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Ali Gholipour-Baboli, Ph.D.

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Research
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. R01EB031849 (GHOLIPOUR-BABOLI, ALI) Jun 15, 2021 - Feb 28, 2025
    NIH
    Next-generation in-vivo fetal neuroimaging
    Role: Principal Investigator
  2. R01NS106030 (GHOLIPOUR-BABOLI, ALI) Feb 15, 2019 - Jan 31, 2024
    NIH
    Advancing microstructural and vascular neuroimaging in perinatal stroke
    Role: Principal Investigator
  3. R01EB018988 (GHOLIPOUR-BABOLI, ALI) Jul 1, 2014 - Jun 30, 2020
    NIH
    Motion-robust super-resolution diffusion weighted MRI of early brain development
    Role: Principal Investigator
  4. R03DE022109 (GHOLIPOUR-BABOLI, ALI) Jul 1, 2011 - Jun 30, 2014
    NIH
    Super-resolution Reconstruction of Fetal Craniofacial MRI
    Role: Principal Investigator

Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. van der Weijden CW, van der Hoorn A, Potze JH, Renken RJ, Borra RJ, Dierckx RA, Gutmann IW, Ouaalam H, Karimi D, Gholipour A, Warfield SK, de Vries EF, Meilof JF. Diffusion-derived parameters in lesions, peri-lesion, and normal-appearing white matter in multiple sclerosis using tensor, kurtosis, and fixel-based analysis. J Cereb Blood Flow Metab. 2022 Jun 25; 271678X221107953. PMID: 35754351.
    Citations:    Fields:    
  2. Karimi D, Gholipour A. Diffusion tensor estimation with transformer neural networks. Artif Intell Med. 2022 08; 130:102330. PMID: 35809969.
    Citations:    Fields:    Translation:Humans
  3. Sui Y, Afacan O, Jaimes C, Gholipour A, Warfield SK. Scan-Specific Generative Neural Network for MRI Super-Resolution Reconstruction. IEEE Trans Med Imaging. 2022 06; 41(6):1383-1399. PMID: 35020591; PMCID: PMC9208763.
    Citations:    Fields:    Translation:Humans
  4. Maffei C, Girard G, Schilling KG, Aydogan DB, Adluru N, Zhylka A, Wu Y, Mancini M, Hamamci A, Sarica A, Teillac A, Baete SH, Karimi D, Yeh FC, Yildiz ME, Gholipour A, Bihan-Poudec Y, Hiba B, Quattrone A, Quattrone A, Boshkovski T, Stikov N, Yap PT, de Luca A, Pluim J, Leemans A, Prabhakaran V, Bendlin BB, Alexander AL, Landman BA, Canales-Rodríguez EJ, Barakovic M, Rafael-Patino J, Yu T, Rensonnet G, Schiavi S, Daducci A, Pizzolato M, Fischi-Gomez E, Thiran JP, Dai G, Grisot G, Lazovski N, Puch S, Ramos M, Rodrigues P, Prckovska V, Jones R, Lehman J, Haber SN, Yendiki A. Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. Neuroimage. 2022 08 15; 257:119327. PMID: 35636227; PMCID: PMC9453851.
    Citations:    Fields:    Translation:HumansCells
  5. Bethlehem RAI, Seidlitz J, White SR, Vogel JW, Anderson KM, Adamson C, Adler S, Alexopoulos GS, Anagnostou E, Areces-Gonzalez A, Astle DE, Auyeung B, Ayub M, Bae J, Ball G, Baron-Cohen S, Beare R, Bedford SA, Benegal V, Beyer F, Blangero J, Blesa Cábez M, Boardman JP, Borzage M, Bosch-Bayard JF, Bourke N, Calhoun VD, Chakravarty MM, Chen C, Chertavian C, Chetelat G, Chong YS, Cole JH, Corvin A, Costantino M, Courchesne E, Crivello F, Cropley VL, Crosbie J, Crossley N, Delarue M, Delorme R, Desrivieres S, Devenyi GA, Di Biase MA, Dolan R, Donald KA, Donohoe G, Dunlop K, Edwards AD, Elison JT, Ellis CT, Elman JA, Eyler L, Fair DA, Feczko E, Fletcher PC, Fonagy P, Franz CE, Galan-Garcia L, Gholipour A, Giedd J, Gilmore JH, Glahn DC, Goodyer IM, Grant PE, Groenewold NA, Gunning FM, Gur RE, Gur RC, Hammill CF, Hansson O, Hedden T, Heinz A, Henson RN, Heuer K, Hoare J, Holla B, Holmes AJ, Holt