer B, Schneider T, Alipoor M, Eufracio O, Fick RHJ, Deriche R, Nilsson M, Loya-Olivas AK, Rivera M, Poot DHJ, Ramirez-Manzanares A, Marroquin JL, Rokem A, Pötter C, Dougherty RF, Sakaie K, Wheeler-Kingshott C, Warfield SK, Witzel T, Wald LL, Raya JG, Alexander DC. Diffusion MRI microstructure models with in vivo human brain Connectome data: results from a multi-group comparison. NMR Biomed. 2017 Sep; 30(9). PMID: 28643354.
    Citations: 2     Fields:    Translation:Humans
  20. Marami B, Mohseni Salehi SS, Afacan O, Scherrer B, Rollins CK, Yang E, Estroff JA, Warfield SK, Gholipour A. Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis. Neuroimage. 2017 08 01; 156:475-488. PMID: 28433624.
    Citations: 4     Fields:    Translation:Humans
  21. Hedouin R, Commowick O, Bannier E, Scherrer B, Taquet M, Warfield SK, Barillot C. Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions. IEEE Trans Med Imaging. 2017 05; 36(5):1106-1115. PMID: 28092527.
    Citations: 1     Fields:    Translation:Humans
  22. Marami B, Scherrer B, Afacan O, Warfield SK, Gholipour A. Motion-Robust Reconstruction based on Simultaneous Multi-Slice Registration for Diffusion-Weighted MRI of Moving Subjects. Med Image Comput Comput Assist Interv. 2016 Oct; 9902:544-552. PMID: 28127590.
    Citations: 2     Fields:    Translation:Humans
  23. Marami B, Scherrer B, Afacan O, Erem B, Warfield SK, Gholipour A. Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking. IEEE Trans Med Imaging. 2016 10; 35(10):2258-2269. PMID: 27834639.
    Citations: 4     Fields:    Translation:Humans
  24. Chamberland M, Scherrer B, Prabhu SP, Madsen J, Fortin D, Whittingstall K, Descoteaux M, Warfield SK. Active delineation of Meyer's loop using oriented priors through MAGNEtic tractography (MAGNET). Hum Brain Mapp. 2017 01; 38(1):509-527. PMID: 27647682.
    Citations: 4     Fields:    Translation:HumansCells
  25. Marami B, Scherrer B, Afacan O, Erem B, Warfield S, Gholipour A. Motion-robust diffusion-weighted brain MRI reconstruction through slice-level registration-based motion tracking. IEEE Trans Med Imaging. 2016 Apr 20. PMID: 28113889.
    Citations:    
  26. Gholipour A, Afacan O, Aganj I, Scherrer B, Prabhu SP, Sahin M, Warfield SK. Super-resolution reconstruction in frequency, image, and wavelet domains to reduce through-plane partial voluming in MRI. Med Phys. 2015 Dec; 42(12):6919-32. PMID: 26632048.
    Citations: 2     Fields:    Translation:Humans
  27. Taquet M, Scherrer B, Boumal N, Peters JM, Macq B, Warfield SK. Improved fidelity of brain microstructure mapping from single-shell diffusion MRI. Med Image Anal. 2015 Dec; 26(1):268-86. PMID: 26529580.
    Citations: 2     Fields:    Translation:Humans
  28. Peters JM, Prohl AK, Tomas-Fernandez XK, Taquet M, Scherrer B, Prabhu SP, Lidov HG, Singh JM, Jansen FE, Braun KP, Sahin M, Warfield SK, Stamm A. Tubers are neither static nor discrete: Evidence from serial diffusion tensor imaging. Neurology. 2015 Nov 03; 85(18):1536-45. PMID: 26432846.
    Citations: 4     Fields:    Translation:Humans
  29. Scherrer B, Schwartzman A, Taquet M, Sahin M, Prabhu SP, Warfield SK. Characterizing brain tissue by assessment of the distribution of anisotropic microstructural environments in diffusion-compartment imaging (DIAMOND). Magn Reson Med. 2016 09; 76(3):963-77. PMID: 26362832.
    Citations: 11     Fields:    Translation:HumansAnimals
  30. Scherrer B, Afacan O, Taquet M, Prabhu SP, Gholipour A, Warfield SK. Accelerated High Spatial Resolution Diffusion-Weighted Imaging. Inf Process Med Imaging. 2015; 24:69-81. PMID: 26167096.
    Citations: 2     Fields:    Translation:Humans
  31. Taquet M, Scherrer B, Peters JM, Prabhu SP, Warfield SK. A fully Bayesian inference framework for population studies of the brain microstructure. Med Image Comput Comput Assist Interv. 2014; 17(Pt 1):25-32. PMID: 25333097.
    Citations: 2     Fields:    Translation:HumansCells
  32. Taquet M, Scherrer B, Commowick O, Peters JM, Sahin M, Macq B, Warfield SK. A mathematical framework for the registration and analysis of multi-fascicle models for population studies of the brain microstructure. IEEE Trans Med Imaging. 2014 Feb; 33(2):504-17. PMID: 24235301.
    Citations: 11     Fields:    Translation:Humans
  33. Peters JM, Taquet M, Prohl AK, Scherrer B, van Eeghen AM, Prabhu SP, Sahin M, Warfield SK. Diffusion tensor imaging and related techniques in tuberous sclerosis complex: review and future directions. Future Neurol. 2013 Sep; 8(5):583-597. PMID: 24489482.
    Citations: 10     
  34. Hammond DK, Scherrer B, Warfield SK. Cortical graph smoothing: a novel method for exploiting DWI-derived anatomical brain connectivity to improve EEG source estimation. IEEE Trans Med Imaging. 2013 Oct; 32(10):1952-63. PMID: 23807436.
