Harvard Catalyst Profiles

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Gil Alterovitz, Ph.D.

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The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. R01GM118467 (ALTEROVITZ, GIL) Sep 1, 2016 - Aug 31, 2022
    Towards a generalizable drug discovery framework based on intrinsically disordered regions
    Role: Principal Investigator
  2. R01HG004836 (ALTEROVITZ, GIL) Sep 30, 2009 - Aug 31, 2013
    Automated Integration of Biomedical Knowledge
    Role: Principal Investigator
  3. R00LM009826 (ALTEROVITZ, GIL) Sep 30, 2008 - Sep 29, 2015
    A Holistic Approach to Information Processing for Biomedical Networks
    Role: Principal Investigator
  4. K99LM009826 (ALTEROVITZ, GIL) Sep 30, 2008 - Sep 29, 2010
    A Holistic Approach to Information Processing for Biomedical Networks
    Role: Principal Investigator
  5. R21DA025168 (ALTEROVITZ, GIL) May 1, 2008 - Apr 30, 2013
    Beyond Association: Predictive Modeling of Nicotine Dependance
    Role: Principal Investigator

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Suraj V, Del Vecchio Fitz C, Kleiman LB, Bhavnani SK, Jani C, Shah S, McKay RR, Warner J, Alterovitz G. SMART COVID Navigator, a Clinical Decision Support Tool for COVID-19 Treatment: Design and Development Study. J Med Internet Res. 2022 02 18; 24(2):e29279. PMID: 34932493.
    Citations:    Fields:    Translation:HumansCells
  2. Na I, Dai H, Li H, Gupta A, Kreda D, Zhang P, Chen X, Zhang L, Alterovitz G. Computational prediction and validation of specific EmbR binding site on PknH. Synth Syst Biotechnol. 2021 Dec; 6(4):429-436. PMID: 34901481.
  3. Khalifa A, Mason CC, Garvin JH, Williams MS, Del Fiol G, Jackson BR, Bleyl SB, Alterovitz G, Huff SM. Interoperable genetic lab test reports: mapping key data elements to HL7 FHIR specifications and professional reporting guidelines. J Am Med Inform Assoc. 2021 11 25; 28(12):2617-2625. PMID: 34569596.
    Citations: 1     Fields:    Translation:Humans
  4. Rehm HL, Page AJH, Smith L, Adams JB, Alterovitz G, Babb LJ, Barkley MP, Baudis M, Beauvais MJS, Beck T, Beckmann JS, Beltran S, Bernick D, Bernier A, Bonfield JK, Boughtwood TF, Bourque G, Bowers SR, Brookes AJ, Brudno M, Brush MH, Bujold D, Burdett T, Buske OJ, Cabili MN, Cameron DL, Carroll RJ, Casas-Silva E, Chakravarty D, Chaudhari BP, Chen SH, Cherry JM, Chung J, Cline M, Clissold HL, Cook-Deegan RM, Courtot M, Cunningham F, Cupak M, Davies RM, Denisko D, Doerr MJ, Dolman LI, Dove ES, Dursi LJ, Dyke SOM, Eddy JA, Eilbeck K, Ellrott KP, Fairley S, Fakhro KA, Firth HV, Fitzsimons MS, Fiume M, Flicek P, Fore IM, Freeberg MA, Freimuth RR, Fromont LA, Fuerth J, Gaff CL, Gan W, Ghanaim EM, Glazer D, Green RC, Griffith M, Griffith OL, Grossman RL, Groza T, Auvil JMG, Guigó R, Gupta D, Haendel MA, Hamosh A, Hansen DP, Hart RK, Hartley DM, Haussler D, Hendricks-Sturrup RM, Ho CWL, Hobb AE, Hoffman MM, Hofmann OM, Holub P, Hsu JS, Hubaux JP, Hunt SE, Husami A, Jacobsen JO, Jamuar SS, Janes EL, Jeanson F, Jené A, Johns AL, Joly Y, Jones SJM, Kanitz A, Kato K, Keane TM, Kekesi-Lafrance K, Kelleher J, Kerry G, Khor SS, Knoppers BM, Konopko MA, Kosaki K, Kuba M, Lawson J, Leinonen R, Li S, Lin MF, Linden M, Liu