R, Huang H, Im K, Ipser J, Jack CR, Jackowski AP, Jia T, Johnson KA, Jones PB, Jones DT, Kahn RS, Karlsson H, Karlsson L, Kawashima R, Kelley EA, Kern S, Kim KW, Kitzbichler MG, Kremen WS, Lalonde F, Landeau B, Lee S, Lerch J, Lewis JD, Li J, Liao W, Liston C, Lombardo MV, Lv J, Lynch C, Mallard TT, Marcelis M, Markello RD, Mathias SR, Mazoyer B, McGuire P, Meaney MJ, Mechelli A, Medic N, Misic B, Morgan SE, Mothersill D, Nigg J, Ong MQW, Ortinau C, Ossenkoppele R, Ouyang M, Palaniyappan L, Paly L, Pan PM, Pantelis C, Park MM, Paus T, Pausova Z, Paz-Linares D, Pichet Binette A, Pierce K, Qian X, Qiu J, Qiu A, Raznahan A, Rittman T, Rodrigue A, Rollins CK, Romero-Garcia R, Ronan L, Rosenberg MD, Rowitch DH, Salum GA, Satterthwaite TD, Schaare HL, Schachar RJ, Schultz AP, Schumann G, Schöll M, Sharp D, Shinohara RT, Skoog I, Smyser CD, Sperling RA, Stein DJ, Stolicyn A, Suckling J, Sullivan G, Taki Y, Thyreau B, Toro R, Traut N, Tsvetanov KA, Turk-Browne NB, Tuulari JJ, Tzourio C, Vachon-Presseau É, Valdes-Sosa MJ, Valdes-Sosa PA, Valk SL, van Amelsvoort T, Vandekar SN, Vasung L, Victoria LW, Villeneuve S, Villringer A, Vértes PE, Wagstyl K, Wang YS, Warfield SK, Warrier V, Westman E, Westwater ML, Whalley HC, Witte AV, Yang N, Yeo B, Yun H, Zalesky A, Zar HJ, Zettergren A, Zhou JH, Ziauddeen H, Zugman A, Zuo XN, Bullmore ET, Alexander-Bloch AF. Brain charts for the human lifespan. Nature. 2022 04; 604(7906):525-533. PMID: 35388223; PMCID: PMC9021021.
    Citations: 10     Fields:    Translation:Humans
  6. Vasung L, Rollins CK, Zhang J, Velasco-Annis C, Yang E, Lin I, Sutin J, Warfield SK, Soul J, Estroff J, Connolly S, Barnewolt C, Gholipour A, Feldman HA, Grant PE. Abnormal development of transient fetal zones in mild isolated fetal ventriculomegaly. Cereb Cortex. 2022 Mar 29. PMID: 35349640.
    Citations:    Fields:    
  7. Karimi D, Dou H, Gholipour A. Medical Image Segmentation Using Transformer Networks. IEEE Access. 2022; 10:29322-29332. PMID: 35656515; PMCID: PMC9159704.
    Citations:    
  8. Sadhwani A, Wypij D, Rofeberg V, Gholipour A, Mittleman M, Rohde J, Velasco-Annis C, Calderon J, Friedman KG, Tworetzky W, Grant PE, Soul JS, Warfield SK, Newburger JW, Ortinau CM, Rollins CK. Fetal Brain Volume Predicts Neurodevelopment in Congenital Heart Disease. Circulation. 2022 04 12; 145(15):1108-1119. PMID: 35143287; PMCID: PMC9007882.
    Citations: 1     Fields:    Translation:Humans
  9. Balachandrasekaran A, Cohen AL, Afacan O, Warfield SK, Gholipour A. Reducing the Effects of Motion Artifacts in fMRI: A Structured Matrix Completion Approach. IEEE Trans Med Imaging. 2022 01; 41(1):172-185. PMID: 34432631; PMCID: PMC8934405.
    Citations:    Fields:    
  10. Machado-Rivas F, Gandhi J, Choi JJ, Velasco-Annis C, Afacan O, Warfield SK, Gholipour A, Jaimes C. Normal Growth, Sexual Dimorphism, and Lateral Asymmetries at Fetal Brain MRI. Radiology. 2022 04; 303(1):162-170. PMID: 34931857; PMCID: PMC8962825.
    Citations:    Fields:    Translation:Humans
  11. Balagurunathan Y, Beers A, Mcnitt-Gray M, Hadjiiski L, Napel S, Goldgof D, Perez G, Arbelaez P, Mehrtash A, Kapur T, Yang E, Moon JW, Perez GB, Delgado-Gonzalo R, Farhangi MM, Amini AA, Ni R, Feng X, Bagari A, Vaidhya K, Veasey B, Safta W, Frigui H, Enguehard J, Gholipour A, Castillo LS, Daza LA, Pinsky P, Kalpathy-Cramer J, Farahani K. Lung Nodule Malignancy Prediction in Sequential CT Scans: Summary of ISBI 2018 Challenge. IEEE Trans Med Imaging. 2021 12; 40(12):3748-3761. PMID: 34264825.
