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Stephen James O'Brien, Ph.D.

Title
Institution
Department
Address

Research
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. Z01BC005367 (O'BRIEN, STEPHEN J)
    NIH/NCI
    The Genetic Structure of Natural Populations Past and Present
    Role: Principal Investigator
  2. Z01BC005384 (O'BRIEN, STEPHEN J)
    NIH/NCI
    Haplotype Diversity and Mole. Epidem. of Cytokines
    Role: Principal Investigator
  3. Z01BC005385 (O'BRIEN, STEPHEN J)
    NIH/NCI
    The Development of the Domestic Cat, Felis catus, as an Animal Model for Ge
    Role: Principal Investigator
  4. Z01BC005389 (O'BRIEN, STEPHEN J)
    NIH/NCI
    Reproductive Strategies in Animal Species Emphasizing Developmental Biology
    Role: Principal Investigator
  5. Z01BC005529 (O'BRIEN, STEPHEN J)
    NIH/NCI
    Genomic and Molecular Organization of the Mammalian Majo
    Role: Principal Investigator

Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Toofan P, Busch C, Morrison H, O'Brien S, Jørgensen H, Copland M, Wheadon H. Chronic myeloid leukaemia cells require the bone morphogenic protein pathway for cell cycle progression and self-renewal. Cell Death Dis. 2018 Sep 11; 9(9):927. PMID: 30206237.
    View in: PubMed
  2. Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, Perelman PL, Graphodatsky AS, O'Brien SJ, Wang X, Clark AG, Acland GM, Trut LN, Zhang G. Author Correction: Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours. Nat Ecol Evol. 2018 Sep; 2(9):1514. PMID: 30104754.
    View in: PubMed
  3. Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, Perelman PL, Graphodatsky AS, O'Brien SJ, Wang X, Clark AG, Acland GM, Trut LN, Zhang G. Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours. Nat Ecol Evol. 2018 Sep; 2(9):1479-1491. PMID: 30082739.
    View in: PubMed
  4. Galbraith NJ, O'Brien SJ, Walker SP, Gardner SA, Polk HC, Barnes SL. Temporal expression of circulating miRNA after severe injury. Surgery. 2018 Oct; 164(4):665-672. PMID: 30077391.
    View in: PubMed
  5. Giannakoudakis DA, Pearsall F, Florent M, Lombardi J, O'Brien S, Bandosz TJ. Barium titanate perovskite nanoparticles as a photoreactive medium for chemical warfare agent detoxification. J Colloid Interface Sci. 2018 Dec 01; 531:233-244. PMID: 30032010.
    View in: PubMed
  6. Zhernakova DV, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Dobrynin P, Yurchenko AA, Shimansky V, Shcherbakova IV, Glotov AS, Valle DL, Tang M, Shin E, Schwarz KB, O'Brien SJ. Analytical "bake-off" of whole genome sequencing quality for the Genome Russia project using a small cohort for autoimmune hepatitis. PLoS One. 2018; 13(7):e0200423. PMID: 29995946.
    View in: PubMed
  7. Grigorev K, Kliver S, Dobrynin P, Komissarov A, Wolfsberger W, Krasheninnikova K, Afanador-Hernández YM, Brandt AL, Paulino LA, Carreras R, Rodríguez LE, Núñez A, Brandt JR, Silva F, Hernández-Martich JD, Majeske AJ, Antunes A, Roca AL, O'Brien SJ, Martínez-Cruzado JC, Oleksyk TK. Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola. Gigascience. 2018 06 01; 7(6). PMID: 29718205.
    View in: PubMed
  8. Wang S, Wang J, Fan MJ, Li TY, Pan H, Wang X, Liu HK, Lin QF, Zhang JG, Guan LP, Zhernakova DV, O'Brien SJ, Feng ZR, Chang L, Dai EH, Lu JH, Xi HL, Zeng Z, Yu YY, Wang BB. Identified OAS3 gene variants associated with coexistence of HBsAg and anti-HBs in chronic HBV infection. J Viral Hepat. 2018 08; 25(8):904-910. PMID: 29582521.