X, Udara Liyanage I, Lopez J, Lucassen AM, Lukowski M, Mann AL, Marshall J, Mattioni M, Metke-Jimenez A, Middleton A, Milne RJ, Molnár-Gábor F, Mulder N, Munoz-Torres MC, Nag R, Nakagawa H, Nasir J, Navarro A, Nelson TH, Niewielska A, Nisselle A, Niu J, Nyrönen TH, O'Connor BD, Oesterle S, Ogishima S, Wang VO, Paglione LAD, Palumbo E, Parkinson HE, Philippakis AA, Pizarro AD, Prlic A, Rambla J, Rendon A, Rider RA, Robinson PN, Rodarmer KW, Rodriguez LL, Rubin AF, Rueda M, Rushton GA, Ryan RS, Saunders GI, Schuilenburg H, Schwede T, Scollen S, Senf A, Sheffield NC, Skantharajah N, Smith AV, Sofia HJ, Spalding D, Spurdle AB, Stark Z, Stein LD, Suematsu M, Tan P, Tedds JA, Thomson AA, Thorogood A, Tickle TL, Tokunaga K, Törnroos J, Torrents D, Upchurch S, Valencia A, Guimera RV, Vamathevan J, Varma S, Vears DF, Viner C, Voisin C, Wagner AH, Wallace SE, Walsh BP, Williams MS, Winkler EC, Wold BJ, Wood GM, Woolley JP, Yamasaki C, Yates AD, Yung CK, Zass LJ, Zaytseva K, Zhang J, Goodhand P, North K, Birney E. GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell Genom. 2021 Nov 10; 1(2). PMID: 35072136.
    Citations: 4     
  5. Wagner AH, Babb L, Alterovitz G, Baudis M, Brush M, Cameron DL, Cline M, Griffith M, Griffith OL, Hunt SE, Kreda D, Lee JM, Li S, Lopez J, Moyer E, Nelson T, Patel RY, Riehle K, Robinson PN, Rynearson S, Schuilenburg H, Tsukanov K, Walsh B, Konopko M, Rehm HL, Yates AD, Freimuth RR, Hart RK. The GA4GH Variation Representation Specification: A computational framework for variation representation and federated identification. Cell Genom. 2021 Nov 10; 1(2). PMID: 35311178.
  6. Tong Y, Zhang J, Wang L, Wang Q, Huang H, Chen X, Zhang Q, Li H, Sun N, Liu G, Zhang B, Song F, Alterovitz G, Dai H, Zhang L. Hyper-Synergistic Antifungal Activity of Rapamycin and Peptide-Like Compounds against Candida albicans Orthogonally via Tor1 Kinase. ACS Infect Dis. 2021 10 08; 7(10):2826-2835. PMID: 34514778.
    Citations: 1     Fields:    Translation:HumansAnimals
  7. An N, Mattison J, Chen X, Alterovitz G. Team Science in Precision Medicine: Study of Coleadership and Coauthorship Across Health Organizations. J Med Internet Res. 2021 06 14; 23(6):e17137. PMID: 34125070.
    Citations:    Fields:    Translation:Humans
  8. Makridis C, Hurley S, Klote M, Alterovitz G. Ethical Applications of Artificial Intelligence: Evidence From Health Research on Veterans. JMIR Med Inform. 2021 Jun 02; 9(6):e28921. PMID: 34076584.
    Citations: 1     
  9. Makridis CA, Strebel T, Marconi V, Alterovitz G. Designing COVID-19 mortality predictions to advance clinical outcomes: Evidence from the Department of Veterans Affairs. BMJ Health Care Inform. 2021 Jun; 28(1). PMID: 34108143.
    Citations:    Fields:    Translation:Humans
  10. Dong Z, Alterovitz G. netAE: semi-supervised dimensionality reduction of single-cell RNA sequencing to facilitate cell labeling. Bioinformatics. 2021 04 09; 37(1):43-49. PMID: 32726427.
    Citations: 2     Fields:    Translation:Cells
  11. Makridis CA, Zhao DY, Bejan CA, Alterovitz G. Leveraging machine learning to characterize the role of socio-economic determinants on physical health and well-being among veterans. Comput Biol Med. 2021 06; 133:104354. PMID: 33845269.