    Citations: 2     Fields:    Translation:Humans
  12. Sui Y, Afacan O, Jaimes C, Gholipour A, Warfield SK. Gradient-Guided Isotropic MRI Reconstruction from Anisotropic Acquisitions. IEEE Trans Comput Imaging. 2021; 7:1240-1253. PMID: 35252479; PMCID: PMC8896514.
    Citations: 1     
  13. Sui Y, Afacan O, Gholipour A, Warfield SK. MRI Super-Resolution Through Generative Degradation Learning. Med Image Comput Comput Assist Interv. 2021 Sep-Oct; 12906:430-440. PMID: 34713277; PMCID: PMC8550564.
    Citations: 2     Fields:    
  14. Machado-Rivas F, Afacan O, Khan S, Marami B, Velasco-Annis C, Lidov H, Warfield SK, Gholipour A, Jaimes C. Spatiotemporal changes in diffusivity and anisotropy in fetal brain tractography. Hum Brain Mapp. 2021 12 01; 42(17):5771-5784. PMID: 34487404; PMCID: PMC8559496.
    Citations: 1     Fields:    Translation:Humans
  15. Karimi D, Jaimes C, Machado-Rivas F, Vasung L, Khan S, Warfield SK, Gholipour A. Deep learning-based parameter estimation in fetal diffusion-weighted MRI. Neuroimage. 2021 11; 243:118482. PMID: 34455242; PMCID: PMC8573718.
    Citations: 1     Fields:    Translation:Humans
  16. Wang L, Du J, Gholipour A, Zhu H, He Z, Jia Y. 3D dense convolutional neural network for fast and accurate single MR image super-resolution. Comput Med Imaging Graph. 2021 10; 93:101973. PMID: 34543775.
    Citations:    
  17. Vasung L, Zhao C, Barkovich M, Rollins CK, Zhang J, Lepage C, Corcoran T, Velasco-Annis C, Yun HJ, Im K, Warfield SK, Evans AC, Huang H, Gholipour A, Grant PE. Association between Quantitative MR Markers of Cortical Evolving Organization and Gene Expression during Human Prenatal Brain Development. Cereb Cortex. 2021 07 05; 31(8):3610-3621. PMID: 33836056; PMCID: PMC8258434.
    Citations: 2     Fields:    Translation:HumansCells
  18. Karimi D, Vasung L, Jaimes C, Machado-Rivas F, Warfield SK, Gholipour A. Learning to estimate the fiber orientation distribution function from diffusion-weighted MRI. Neuroimage. 2021 10 01; 239:118316. PMID: 34182101; PMCID: PMC8385546.
    Citations: 1     Fields:    Translation:HumansCells
  19. Sui Y, Afacan O, Gholipour A, Warfield SK. Fast and High-Resolution Neonatal Brain MRI Through Super-Resolution Reconstruction From Acquisitions With Variable Slice Selection Direction. Front Neurosci. 2021; 15:636268. PMID: 34220414.
    Citations: 4     
  20. Karimi D, Vasung L, Jaimes C, Machado-Rivas F, Khan S, Warfield SK, Gholipour A. A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging. Med Image Anal. 2021 08; 72:102129. PMID: 34182203; PMCID: PMC8320341.
    Citations: 1     Fields:    Translation:Humans
  21. Karimi D, Warfield SK, Gholipour A. Transfer learning in medical image segmentation: New insights from analysis of the dynamics of model parameters and learned representations. Artif Intell Med. 2021 06; 116:102078. PMID: 34020754; PMCID: PMC8164174.
    Citations: 8     Fields:    Translation:Humans
  22. Dou H, Karimi D, Rollins CK, Ortinau CM, Vasung L, Velasco-Annis C, Ouaalam A, Yang X, Ni D, Gholipour A. A Deep Attentive Convolutional Neural Network for Automatic Cortical Plate Segmentation in Fetal MRI. IEEE Trans Med Imaging. 2021 04; 40(4):1123-1133. PMID: 33351755; PMCID: PMC8016740.