    View in: PubMed
  9. Gaubert P, Antunes A, Meng H, Miao L, Peigné S, Justy F, Njiokou F, Dufour S, Danquah E, Alahakoon J, Verheyen E, Stanley WT, O'Brien SJ, Johnson WE, Luo SJ. The Complete Phylogeny of Pangolins: Scaling Up Resources for the Molecular Tracing of the Most Trafficked Mammals on Earth. J Hered. 2018 May 11; 109(4):347-359. PMID: 29140441.
    View in: PubMed
  10. Yang C, Su H, Liao X, Han C, Yu T, Zhu G, Wang X, Winkler CA, O'Brien SJ, Peng T. Marker of proliferation Ki-67 expression is associated with transforming growth factor beta 1 and can predict the prognosis of patients with hepatic B virus-related hepatocellular carcinoma. Cancer Manag Res. 2018; 10:679-696. PMID: 29692627.
    View in: PubMed
  11. Chernyaeva E, Rotkevich M, Krasheninnikova K, Yurchenko A, Vyazovaya A, Mokrousov I, Solovieva N, Zhuravlev V, Yablonsky P, O'Brien SJ. Whole-Genome Analysis of Mycobacterium tuberculosis from Patients with Tuberculous Spondylitis, Russia. Emerg Infect Dis. 2018 Mar; 24(3):579-583. PMID: 29460750.
    View in: PubMed
  12. O'Brien SJ, Carter JV, Burton JF, Oxford BG, Schmidt MN, Hallion JC, Galandiuk S. The role of the miR-200 family in epithelial-mesenchymal transition in colorectal cancer: a systematic review. Int J Cancer. 2018 Jun 15; 142(12):2501-2511. PMID: 29388209.
    View in: PubMed
  13. Borges R, Johnson WE, O'Brien SJ, Gomes C, Heesy CP, Antunes A. Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments. BMC Genomics. 2018 02 05; 19(1):121. PMID: 29402215.
    View in: PubMed
  14. Harper C, Ludwig A, Clarke A, Makgopela K, Yurchenko A, Guthrie A, Dobrynin P, Tamazian G, Emslie R, van Heerden M, Hofmeyr M, Potter R, Roets J, Beytell P, Otiende M, Kariuki L, du Toit R, Anderson N, Okori J, Antonik A, Koepfli KP, Thompson P, O'Brien SJ. Robust forensic matching of confiscated horns to individual poached African rhinoceros. Curr Biol. 2018 Jan 08; 28(1):R13-R14. PMID: 29316411.
    View in: PubMed
  15. Netz U, Galbraith NJ, O'Brien S, Carter J, Manek S, Petras RE, Galandiuk S. Long-term outcomes following ileal pouch-anal anastomosis in patients with indeterminate colitis. Surgery. 2018 03; 163(3):535-541. PMID: 29325789.
    View in: PubMed
  16. Sandel MW, Aguilar A, Fast K, O'Brien S, Lapidus A, Allison DB, Teterina V, Kirilchik S. Complete Mitochondrial Genomes of Baikal Oilfishes (Perciformes: Cottoidei), Earth's Deepest-Swimming Freshwater Fishes. Mitochondrial DNA B Resour. 2017; 2(2):773-775. PMID: 29756047.
    View in: PubMed
  17. Urch E, Taylor SA, Ramkumar PN, Enker P, Doty SB, White AE, Delos D, Shorey ME, O'Brien SJ. Biceps Tenodesis: A Comparison of Tendon-to-Bone and Tendon-to-Tendon Healing in a Rat Model. Am J Orthop (Belle Mead NJ). 2017 Nov/Dec; 46(6):E388-E395. PMID: 29309450.
    View in: PubMed
  18. Corpus KT, Garcia GH, Liu JN, Dines DM, O'Brien SJ, Dines JS, Taylor SA. Long Head of Biceps Tendon Management: a Survey of the American Shoulder and Elbow Surgeons. HSS J. 2018 Feb; 14(1):34-40. PMID: 29398992.