    Citations: 2     Fields:    Translation:Humans
  12. Dolin RH, Gothi SR, Boxwala A, Heale BSE, Husami A, Jones J, Khangar H, Londhe S, Naeymi-Rad F, Rao S, Rapchak B, Shalaby J, Suraj V, Xie N, Chamala S, Alterovitz G. vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration. BMC Bioinformatics. 2021 Mar 02; 22(1):104. PMID: 33653260.
    Citations:    Fields:    Translation:Humans
  13. Zhang A, Teng L, Alterovitz G. An explainable machine learning platform for pyrazinamide resistance prediction and genetic feature identification of Mycobacterium tuberculosis. J Am Med Inform Assoc. 2021 03 01; 28(3):533-540. PMID: 33215194.
    Citations: 2     Fields:    Translation:HumansCells
  14. Mudide A, Alterovitz G. SARS-CoV-2 Drug Discovery based on Intrinsically Disordered Regions. Pac Symp Biocomput. 2021; 26:131-142. PMID: 33691011.
    Citations:    Fields:    Translation:HumansCells
  15. Alterovitz G, Alterovitz WL, Cassell GH, Zhang L, Dunker AK. AI for infectious disease modelling and therapeutics. Pac Symp Biocomput. 2021; 26:91-94. PMID: 33691007.
    Citations:    Fields:    
  16. Makridis CA, Mudide A, Alterovitz G. How Much Does the (Social) Environment Matter? Using Artificial Intelligence to Predict COVID-19 Outcomes with Socio-demographic Data. Pac Symp Biocomput. 2021; 26:328-335. PMID: 33691029.
    Citations: 1     Fields:    Translation:HumansCells
  17. Xie F, Dai S, Zhao Y, Huang P, Yu S, Ren B, Wang Q, Ji Z, Alterovitz G, Zhang Q, Zhang J, Chen X, Jiang L, Song F, Liu H, Ausubel FM, Liu X, Dai H, Zhang L. Generation of Fluorinated Amychelin Siderophores against Pseudomonas aeruginosa Infections by a Combination of Genome Mining and Mutasynthesis. Cell Chem Biol. 2020 12 17; 27(12):1532-1543.e6. PMID: 33186541.
    Citations: 1     Fields:    Translation:AnimalsCells
  18. Seligson ND, Warner JL, Dalton WS, Martin D, Miller RS, Patt D, Kehl KL, Palchuk MB, Alterovitz G, Wiley LK, Huang M, Shen F, Wang Y, Nguyen KA, Wong AF, Meric-Bernstam F, Bernstam EV, Chen JL. Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity. J Am Med Inform Assoc. 2020 11 01; 27(11):1808-1812. PMID: 32885823.
    Citations: 3     Fields:    Translation:Humans
  19. Solomon IB, McGraw S, Shen J, Albayrak A, Alterovitz G, Davies M, Del Vecchio Fitz C, Freedman RA, Lopez LN, Sholl LM, Van Allen E, Mortimer J, Fakih M, Pal S, Reckamp KL, Yuan Y, Gray SW. Engaging Patients in Precision Oncology: Development and Usability of a Web-Based Patient-Facing Genomic Sequencing Report. JCO Precis Oncol. 2020; 4. PMID: 32923887.
    Citations: 3     Fields:    
  20. Alterovitz G, Heale B, Jones J, Kreda D, Lin F, Liu L, Liu X, Mandl KD, Poloway DW, Ramoni R, Wagner A, Warner JL. FHIR Genomics: enabling standardization for precision medicine use cases. NPJ Genom Med. 2020 Mar 18; 5(1):13. PMID: 33579955.
  21. Alterovitz G, Heale B, Jones J, Kreda D, Lin F, Liu L, Liu X, Mandl KD, Poloway DW, Ramoni R, Wagner A, Warner JL. FHIR Genomics: enabling standardization for precision medicine use cases. NPJ Genom Med. 2020; 5:13. PMID: 32194985.
    Citations: 10     
  22. Wang W, Li S, Li Z, Zhang J, Fan K, Tan G, Ai G, Lam SM, Shui G, Yang Z, Lu H, Jin P, Li Y, Chen X, Xia X, Liu X, Dannelly HK, Yang C, Yang Y, Zhang S, Alterovitz G, Xiang W, Zhang L. Publisher Correction: Harnessing the intracellular triacylglycerols for titer improvement of polyketides in Streptomyces. Nat Biotechnol. 2020 Jan; 38(1):109. PMID: 31853051.