    Citations: 2     Fields:    
  23. Cohen AL, Mulder BPF, Prohl AK, Soussand L, Davis P, Kroeck MR, McManus P, Gholipour A, Scherrer B, Bebin EM, Wu JY, Northrup H, Krueger DA, Sahin M, Warfield SK, Fox MD, Peters JM. Tuber Locations Associated with Infantile Spasms Map to a Common Brain Network. Ann Neurol. 2021 04; 89(4):726-739. PMID: 33410532; PMCID: PMC7969435.
    Citations: 3     Fields:    Translation:Humans
  24. Machado-Rivas F, Afacan O, Khan S, Marami B, Rollins CK, Ortinau C, Velasco-Annis C, Warfield SK, Gholipour A, Jaimes C. Tractography of the Cerebellar Peduncles in Second- and Third-Trimester Fetuses. AJNR Am J Neuroradiol. 2021 01; 42(1):194-200. PMID: 33431505.
    Citations: 1     Fields:    Translation:Humans
  25. Coll-Font J, Afacan O, Hoge S, Garg H, Shashi K, Marami B, Gholipour A, Chow J, Warfield S, Kurugol S. Retrospective Distortion and Motion Correction for Free-Breathing DW-MRI of the Kidneys Using Dual-Echo EPI and Slice-to-Volume Registration. J Magn Reson Imaging. 2021 05; 53(5):1432-1443. PMID: 33382173; PMCID: PMC8046730.
    Citations: 1     Fields:    Translation:Humans
  26. Rollins CK, Ortinau CM, Stopp C, Friedman KG, Tworetzky W, Gagoski B, Velasco-Annis C, Afacan O, Vasung L, Beaute JI, Rofeberg V, Estroff JA, Grant PE, Soul JS, Yang E, Wypij D, Gholipour A, Warfield SK, Newburger JW. Regional Brain Growth Trajectories in Fetuses with Congenital Heart Disease. Ann Neurol. 2021 01; 89(1):143-157. PMID: 33084086.
    Citations: 8     Fields:    Translation:Humans
  27. Singh A, Salehi SSM, Gholipour A. Deep Predictive Motion Tracking in Magnetic Resonance Imaging: Application to Fetal Imaging. IEEE Trans Med Imaging. 2020 11; 39(11):3523-3534. PMID: 32746102.
    Citations: 2     Fields:    Translation:Humans
  28. Sui Y, Afacan O, Gholipour A, Warfield SK. Learning a Gradient Guidance for Spatially Isotropic MRI Super-Resolution Reconstruction. Med Image Comput Comput Assist Interv. 2020 Oct; 12262:136-146. PMID: 33163994; PMCID: PMC7643753.
    Citations: 4     Fields:    
  29. Sui Y, Afacan O, Gholipour A, Warfield SK. SLIMM: Slice localization integrated MRI monitoring. Neuroimage. 2020 12; 223:117280. PMID: 32853815.
    Citations: 4     Fields:    Translation:Humans
  30. Jaimes C, Rofeberg V, Stopp C, Ortinau CM, Gholipour A, Friedman KG, Tworetzky W, Estroff J, Newburger JW, Wypij D, Warfield SK, Yang E, Rollins CK. Association of Isolated Congenital Heart Disease with Fetal Brain Maturation. AJNR Am J Neuroradiol. 2020 08; 41(8):1525-1531. PMID: 32646947.
    Citations: 5     Fields:    Translation:Humans
  31. Vasung L, Rollins CK, Velasco-Annis C, Yun HJ, Zhang J, Warfield SK, Feldman HA, Gholipour A, Grant PE. Spatiotemporal Differences in the Regional Cortical Plate and Subplate Volume Growth during Fetal Development. Cereb Cortex. 2020 06 30; 30(8):4438-4453. PMID: 32147720.
    Citations: 6     Fields:    Translation:Humans
  32. Karimi D, Dou H, Warfield SK, Gholipour A. Deep learning with noisy labels: Exploring techniques and remedies in medical image analysis. Med Image Anal. 2020 10; 65:101759. PMID: 32623277.
    Citations: 32     Fields:    Translation:Humans
  33. Karimi D, Peters JM, Ouaalam A, Prabhu SP, Sahin M, Krueger DA, Kolevzon A, Eng C, Warfield SK, Gholipour A. LEARNING TO DETECT BRAIN LESIONS FROM NOISY ANNOTATIONS. Proc IEEE Int Symp Biomed Imaging. 2020 Apr; 2020:1910-1914. PMID: 32879655.
    Citations: 2     
  34. Jaimes C, Machado-Rivas F, Afacan O, Khan S, Marami B, Ortinau CM, Rollins CK, Velasco-Annis C, Warfield SK, Gholipour A. In vivo characterization of emerging white matter microstructure in the fetal brain in the third trimester. Hum Brain Mapp. 2020 08 15; 41(12):3177-3185. PMID: 32374063.