    View in: PubMed
  19. Komissarov AS, Galkina SA, Koshel EI, Kulak MM, Dyomin AG, O'Brien SJ, Gaginskaya ER, Saifitdinova AF. New high copy tandem repeat in the content of the chicken W chromosome. Chromosoma. 2018 Mar; 127(1):73-83. PMID: 28951974.
    View in: PubMed
  20. O'Brien SJ, Johnson WE, Driscoll CA, Dobrynin P, Marker L. Conservation Genetics of the Cheetah: Lessons Learned and New Opportunities. J Hered. 2017 09 01; 108(6):671-677. PMID: 28821181.
    View in: PubMed
  21. Proskuryakova AA, Kulemzina AI, Perelman PL, Makunin AI, Larkin DM, Farré M, Kukekova AV, Lynn Johnson J, Lemskaya NA, Beklemisheva VR, Roelke-Parker ME, Bellizzi J, Ryder OA, O'Brien SJ, Graphodatsky AS. X Chromosome Evolution in Cetartiodactyla. Genes (Basel). 2017 Aug 31; 8(9). PMID: 28858207.
    View in: PubMed
  22. Yang CK, Wang XK, Liao XW, Han CY, Yu TD, Qin W, Zhu GZ, Su H, Yu L, Liu XG, Lu SC, Chen ZW, Liu Z, Huang KT, Liu ZT, Liang Y, Huang JL, Xiao KY, Peng MH, Winkle CA, O'Brien SJ, Peng T. Aldehyde dehydrogenase 1 (ALDH1) isoform expression and potential clinical implications in hepatocellular carcinoma. PLoS One. 2017; 12(8):e0182208. PMID: 28792511.
    View in: PubMed
  23. Figueiró HV, Li G, Trindade FJ, Assis J, Pais F, Fernandes G, Santos SHD, Hughes GM, Komissarov A, Antunes A, Trinca CS, Rodrigues MR, Linderoth T, Bi K, Silveira L, Azevedo FCC, Kantek D, Ramalho E, Brassaloti RA, Villela PMS, Nunes ALV, Teixeira RHF, Morato RG, Loska D, Saragüeta P, Gabaldón T, Teeling EC, O'Brien SJ, Nielsen R, Coutinho LL, Oliveira G, Murphy WJ, Eizirik E. Genome-wide signatures of complex introgression and adaptive evolution in the big cats. Sci Adv. 2017 Jul; 3(7):e1700299. PMID: 28776029.
    View in: PubMed
  24. Yang CK, Yu TD, Han CY, Qin W, Liao XW, Yu L, Liu XG, Zhu GZ, Su H, Lu SC, Chen ZW, Liu Z, Huang KT, Liu ZT, Liang Y, Huang JL, Mo ZN, Qin X, Li L, Xiao KY, Peng MH, Winkle CA, O'Brien SJ, Peng T. Genome-Wide Association Study of MKI67 Expression and its Clinical Implications in HBV-Related Hepatocellular Carcinoma in Southern China. Cell Physiol Biochem. 2017; 42(4):1342-1357. PMID: 28700999.
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  25. Jain P, Aoki E, Keating M, Wierda WG, O'Brien S, Gonzalez GN, Ferrajoli A, Jain N, Thompson PA, Jabbour E, Kanagal-Shamanna R, Pierce S, Alousi A, Hosing C, Khouri I, Estrov Z, Cortes J, Kantarjian H, Ravandi F, Kadia TM. Characteristics, outcomes, prognostic factors and treatment of patients with T-cell prolymphocytic leukemia (T-PLL). Ann Oncol. 2017 Jul 01; 28(7):1554-1559. PMID: 28379307.
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  26. Urch E, Taylor SA, Zitkovsky H, O'Brien SJ, Dines JS, Dines DM. A Modification of the Active Compression Test for the Shoulder Biceps-Labrum Complex. Arthrosc Tech. 2017 Jun; 6(3):e859-e862. PMID: 28706843.