    Citations: 1     Fields:    
  23. Wang W, Li S, Li Z, Zhang J, Fan K, Tan G, Ai G, Lam SM, Shui G, Yang Z, Lu H, Jin P, Li Y, Chen X, Xia X, Liu X, Dannelly HK, Yang C, Yang Y, Zhang S, Alterovitz G, Xiang W, Zhang L. Harnessing the intracellular triacylglycerols for titer improvement of polyketides in Streptomyces. Nat Biotechnol. 2020 01; 38(1):76-83. PMID: 31819261.
    Citations: 27     Fields:    Translation:Cells
  24. An N, Xiao Y, Yuan J, Yang J, Alterovitz G. Extracting causal relations from the literature with word vector mapping. Comput Biol Med. 2019 12; 115:103524. PMID: 31698234.
    Citations: 1     Fields:    Translation:Humans
  25. Kim MY, Na I, Kim JS, Son SH, Choi S, Lee SE, Kim JH, Jang K, Alterovitz G, Chen Y, van der Vaart A, Won HS, Uversky VN, Kim CG. Rational discovery of antimetastatic agents targeting the intrinsically disordered region of MBD2. Sci Adv. 2019 11; 5(11):eaav9810. PMID: 31799386.
    Citations: 6     Fields:    Translation:HumansAnimalsCells
  26. Li H, Wang X, Lu X, Zhu H, Li S, Duan S, Zhao X, Zhang F, Alterovitz G, Wang F, Li Q, Tian XL, Xu M. Co-expression network analysis identified hub genes critical to triglyceride and free fatty acid metabolism as key regulators of age-related vascular dysfunction in mice. Aging (Albany NY). 2019 09 12; 11(18):7620-7638. PMID: 31514170.
    Citations: 44     Fields:    Translation:AnimalsCells
  27. Liang M, Li Z, Wang W, Liu J, Liu L, Zhu G, Karthik L, Wang M, Wang KF, Wang Z, Yu J, Shuai Y, Yu J, Zhang L, Yang Z, Li C, Zhang Q, Shi T, Zhou L, Xie F, Dai H, Liu X, Zhang J, Liu G, Zhuo Y, Zhang B, Liu C, Li S, Xia X, Tong Y, Liu Y, Alterovitz G, Tan GY, Zhang LX. A CRISPR-Cas12a-derived biosensing platform for the highly sensitive detection of diverse small molecules. Nat Commun. 2019 08 14; 10(1):3672. PMID: 31413315.
    Citations: 36     Fields:    Translation:HumansCells
  28. Liao M, Tong T, Zong Y, Zhou X, Cheng L, Huang R, Ren B, Alterovitz G. Application of Omics and Bioinformatics Tools in Streptococcus Research. Curr Issues Mol Biol. 2019; 32:327-376. PMID: 31166175.
    Citations:    Fields:    Translation:HumansCells
  29. Alterovitz G, Dean D, Goble C, Crusoe MR, Soiland-Reyes S, Bell A, Hayes A, Suresh A, Purkayastha A, King CH, Taylor D, Johanson E, Thompson EE, Donaldson E, Morizono H, Tsang H, Vora JK, Goecks J, Yao J, Almeida JS, Keeney J, Addepalli K, Krampis K, Smith KM, Guo L, Walderhaug M, Schito M, Ezewudo M, Guimera N, Walsh P, Kahsay R, Gottipati S, Rodwell TC, Bloom T, Lai Y, Simonyan V, Mazumder R. Enabling precision medicine via standard communication of HTS provenance, analysis, and results. PLoS Biol. 2018 12; 16(12):e3000099. PMID: 30596645.
    Citations: 10     Fields:    Translation:HumansAnimals
  30. Warner JL, Prasad I, Bennett M, Arniella M, Beeghly-Fadiel A, Mandl KD, Alterovitz G. SMART Cancer Navigator: A Framework for Implementing ASCO Workshop Recommendations to Enable Precision Cancer Medicine. JCO Precis Oncol. 2018; 2018. PMID: 30238071.
    Citations: 14     Fields:    
  31. Zhou Y, Yang H, Zhou X, Luo H, Tang F, Yang J, Alterovitz G, Cheng L, Ren B. Lovastatin synergizes with itraconazole against planktonic cells and biofilms of Candida albicans through the regulation on ergosterol biosynthesis pathway. Appl Microbiol Biotechnol. 2018 Jun; 102(12):5255-5264. PMID: 29691631.