    Citations: 5     Fields:    Translation:Humans
  35. Afacan O, Hoge WS, Wallace TE, Gholipour A, Kurugol S, Warfield SK. Simultaneous Motion and Distortion Correction Using Dual-Echo Diffusion-Weighted MRI. J Neuroimaging. 2020 05; 30(3):276-285. PMID: 32374453.
    Citations: 4     Fields:    Translation:Humans
  36. Vasung L, Rollins CK, Yun HJ, Velasco-Annis C, Zhang J, Wagstyl K, Evans A, Warfield SK, Feldman HA, Grant PE, Gholipour A. Quantitative In vivo MRI Assessment of Structural Asymmetries and Sexual Dimorphism of Transient Fetal Compartments in the Human Brain. Cereb Cortex. 2020 03 14; 30(3):1752-1767. PMID: 31602456.
    Citations: 13     Fields:    Translation:Humans
  37. Gholipour A, Warfield SK. Motion-corrected foetal cardiac MRI. Nat Biomed Eng. 2019 11; 3(11):852-854. PMID: 31645682.
    Citations:    Fields:    Translation:Humans
  38. Sui Y, Afacan O, Gholipour A, Warfield SK. Isotropic MRI Super-Resolution Reconstruction with Multi-scale Gradient Field Prior. Med Image Comput Comput Assist Interv. 2019 Oct; 11766:3-11. PMID: 32832937.
    Citations: 7     Fields:    
  39. Afacan O, Estroff JA, Yang E, Barnewolt CE, Connolly SA, Parad RB, Mulkern RV, Warfield SK, Gholipour A. Fetal Echoplanar Imaging: Promises and Challenges. Top Magn Reson Imaging. 2019 Oct; 28(5):245-254. PMID: 31592991.
    Citations: 4     Fields:    Translation:Humans
  40. Ortinau CM, Rollins CK, Gholipour A, Yun HJ, Marshall M, Gagoski B, Afacan O, Friedman K, Tworetzky W, Warfield SK, Newburger JW, Inder TE, Grant PE, Im K. Early-Emerging Sulcal Patterns Are Atypical in Fetuses with Congenital Heart Disease. Cereb Cortex. 2019 07 22; 29(8):3605-3616. PMID: 30272144.
    Citations: 20     Fields:    Translation:Humans
  41. Sourati J, Gholipour A, Dy JG, Tomas-Fernandez X, Kurugol S, Warfield SK. Intelligent Labeling Based on Fisher Information for Medical Image Segmentation Using Deep Learning. IEEE Trans Med Imaging. 2019 11; 38(11):2642-2653. PMID: 30932833.
    Citations: 2     Fields:    Translation:Humans
  42. Enguehard J, O'Halloran P, Gholipour A. Semi Supervised Learning with Deep Embedded Clustering for Image Classification and Segmentation. IEEE Access. 2019; 7:11093-11104. PMID: 31588387; PMCID: PMC6777718.
    Citations: 3     
  43. Hashemi SR, Salehi SSM, Erdogmus D, Prabhu SP, Warfield SK, Gholipour A. Asymmetric Loss Functions and Deep Densely Connected Networks for Highly Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection. IEEE Access. 2019; 7:721-1735. PMID: 31528523; PMCID: PMC6746414.
    Citations: 16     
  44. Marami B, Scherrer B, Khan S, Afacan O, Prabhu SP, Sahin M, Warfield SK, Gholipour A. Motion-robust diffusion compartment imaging using simultaneous multi-slice acquisition. Magn Reson Med. 2019 05; 81(5):3314-3329. PMID: 30443929; PMCID: PMC6414287.
    Citations: 3     Fields:    Translation:Humans
  45. Ortinau CM, Mangin-Heimos K, Moen J, Alexopoulos D, Inder TE, Gholipour A, Shimony JS, Eghtesady P, Schlaggar BL, Smyser CD. Prenatal to postnatal trajectory of brain growth in complex congenital heart disease. Neuroimage Clin. 2018; 20:913-922. PMID: 30308377.
    Citations: 11     Fields:    Translation:Humans
  46. Sourati J, Gholipour A, Dy JG, Kurugol S, Warfield SK. Active Deep Learning with Fisher Information for Patch-wise Semantic Segmentation. Deep Learn Med Image Anal Multimodal Learn Clin Decis Support (2018). 2018 Sep; 11045:83-91. PMID: 30450490; PMCID: PMC6235453.