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  27. Brown JR, Hillmen P, O'Brien S, Barrientos JC, Reddy NM, Coutre SE, Tam CS, Mulligan SP, Jaeger U, Barr PM, Furman RR, Kipps TJ, Cymbalista F, Thornton P, Caligaris-Cappio F, Delgado J, Montillo M, DeVos S, Moreno C, Pagel JM, Munir T, Burger JA, Chung D, Lin J, Gau L, Chang B, Cole G, Hsu E, James DF, Byrd JC. Extended follow-up and impact of high-risk prognostic factors from the phase 3 RESONATE study in patients with previously treated CLL/SLL. Leukemia. 2018 Jan; 32(1):83-91. PMID: 28592889.
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  28. Su H, Zhu G, Djaja P KI, Lin Y, Gong Y, Liu X, Li J, Liu Z, Qin X, Li L, Liu T, Lu Z, Wei M, Yan L, Winkler CA, O'Brien SJ, Li J, Xiao K, Peng T. Preoperative transcatheter arterial chemotherapy may suppress oxidative stress in hepatocellular carcinoma cells and reduce the risk of short-term relapse. Oncotarget. 2017 May 07. PMID: 28525900.
    View in: PubMed
  29. Su H, Zhu G, Djaja P KI, Lin Y, Gong Y, Liu X, Li J, Liu Z, Qin X, Li L, Liu T, Lu Z, Wei M, Yan L, Winkler CA, O'Brien SJ, Li J, Xiao K, Peng T. Preoperative transcatheter arterial chemotherapy may suppress oxidative stress in hepatocellular carcinoma cells and reduce the risk of short-term relapse. Oncotarget. 2017 Aug 15; 8(33):54402-54415. PMID: 28903351.
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  30. Xie W, Agniel D, Shevchenko A, Malov SV, Svitin A, Cherkasov N, Baum MK, Campa A, Gaseitsiwe S, Bussmann H, Makhema J, Marlink R, Novitsky V, Lee TH, Cai T, O'Brien SJ, Essex M. Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa. AIDS Res Hum Retroviruses. 2017 06; 33(6):597-609. PMID: 28132517.
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  31. Erickson BJ, Basques BA, Griffin JW, Taylor SA, O'Brien SJ, Verma NN, Romeo AA. The Effect of Concomitant Biceps Tenodesis on Reoperation Rates After Rotator Cuff Repair: A Review of a Large Private-Payer Database From 2007 to 2014. Arthroscopy. 2017 Jul; 33(7):1301-1307.e1. PMID: 28336230.
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  32. Taylor SA, Degen RM, White AE, McCarthy MM, Gulotta LV, O'Brien SJ, Werner BC. Risk Factors for Revision Surgery After Superior Labral Anterior-Posterior Repair: A National Perspective. Am J Sports Med. 2017 Jun; 45(7):1640-1644. PMID: 28282498.
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  33. Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW, Gopalapillai G, Katneni VK, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW, Lok S, Christoffels A, Orbán L. Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding. PLoS Genet. 2016 Dec; 12(12):e1006500. PMID: 27935956.
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  34. Gausden EB, Taylor SA, Ramkumar P, Nwachukwu BU, Corpus K, Rebolledo BJ, White A, O'Brien SJ. Tenotomy, Tenodesis, Transfer: A Review of Treatment Options for Biceps-Labrum Complex Disease. Am J Orthop (Belle Mead NJ). 2016 Nov/Dec; 45(7):E503-E511. PMID: 28005117.
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  35. Malov SV, Antonik A, Tang M, Berred A, Zeng Y, O'Brien SJ. Signal localization: a new approach in signal discovery. Biom J. 2017 Jan; 59(1):126-144. PMID: 27775844.
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  36. Kim S, Cho YS, Kim HM, Chung O, Kim H, Jho S, Seomun H, Kim J, Bang WY, Kim C, An J, Bae CH, Bhak Y, Jeon S, Yoon H, Kim Y, Jun J, Lee H, Cho S, Uphyrkina O, Kostyria A, Goodrich J, Miquelle D, Roelke M, Lewis J, Yurchenko A, Bankevich A, Cho J, Lee S, Edwards JS, Weber JA, Cook J, Kim S, Lee H, Manica A, Lee I, O'Brien SJ, Bhak J, Yeo JH. Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly. Genome Biol. 2016 10 11; 17(1):211. PMID: 27802837.