    Citations: 9     Fields:    Translation:Animals
  32. Warner JL, Yang PC, Alterovitz G. Overcoming the Straw Man Effect in Oncology: Visualization and Ranking of Chemotherapy Regimens Using an Information Theoretic Approach. JCO Clin Cancer Inform. 2017 11; 1:1-9. PMID: 30657401.
    Citations:    Fields:    Translation:Humans
  33. Barlow SM, Maron JL, Alterovitz G, Song D, Wilson BJ, Jegatheesan P, Govindaswami B, Lee J, Rosner AO. Somatosensory Modulation of Salivary Gene Expression and Oral Feeding in Preterm Infants: Randomized Controlled Trial. JMIR Res Protoc. 2017 Jun 14; 6(6):e113. PMID: 28615158.
    Citations: 5     
  34. Yang J, Yu S, Gong B, An N, Alterovitz G. Biobrick chain recommendations for genetic circuit design. Comput Biol Med. 2017 07 01; 86:31-39. PMID: 28499216.
    Citations:    Fields:    
  35. Zollanvari A, Alterovitz G. SNP by SNP by environment interaction network of alcoholism. BMC Syst Biol. 2017 03 14; 11(Suppl 3):19. PMID: 28361705.
    Citations: 5     Fields:    Translation:Humans
  36. Yang J, Wang H, Ding H, An N, Alterovitz G. Nonlinear dimensionality reduction methods for synthetic biology biobricks' visualization. BMC Bioinformatics. 2017 Jan 19; 18(1):47. PMID: 28103789.
    Citations: 2     Fields:    
  37. Wang A, An N, Yang J, Chen G, Li L, Alterovitz G. Wrapper-based gene selection with Markov blanket. Comput Biol Med. 2017 02 01; 81:11-23. PMID: 28006702.
    Citations: 7     Fields:    Translation:Humans
  38. Yang Y, Chen S, Yang F, Zhang L, Alterovitz G, Zhu H, Xuan J, Yang X, Luo H, Mu J, He L, Luo X, Xing Q. HLA-B*51:01 is strongly associated with clindamycin-related cutaneous adverse drug reactions. Pharmacogenomics J. 2017 12; 17(6):501-505. PMID: 27527109.
    Citations: 3     Fields:    Translation:HumansCells
  39. Kapur A, Marwah K, Alterovitz G. Gene expression prediction using low-rank matrix completion. BMC Bioinformatics. 2016 Jun 17; 17(1):243. PMID: 27317252.
    Citations: 8     Fields:    Translation:HumansCells
  40. Warner JL, Rioth MJ, Mandl KD, Mandel JC, Kreda DA, Kohane IS, Carbone D, Oreto R, Wang L, Zhu S, Yao H, Alterovitz G. SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care. J Am Med Inform Assoc. 2016 07; 23(4):701-10. PMID: 27018265.
    Citations: 25     Fields:    Translation:Humans
  41. Warner JL, Zhang P, Liu J, Alterovitz G. Classification of hospital acquired complications using temporal clinical information from a large electronic health record. J Biomed Inform. 2016 Feb; 59:209-17. PMID: 26707449.
    Citations: 8     Fields:    Translation:Humans
  42. Lawler M, Siu LL, Rehm HL, Chanock SJ, Alterovitz G, Burn J, Calvo F, Lacombe D, Teh BT, North KN, Sawyers CL. All the World's a Stage: Facilitating Discovery Science and Improved Cancer Care through the Global Alliance for Genomics and Health. Cancer Discov. 2015 Nov; 5(11):1133-6. PMID: 26526696.
    Citations: 30     Fields:    Translation:Humans
  43. Alterovitz G, Warner J, Zhang P, Chen Y, Ullman-Cullere M, Kreda D, Kohane IS. SMART on FHIR Genomics: facilitating standardized clinico-genomic apps. J Am Med Inform Assoc. 2015 Nov; 22(6):1173-8. PMID: 26198304.
    Citations: 49     Fields:    Translation:Humans
  44. Wang A, An N, Chen G, Li L, Alterovitz G. Improving PLS-RFE based gene selection for microarray data classification. Comput Biol Med. 2015 Jul; 62:14-24. PMID: 25912984.