    Citations: 8     
  47. Khan S, Rollins CK, Ortinau CM, Afacan O, Warfield SK, Gholipour A. Tract-Specific Group Analysis in Fetal Cohorts Using in utero Diffusion Tensor Imaging. Med Image Comput Comput Assist Interv. 2018 Sep; 11072:28-35. PMID: 32869014.
    Citations: 2     Fields:    
  48. Khan S, Vasung L, Marami B, Rollins CK, Afacan O, Ortinau CM, Yang E, Warfield SK, Gholipour A. Fetal brain growth portrayed by a spatiotemporal diffusion tensor MRI atlas computed from in utero images. Neuroimage. 2019 01 15; 185:593-608. PMID: 30172006.
    Citations: 27     Fields:    Translation:Humans
  49. Mohseni Salehi SS, Khan S, Erdogmus D, Gholipour A. Real-Time Deep Pose Estimation With Geodesic Loss for Image-to-Template Rigid Registration. IEEE Trans Med Imaging. 2019 02; 38(2):470-481. PMID: 30138909; PMCID: PMC6438698.
    Citations: 14     Fields:    Translation:Humans
  50. Benali S, Johnston PR, Gholipour A, Dugan ME, Heberlein K, Bhat H, Bixby SD. Simultaneous multi-slice accelerated turbo spin echo of the knee in pediatric patients. Skeletal Radiol. 2018 Jun; 47(6):821-831. PMID: 29332200.
    Citations: 4     Fields:    Translation:Humans
  51. Kurugol S, Marami B, Afacan O, Warfield SK, Gholipour A. Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices. Mol Imaging Reconstr Anal Mov Body Organs Stroke Imaging Treat (2017). 2017; 10555:75-85. PMID: 29457154; PMCID: PMC5810407.
    Citations: 3     
  52. Mohseni Salehi SS, Erdogmus D, Gholipour A. Auto-Context Convolutional Neural Network (Auto-Net) for Brain Extraction in Magnetic Resonance Imaging. IEEE Trans Med Imaging. 2017 11; 36(11):2319-2330. PMID: 28678704.
    Citations: 34     Fields:    Translation:Humans
  53. Marami B, Mohseni Salehi SS, Afacan O, Scherrer B, Rollins CK, Yang E, Estroff JA, Warfield SK, Gholipour A. Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis. Neuroimage. 2017 08 01; 156:475-488. PMID: 28433624.
    Citations: 26     Fields:    Translation:Humans
  54. Tourbier S, Velasco-Annis C, Taimouri V, Hagmann P, Meuli R, Warfield SK, Bach Cuadra M, Gholipour A. Automated template-based brain localization and extraction for fetal brain MRI reconstruction. Neuroimage. 2017 07 15; 155:460-472. PMID: 28408290.
    Citations: 10     Fields:    Translation:Humans
  55. Gholipour A, Rollins CK, Velasco-Annis C, Ouaalam A, Akhondi-Asl A, Afacan O, Ortinau CM, Clancy S, Limperopoulos C, Yang E, Estroff JA, Warfield SK. A normative spatiotemporal MRI atlas of the fetal brain for automatic segmentation and analysis of early brain growth. Sci Rep. 2017 03 28; 7(1):476. PMID: 28352082.
    Citations: 56     Fields:    Translation:Humans
  56. Jia Y, Gholipour A, He Z, Warfield SK. A New Sparse Representation Framework for Reconstruction of an Isotropic High Spatial Resolution MR Volume From Orthogonal Anisotropic Resolution Scans. IEEE Trans Med Imaging. 2017 05; 36(5):1182-1193. PMID: 28129152.
    Citations: 4     Fields:    Translation:Humans
  57. Marami B, Scherrer B, Afacan O, Warfield SK, Gholipour A. Motion-Robust Reconstruction based on Simultaneous Multi-Slice Registration for Diffusion-Weighted MRI of Moving Subjects. Med Image Comput Comput Assist Interv. 2016 Oct; 9902:544-552. PMID: 28127590.
    Citations: 6     Fields:    Translation:Humans
  58. Marami B, Scherrer B, Afacan O, Erem B, Warfield SK, Gholipour A. Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking. IEEE Trans Med Imaging. 2016 10; 35(10):2258-2269. PMID: 27834639.
    Citations: 15     Fields:    Translation:Humans
  59. Afacan O, Gholipour A, Mulkern RV, Barnewolt CE, Estroff JA, Connolly SA, Parad RB, Bairdain S, Warfield SK. Fetal lung apparent diffusion coefficient measurement using diffusion-weighted MRI at 3 Tesla: Correlation with gestational age. J Magn Reson Imaging. 2016 12; 44(6):1650-1655. PMID: 27159847.