    Citations: 3     Fields:    Translation:Humans
  35. Scherrer B, Schwartzman A, Taquet M, Prabhu SP, Sahin M, Akhondi-Asl A, Warfield SK. Characterizing the distribution of anisotropic micro-structural environments with diffusion-weighted imaging (DIAMOND). Med Image Comput Comput Assist Interv. 2013; 16(Pt 3):518-26. PMID: 24505801.
    Citations: 6     Fields:    Translation:Cells
  36. Scherrer B, Taquet M, Warfield SK. Reliable selection of the number of fascicles in diffusion images by estimation of the generalization error. Inf Process Med Imaging. 2013; 23:742-53. PMID: 24684014.
    Citations: 5     Fields:    Translation:HumansCells
  37. Taquet M, Scherrer B, Boumal N, Macq B, Warfield SK. Estimation of a multi-fascicle model from single B-value data with a population-informed prior. Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):695-702. PMID: 24505728.
    Citations: 5     Fields:    Translation:Humans
  38. Scherrer B, Warfield SK. Parametric representation of multiple white matter fascicles from cube and sphere diffusion MRI. PLoS One. 2012; 7(11):e48232. PMID: 23189128.
    Citations: 22     Fields:    Translation:Humans
  39. Scherrer B, Gholipour A, Warfield SK. Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions. Med Image Anal. 2012 Oct; 16(7):1465-76. PMID: 22770597.
    Citations: 21     Fields:    Translation:HumansCells
  40. Lewis WW, Sahin M, Scherrer B, Peters JM, Suarez RO, Vogel-Farley VK, Jeste SS, Gregas MC, Prabhu SP, Nelson CA, Warfield SK. Impaired language pathways in tuberous sclerosis complex patients with autism spectrum disorders. Cereb Cortex. 2013 Jul; 23(7):1526-32. PMID: 22661408.
    Citations: 22     Fields:    Translation:HumansCells
  41. Akhondi-Asl A, Hans A, Scherrer B, Peters JM, Warfield SK. WHOLE BRAIN GROUP NETWORK ANALYSIS USING NETWORK BIAS AND VARIANCE PARAMETERS. Proc IEEE Int Symp Biomed Imaging. 2012 May; 2012:1511-1514. PMID: 26539256.
    Citations:    
  42. Scherrer B, Gholipour A, Warfield SK. Super-Resolution Reconstruction of Diffusion-Weighted Images from Distortion Compensated Orthogonal Anisotropic Acquisitions. Proc Workshop Math Methods Biomed Image Analysis. 2012 Jan; 2012:249-254. PMID: 25356442.
    Citations:    
  43. Peters JM, Sahin M, Vogel-Farley VK, Jeste SS, Nelson CA, Gregas MC, Prabhu SP, Scherrer B, Warfield SK. Loss of white matter microstructural integrity is associated with adverse neurological outcome in tuberous sclerosis complex. Acad Radiol. 2012 Jan; 19(1):17-25. PMID: 22142677.
    Citations: 43     Fields:    Translation:HumansCells
  44. Taquet M, Scherrer B, Commowick O, Peters J, Sahin M, Macq B, Warfield SK. Registration and analysis of white matter group differences with a multi-fiber model. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):313-20. PMID: 23286145.
    Citations: 7     Fields:    Translation:HumansCells
  45. Gholipour A, Kehtarnavaz N, Scherrer B, Warfield SK. On the accuracy of unwarping techniques for the correction of susceptibility-induced geometric distortion in magnetic resonance Echo-planar images. Conf Proc IEEE Eng Med Biol Soc. 2011; 2011:6997-7000. PMID: 22255949.
    Citations: 8     Fields:    Translation:Humans
  46. Scherrer B, Gholipour A, Warfield SK. Super-resolution in diffusion-weighted imaging. Med Image Comput Comput Assist Interv. 2011; 14(Pt 2):124-32. PMID: 21995021.
    Citations: 3     Fields:    Translation:HumansCells
  47. Scherrer B, Forbes F, Garbay C, Dojat M. Distributed local MRF models for tissue and structure brain segmentation. IEEE Trans Med Imaging. 2009 Aug; 28(8):1278-95. PMID: 19228553.
    Citations: 8     Fields:    Translation:Humans
  48. Scherrer B, Forbes F, Dojat M. A conditional random field approach for coupling local registration with robust tissue and structure segmentation. Med Image Comput Comput Assist Interv. 2009; 12(Pt 2):540-8. PMID: 20426154.
    Citations:    Fields:    Translation:Humans
  49. Scherrer B, Dojat M, Forbes F, Garbay C. Agentification of Markov model-based segmentation: application to magnetic resonance brain scans. Artif Intell Med. 2009 May; 46(1):81-95. PMID: 18929472.
    Citations:    Fields:    Translation:Humans
  50. Scherrer B, Forbes F, Garbay C, Dojat M. Fully Bayesian joint model for MR brain scan tissue and structure segmentation. Med Image Comput Comput Assist Interv. 2008; 11(Pt 2):1066-74. PMID: 18982710.
    Citations: 1     Fields:    Translation:Humans
  51. Scherrer B, Dojat M, Forbes F, Garbay C. LOCUS: local cooperative unified segmentation of MRI brain scans. Med Image Comput Comput Assist Interv. 2007; 10(Pt 1):219-27. PMID: 18051062.
    Citations: 1     Fields:    Translation:Humans
  52. Kabir Y, Dojat M, Scherrer B, Forbes F, Garbay C. Multimodal MRI segmentation of ischemic stroke lesions. Conf Proc IEEE Eng Med Biol Soc. 2007; 2007:1595-8. PMID: 18002276.
    Citations: 13     Fields:    Translation:Humans
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.