    Citations: 2     Fields:    
  45. Maron JL, Hwang JS, Pathak S, Ruthazer R, Russell RL, Alterovitz G. Computational gene expression modeling identifies salivary biomarker analysis that predict oral feeding readiness in the newborn. J Pediatr. 2015 Feb; 166(2):282-8.e5. PMID: 25620512.
    Citations: 9     Fields:    Translation:Humans
  46. Warner JL, Denny JC, Kreda DA, Alterovitz G. Seeing the forest through the trees: uncovering phenomic complexity through interactive network visualization. J Am Med Inform Assoc. 2015 Mar; 22(2):324-9. PMID: 25336590.
    Citations: 11     Fields:    
  47. Li Y, Wei Y, Li B, Alterovitz G. Modified Anderson-Darling test-based target detector in non-homogenous environments. Sensors (Basel). 2014 Aug 29; 14(9):16046-61. PMID: 25177800.
    Citations: 1     Fields:    
  48. Gao M, Warner J, Yang P, Alterovitz G. On the Bayesian Derivation of a Treatment-based Cancer Ontology. AMIA Jt Summits Transl Sci Proc. 2014; 2014:209-17. PMID: 25954588.
    Citations: 2     
  49. Villa A, Zollanvari A, Alterovitz G, Cagetti MG, Strohmenger L, Abati S. Prevalence of halitosis in children considering oral hygiene, gender and age. Int J Dent Hyg. 2014 Aug; 12(3):208-12. PMID: 24674694.
    Citations: 13     Fields:    Translation:Humans
  50. Warner JL, Yang P, Alterovitz G. Reversal of medical practices. Mayo Clin Proc. 2013 Oct; 88(10):1182-3. PMID: 24079691.
    Citations: 2     Fields:    Translation:Humans
  51. Warner JL, Zollanvari A, Ding Q, Zhang P, Snyder GM, Alterovitz G. Temporal phenome analysis of a large electronic health record cohort enables identification of hospital-acquired complications. J Am Med Inform Assoc. 2013 Dec; 20(e2):e281-7. PMID: 23907284.
    Citations: 16     Fields:    Translation:Humans
  52. Sonis S, Antin J, Tedaldi M, Alterovitz G. SNP-based Bayesian networks can predict oral mucositis risk in autologous stem cell transplant recipients. Oral Dis. 2013 Oct; 19(7):721-7. PMID: 23809011.
    Citations: 13     Fields:    Translation:Humans
  53. Warner JL, Alterovitz G, Bodio K, Joyce RM. External phenome analysis enables a rational federated query strategy to detect changing rates of treatment-related complications associated with multiple myeloma. J Am Med Inform Assoc. 2013 Jul-Aug; 20(4):696-9. PMID: 23515788.
    Citations: 6     Fields:    Translation:Humans
  54. Kallenbach J, Hsu WL, Dunker AK, Alterovitz G. Order-disorder interface characterization reveals critical factors for disease and drug targets. AMIA Jt Summits Transl Sci Proc. 2013; 2013:101. PMID: 24303310.
  55. K Koppula S, Zollanvari A, An N, Alterovitz G. Robust prediction-based analysis for genome-wide association and expression studies. AMIA Jt Summits Transl Sci Proc. 2013; 2013:104. PMID: 24303313.
  56. Warner J, Yang P, Alterovitz G. Automated synthesis and visualization of a chemotherapy treatment regimen network. Stud Health Technol Inform. 2013; 192:62-6. PMID: 23920516.
    Citations: 3     Fields:    Translation:Humans
  57. Warner J, Denny J, Kreda D, Alterovitz G. Analytic approaches to phenotypic complexity. Stud Health Technol Inform. 2013; 192:1267. PMID: 23921063.
  58. Warner JL, Alterovitz G. Phenome based analysis as a means for discovering context dependent clinical reference ranges. AMIA Annu Symp Proc. 2012; 2012:1441-9. PMID: 23304424.
    Citations: 14     Fields:    Translation:HumansCells
  59. Yu YH, Chiou GY, Huang PI, Lo WL, Wang CY, Lu KH, Yu CC, Alterovitz G, Huang WC, Lo JF, Hsu HS, Chiou SH. Network biology of tumor stem-like cells identified a regulatory role of CBX5 in lung cancer. Sci Rep. 2012; 2:584. PMID: 22900142.