    Citations: 4     Fields:    Translation:HumansCells
  60. Pier DB, Gholipour A, Afacan O, Velasco-Annis C, Clancy S, Kapur K, Estroff JA, Warfield SK. 3D Super-Resolution Motion-Corrected MRI: Validation of Fetal Posterior Fossa Measurements. J Neuroimaging. 2016 09; 26(5):539-44. PMID: 26990618.
    Citations: 7     Fields:    Translation:Humans
  61. Gholipour A, Afacan O, Aganj I, Scherrer B, Prabhu SP, Sahin M, Warfield SK. Super-resolution reconstruction in frequency, image, and wavelet domains to reduce through-plane partial voluming in MRI. Med Phys. 2015 Dec; 42(12):6919-32. PMID: 26632048.
    Citations: 9     Fields:    Translation:Humans
  62. Jia Y, He Z, Gholipour A, Warfield SK. Single Anisotropic 3-D MR Image Upsampling via Overcomplete Dictionary Trained From In-Plane High Resolution Slices. IEEE J Biomed Health Inform. 2016 11; 20(6):1552-1561. PMID: 26302522.
    Citations: 4     Fields:    Translation:Humans
  63. Velasco-Annis C, Gholipour A, Afacan O, Prabhu SP, Estroff JA, Warfield SK. Normative biometrics for fetal ocular growth using volumetric MRI reconstruction. Prenat Diagn. 2015 Apr; 35(4):400-8. PMID: 25601041; PMCID: PMC4390455.
    Citations: 8     Fields:    Translation:Humans
  64. Scherrer B, Afacan O, Taquet M, Prabhu SP, Gholipour A, Warfield SK. Accelerated High Spatial Resolution Diffusion-Weighted Imaging. Inf Process Med Imaging. 2015; 24:69-81. PMID: 26167096.
    Citations: 6     Fields:    Translation:Humans
  65. Gholipour A, Lee EY, Warfield SK. The anatomy and art of writing a successful grant application: a practical step-by-step approach. Pediatr Radiol. 2014 Dec; 44(12):1512-7. PMID: 25408133.
    Citations: 1     Fields:    Translation:Humans
  66. Gholipour A, Estroff JA, Barnewolt CE, Robertson RL, Grant PE, Gagoski B, Warfield SK, Afacan O, Connolly SA, Neil JJ, Wolfberg A, Mulkern RV. Fetal MRI: A Technical Update with Educational Aspirations. Concepts Magn Reson Part A Bridg Educ Res. 2014 Nov; 43(6):237-266. PMID: 26225129; PMCID: PMC4515352.
    Citations: 35     
  67. Gholipour A, Limperopoulos C, Clancy S, Clouchoux C, Akhondi-Asl A, Estroff JA, Warfield SK. Construction of a deformable spatiotemporal MRI atlas of the fetal brain: evaluation of similarity metrics and deformation models. Med Image Comput Comput Assist Interv. 2014; 17(Pt 2):292-9. PMID: 25485391.
    Citations: 18     Fields:    Translation:Humans
  68. Clouchoux C, du Plessis AJ, Bouyssi-Kobar M, Tworetzky W, McElhinney DB, Brown DW, Gholipour A, Kudelski D, Warfield SK, McCarter RJ, Robertson RL, Evans AC, Newburger JW, Limperopoulos C. Delayed cortical development in fetuses with complex congenital heart disease. Cereb Cortex. 2013 Dec; 23(12):2932-43. PMID: 22977063.
    Citations: 105     Fields:    Translation:Humans
  69. Scherrer B, Gholipour A, Warfield SK. Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions. Med Image Anal. 2012 Oct; 16(7):1465-76. PMID: 22770597.
    Citations: 41     Fields:    Translation:HumansCells
  70. Gholipour A, Akhondi-Asl A, Estroff JA, Warfield SK. Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly. Neuroimage. 2012 Apr 15; 60(3):1819-31. PMID: 22500924.
    Citations: 36     Fields:    Translation:Humans
  71. Scherrer B, Gholipour A, Warfield SK. Super-Resolution Reconstruction of Diffusion-Weighted Images from Distortion Compensated Orthogonal Anisotropic Acquisitions. Proc Workshop Math Methods Biomed Image Analysis. 2012 Jan; 2012:249-254. PMID: 25356442.
    Citations: 1     
  72. Clouchoux C, Kudelski D, Gholipour A, Warfield SK, Viseur S, Bouyssi-Kobar M, Mari JL, Evans AC, du Plessis AJ, Limperopoulos C. Quantitative in vivo MRI measurement of cortical development in the fetus. Brain Struct Funct. 2012 Jan; 217(1):127-39. PMID: 21562906.