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  37. Mohamed Yusoff A, Tan TK, Hari R, Koepfli KP, Wee WY, Antunes A, Sitam FT, Rovie-Ryan JJ, Karuppannan KV, Wong GJ, Lipovich L, Warren WC, O'Brien SJ, Choo SW. De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin. Sci Rep. 2016 09 13; 6:28199. PMID: 27618997.
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  38. Tan TK, Tan KY, Hari R, Mohamed Yusoff A, Wong GJ, Siow CC, Mutha NV, Rayko M, Komissarov A, Dobrynin P, Krasheninnikova K, Tamazian G, Paterson IC, Warren WC, Johnson WE, O'Brien SJ, Choo SW. PGD: a pangolin genome hub for the research community. Database (Oxford). 2016; 2016. PMID: 27616775; PMCID: PMC5018392.
  39. Machado JP, Philip S, Maldonado E, O'Brien SJ, Johnson WE, Antunes A. Positive Selection Linked with Generation of Novel Mammalian Dentition Patterns. Genome Biol Evol. 2016 09 11; 8(9):2748-59. PMID: 27613398.
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  40. Bajenova O, Gorbunova A, Evsyukov I, Rayko M, Gapon S, Bozhokina E, Shishkin A, O'Brien SJ. The Genome-Wide Analysis of Carcinoembryonic Antigen Signaling by Colorectal Cancer Cells Using RNA Sequencing. PLoS One. 2016; 11(9):e0161256. PMID: 27583792; PMCID: PMC5008809.
  41. Tamazian G, Dobrynin P, Krasheninnikova K, Komissarov A, Koepfli KP, O'Brien SJ. Chromosomer: a reference-based genome arrangement tool for producing draft chromosome sequences. Gigascience. 2016 08 22; 5(1):38. PMID: 27549770.
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  42. Kuehn MH, Lipsett KA, Menotti-Raymond M, Whitmore SS, Scheetz TE, David VA, O'Brien SJ, Zhao Z, Jens JK, Snella EM, Ellinwood NM, McLellan GJ. Correction: A Mutation in LTBP2 Causes Congenital Glaucoma in Domestic Cats (Felis catus). PLoS One. 2016; 11(8):e0161517. PMID: 27537365.
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  43. Ruiz-Rodriguez CT, Ishida Y, Murray ND, O'Brien SJ, Graves JA, Greenwood AD, Roca AL. Koalas (Phascolarctos cinereus) From Queensland Are Genetically Distinct From 2 Populations in Victoria. J Hered. 2016; 107(7):573-580. PMID: 27515769.
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  44. Makunin AI, Kichigin IG, Larkin DM, O'Brien PC, Ferguson-Smith MA, Yang F, Proskuryakova AA, Vorobieva NV, Chernyaeva EN, O'Brien SJ, Graphodatsky AS, Trifonov VA. Contrasting origin of B chromosomes in two cervids (Siberian roe deer and grey brocket deer) unravelled by chromosome-specific DNA sequencing. BMC Genomics. 2016 08 11; 17(1):618. PMID: 27516089; PMCID: PMC4982142.
  45. Choo SW, Rayko M, Tan TK, Hari R, Komissarov A, Wee WY, Yurchenko AA, Kliver S, Tamazian G, Antunes A, Wilson RK, Warren WC, Koepfli KP, Minx P, Krasheninnikova K, Kotze A, Dalton DL, Vermaak E, Paterson IC, Dobrynin P, Sitam FT, Rovie-Ryan JJ, Johnson WE, Yusoff AM, Luo SJ, Karuppannan KV, Fang G, Zheng D, Gerstein MB, Lipovich L, O'Brien SJ, Wong GJ. Pangolin genomes and the evolution of mammalian scales and immunity. Genome Res. 2016 10; 26(10):1312-1322. PMID: 27510566.
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  46. Koshkin S, Danilova A, Raskin G, Petrov N, Bajenova O, O'Brien SJ, Tomilin A, Tolkunova E. Primary cultures of human colon cancer as a model to study cancer stem cells. Tumour Biol. 2016 Sep; 37(9):12833-12842. PMID: 27449036.