    Citations: 23     Fields:    Translation:HumansAnimalsCells
  60. Quo CF, Kaddi C, Phan JH, Zollanvari A, Xu M, Wang MD, Alterovitz G. Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities. Brief Bioinform. 2012 Jul; 13(4):430-45. PMID: 22833495.
    Citations: 4     Fields:    
  61. Deng M, Zollanvari A, Alterovitz G. A bayesian translational framework for knowledge propagation, discovery, and integration under specific contexts. AMIA Jt Summits Transl Sci Proc. 2012; 2012:25-34. PMID: 22779044.
  62. Parikh N, Zollanvari A, Alterovitz G. An automated bayesian framework for integrative gene expression analysis and predictive medicine. AMIA Jt Summits Transl Sci Proc. 2012; 2012:95-104. PMID: 22779059.
  63. Marwah K, Katzin D, Zollanvari A, Noy NF, Ramoni M, Alterovitz G. Context-specific ontology integration: a bayesian approach. AMIA Jt Summits Transl Sci Proc. 2012; 2012:79-86. PMID: 22779057.
    Citations: 2     
  64. Ting C, Alterovitz G, Merlob A, Abdi R. Genomic studies of GVHD-lessons learned thus far. Bone Marrow Transplant. 2013 Jan; 48(1):4-9. PMID: 22343675.
    Citations: 7     Fields:    Translation:HumansAnimals
  65. Alterovitz G, Tuthill C, Rios I, Modelska K, Sonis S. Personalized medicine for mucositis: Bayesian networks identify unique gene clusters which predict the response to gamma-D-glutamyl-L-tryptophan (SCV-07) for the attenuation of chemoradiation-induced oral mucositis. Oral Oncol. 2011 Oct; 47(10):951-5. PMID: 21824803.
    Citations: 9     Fields:    Translation:HumansPHPublic HealthCTClinical Trials
  66. Alterovitz G, Cavalcanti S, Muso TM, Ramoni MF, Wang M. REVERSE ENGINEERING AND SYNTHESIS OF BIOMOLECULAR SYSTEMS - Session Introduction. Pac Symp Biocomput. 2011; 300-1. PMID: 21121057.
  67. Zollanvari A, Saccone NL, Bierut LJ, Ramoni MF, Alterovitz G. Is the reduction of dimensionality to a small number of features always necessary in constructing predictive models for analysis of complex diseases or behaviours? Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:3573-6. PMID: 22255111.
    Citations: 1     Fields:    Translation:Humans
  68. Chang HH, McGeachie M, Alterovitz G, Ramoni MF. Mapping transcription mechanisms from multimodal genomic data. BMC Bioinformatics. 2010 Oct 28; 11 Suppl 9:S2. PMID: 21044360.
    Citations: 5     Fields:    Translation:HumansCells
  69. Hartwig S, Ho J, Pandey P, Macisaac K, Taglienti M, Xiang M, Alterovitz G, Ramoni M, Fraenkel E, Kreidberg JA. Genomic characterization of Wilms' tumor suppressor 1 targets in nephron progenitor cells during kidney development. Development. 2010 Apr; 137(7):1189-203. PMID: 20215353.
    Citations: 53     Fields:    Translation:AnimalsCells
  70. Alterovitz G, Xiang M, Hill DP, Lomax J, Liu J, Cherkassky M, Dreyfuss J, Mungall C, Harris MA, Dolan ME, Blake JA, Ramoni MF. Ontology engineering. Nat Biotechnol. 2010 Feb; 28(2):128-30. PMID: 20139945.
    Citations: 36     Fields:    
  71. Alterovitz G, Cavalcanti S, Muso TM, Ramoni MF, Wang M. REVERSE ENGINEERING AND SYNTHESIS OF BIOMOLECULAR SYSTEMS - Session Introduction. Pac Symp Biocomput. 2010; 383-4. PMID: 19908390.
  72. Maron JL, Alterovitz G, Ramoni M, Johnson KL, Bianchi DW. High-throughput discovery and characterization of fetal protein trafficking in the blood of pregnant women. Proteomics Clin Appl. 2009 Dec; 3(12):1389-96. PMID: 20186258.
    Citations:    Fields:    
  73. Alterovitz G, Muso T, Ramoni MF. The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms. Brief Bioinform. 2010 Jan; 11(1):80-95. PMID: 19906839.