    Citations: 69     Fields:    Translation:Humans
  73. Yousefi S, Kehtarnavaz N, Gholipour A. Improved labeling of subcortical brain structures in atlas-based segmentation of magnetic resonance images. IEEE Trans Biomed Eng. 2012 Jul; 59(7):1808-17. PMID: 21382762.
    Citations: 6     Fields:    Translation:Humans
  74. Gholipour A, Kehtarnavaz N, Scherrer B, Warfield SK. On the accuracy of unwarping techniques for the correction of susceptibility-induced geometric distortion in magnetic resonance Echo-planar images. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:6997-7000. PMID: 22255949.
    Citations: 11     Fields:    Translation:Humans
  75. Yousefi S, Kehtarnavaz N, Gholipour A. Synthesis of cervical tissue second harmonic generation images using Markov random field modeling. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:6180-3. PMID: 22255750.
    Citations:    Fields:    Translation:HumansAnimals
  76. Gholipour A, Polak M, van der Kouwe A, Nevo E, Warfield SK. Motion-robust MRI through real-time motion tracking and retrospective super-resolution volume reconstruction. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:5722-5. PMID: 22255639.
    Citations: 8     Fields:    Translation:Humans
  77. Scherrer B, Gholipour A, Warfield SK. Super-resolution in diffusion-weighted imaging. Med Image Comput Comput Assist Interv. 2011; 14(Pt 2):124-32. PMID: 21995021.
    Citations: 7     Fields:    Translation:HumansCells
  78. Gholipour A, Estroff JA, Barnewolt CE, Connolly SA, Warfield SK. Fetal brain volumetry through MRI volumetric reconstruction and segmentation. Int J Comput Assist Radiol Surg. 2011 May; 6(3):329-39. PMID: 20625848.
    Citations: 27     Fields:    Translation:Humans
  79. Gholipour A, Estroff JA, Warfield SK. Robust super-resolution volume reconstruction from slice acquisitions: application to fetal brain MRI. IEEE Trans Med Imaging. 2010 Oct; 29(10):1739-58. PMID: 20529730.
    Citations: 100     Fields:    Translation:Humans
  80. Gholipour A, Kehtarnavaz N, Yousefi S, Gopinath K, Briggs R. Symmetric deformable image registration via optimization of information theoretic measures. Journal of Image and Vision Computing. 2010; 28(6):965-975. View Publication.
  81. Gholipour A, Estroff JA, Sahin M, Prabhu SP, Warfield SK. Maximum a posteriori estimation of isotropic high-resolution volumetric MRI from orthogonal thick-slice scans. Med Image Comput Comput Assist Interv. 2010; 13(Pt 2):109-16. PMID: 20879305.
    Citations: 14     Fields:    Translation:Humans
  82. Gholipour A, Warfield S. Super-resolution reconstruction of fetal brain MRI. Proc. MICCAI Workshop on Image Analysis for the Developing Brain (IADB’2009). 2009; 45–52. View Publication.
  83. Gholipour A, Kehtarnavaz N, Briggs RW, Gopinath KS, Ringe W, Whittemore A, Cheshkov S, Bakhadirov K. Validation of non-rigid registration between functional and anatomical magnetic resonance brain images. IEEE Trans Biomed Eng. 2008 Feb; 55(2 Pt 1):563-71. PMID: 18269991.
    Citations: 5     Fields:    Translation:Humans
  84. Gholipour A, Kehtarnavaz N, Gopinath K, Briggs R. Cross-validation of deformable registration with field maps in functional magnetic resonance brain imaging. IEEE Journal of Selected Topics in Signal Processing. 2008; 2(6):854-869. View Publication.
  85. Gholipour A, Kehtarnavaz N, Gopinath K, Briggs R, Panahi I. Average field map image template for Echo-Planar image analysis. Annu Int Conf IEEE Eng Med Biol Soc. 2008; 2008:94-7. PMID: 19162602.
    Citations: 19     Fields:    
  86. Tsang O, Gholipour A, Kehtarnavaz N, Gopinath K, Briggs R, Panahi I. Comparison of tissue segmentation algorithms in neuroimage analysis software tools. Annu Int Conf IEEE Eng Med Biol Soc. 2008; 2008:3924-8. PMID: 19163571.
    Citations: 16     Fields:    Translation:Humans
  87. Gholipour A, Kehtarnavaz N, Briggs R, Devous M, Gopinath K. Brain functional localization: a survey of image registration techniques. IEEE Trans Med Imaging. 2007 Apr; 26(4):427-51. PMID: 17427731.
    Citations: 56     Fields:    Translation:Humans
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.