    Citations: 9     Fields:    Translation:Cells
  74. Celi LA, Hinske LC, Alterovitz G, Szolovits P. An artificial intelligence tool to predict fluid requirement in the intensive care unit: a proof-of-concept study. Crit Care. 2008; 12(6):R151. PMID: 19046450.
    Citations: 12     Fields:    Translation:Humans
  75. Alterovitz G, Jiwaji A, Ramoni MF. Automated programming for bioinformatics algorithm deployment. Bioinformatics. 2008 Feb 01; 24(3):450-1. PMID: 18174185.
    Citations: 1     Fields:    
  76. Alterovitz G, Xiang M, Liu J, Chang A, Ramoni MF. System-wide peripheral biomarker discovery using information theory. Pac Symp Biocomput. 2008; 231-42. PMID: 18229689.
    Citations: 4     Fields:    Translation:Humans
  77. Maron JL, Johnson KL, Slonim D, Lai CQ, Ramoni M, Alterovitz G, Jarrah Z, Yang Z, Bianchi DW. Gene expression analysis in pregnant women and their infants identifies unique fetal biomarkers that circulate in maternal blood. J Clin Invest. 2007 Oct; 117(10):3007-19. PMID: 17885688.
    Citations: 24     Fields:    Translation:Humans
  78. Alterovitz G, Liu J, Afkhami E, Ramoni MF. Bayesian methods for proteomics. Proteomics. 2007 Aug; 7(16):2843-55. PMID: 17654463.
    Citations: 4     Fields:    Translation:Cells
  79. Aivado M, Spentzos D, Germing U, Alterovitz G, Meng XY, Grall F, Giagounidis AA, Klement G, Steidl U, Otu HH, Czibere A, Prall WC, Iking-Konert C, Shayne M, Ramoni MF, Gattermann N, Haas R, Mitsiades CS, Fung ET, Libermann TA. Serum proteome profiling detects myelodysplastic syndromes and identifies CXC chemokine ligands 4 and 7 as markers for advanced disease. Proc Natl Acad Sci U S A. 2007 Jan 23; 104(4):1307-12. PMID: 17220270.
    Citations: 28     Fields:    Translation:Humans
  80. Alterovitz G, Xiang M, Mohan M, Ramoni MF. GO PaD: the Gene Ontology Partition Database. Nucleic Acids Res. 2007 Jan; 35(Database issue):D322-7. PMID: 17098937.
    Citations: 33     Fields:    Translation:Humans
  81. Alterovitz G, Liu J, Chow J, Ramoni MF. Automation, parallelism, and robotics for proteomics. Proteomics. 2006 Jul; 6(14):4016-22. PMID: 16786489.
    Citations:    Fields:    Translation:Animals
  82. Alterovitz G, Ramoni MF. Discovering biological guilds through topological abstraction. AMIA Annu Symp Proc. 2006; 1-5. PMID: 17238291.
    Citations: 4     Fields:    Translation:Cells
  83. Aivado M, Spentzos D, Alterovitz G, Otu HH, Grall F, Giagounidis AA, Wells M, Cho JY, Germing U, Czibere A, Prall WC, Porter C, Ramoni MF, Libermann TA. Optimization and evaluation of surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF MS) with reversed-phase protein arrays for protein profiling. Clin Chem Lab Med. 2005; 43(2):133-40. PMID: 15843205.
    Citations: 8     Fields:    
  84. Alterovitz G, Aivado M, Spentzos D, Libermann TA, Ramoni M, Kohane IS. Analysis and robot pipelined automation for SELDI-TOF mass spectrometry. Conf Proc IEEE Eng Med Biol Soc. 2004; 2004:3068-71. PMID: 17270926.
    Citations:    Fields:    
  85. Alterovitz G. Electrical engineering and nontechnical design variables of multiple inductive loop systems for auditoriums. J Deaf Stud Deaf Educ. 2004; 9(2):202-9. PMID: 15304441.
    Citations:    Fields:    Translation:Humans
  86. Alterovitz G, Staelin DH, Philip JH. Temporal patient state characterization using Iterative Order and Noise (ION) estimation: applications to anesthesia patient monitoring. J Clin Monit Comput. 2002 Aug; 17(6):351-9. PMID: 12885179.
    Citations:    Fields:    Translation:Humans
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.