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  47. Taylor SA, Newman AM, Dawson C, Gallagher KA, Bowers A, Nguyen J, Fabricant PD, O'Brien SJ. The "3-Pack" Examination Is Critical for Comprehensive Evaluation of the Biceps-Labrum Complex and the Bicipital Tunnel: A Prospective Study. Arthroscopy. 2017 Jan; 33(1):28-38. PMID: 27450901.
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  48. Urch E, Taylor SA, Cody E, Fabricant PD, Burket JC, O'Brien SJ, Dines DM, Dines JS. The Quality of Open-Access Video-Based Orthopaedic Instructional Content for the Shoulder Physical Exam is Inconsistent. HSS J. 2016 Oct; 12(3):209-215. PMID: 27703413.
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  49. Taylor SA, O'Brien SJ. Regarding "Magnetic Resonance Imaging Currently Fails to Fully Evaluate the Biceps-Labrum Complex and Bicipital Tunnel". Arthroscopy. 2016 06; 32(6):957. PMID: 27263760.
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  50. Li G, Hillier LW, Grahn RA, Zimin AV, David VA, Menotti-Raymond M, Middleton R, Hannah S, Hendrickson S, Makunin A, O'Brien SJ, Minx P, Wilson RK, Lyons LA, Warren WC, Murphy WJ. A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination. G3 (Bethesda). 2016 06 01; 6(6):1607-16. PMID: 27172201; PMCID: PMC4889657.
  51. Machado JP, Johnson WE, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Antunes A. Bone-associated gene evolution and the origin of flight in birds. BMC Genomics. 2016 05 18; 17:371. PMID: 27193938; PMCID: PMC4870793.
  52. Kuehn MH, Lipsett KA, Menotti-Raymond M, Whitmore SS, Scheetz TE, David VA, O'Brien SJ, Zhao Z, Jens JK, Snella EM, Ellinwood NM, McLellan GJ. A Mutation in LTBP2 Causes Congenital Glaucoma in Domestic Cats (Felis catus). PLoS One. 2016; 11(5):e0154412. PMID: 27149523; PMCID: PMC4858209.
  53. O'Brien SJ, Koepfli KP, Eizirik E, Johnson W, Driscoll C, Antunes A, Schmidt-Kuntzel A, Marker L, Dobrynin P. Response to Comment by Faurby, Werdelin and Svenning. Genome Biol. 2016 May 05; 17:90. PMID: 27150130; PMCID: PMC4858819.
  54. Taylor SA, Ramkumar PN, Fabricant PD, Dines JS, Gausden E, White A, Conway JE, O'Brien SJ. The Clinical Impact of Bicipital Tunnel Decompression During Long Head of the Biceps Tendon Surgery: A Systematic Review and Meta-analysis. Arthroscopy. 2016 06; 32(6):1155-64. PMID: 27132781.
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  55. Brandt AL, Grigorev K, Afanador-Hernández YM, Paulino LA, Murphy WJ, Núñez A, Komissarov A, Brandt JR, Dobrynin P, Hernández-Martich JD, María R, O'Brien SJ, Rodríguez LE, Martínez-Cruzado JC, Oleksyk TK, Roca AL. Mitogenomic sequences support a north-south subspecies subdivision within Solenodon paradoxus. Mitochondrial DNA A DNA Mapp Seq Anal. 2017 09; 28(5):662-670. PMID: 27159724.
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  56. Bian C, Hu Y, Ravi V, Kuznetsova IS, Shen X, Mu X, Sun Y, You X, Li J, Li X, Qiu Y, Tay BH, Thevasagayam NM, Komissarov AS, Trifonov V, Kabilov M, Tupikin A, Luo J, Liu Y, Song H, Liu C, Wang X, Gu D, Yang Y, Li W, Polgar G, Fan G, Zeng P, Zhang H, Xiong Z, Tang Z, Peng C, Ruan Z, Yu H, Chen J, Fan M, Huang Y, Wang M, Zhao X, Hu G, Yang H, Wang J, Wang J, Xu X, Song L, Xu G, Xu P, Xu J, O'Brien SJ, Orbán L, Venkatesh B, Shi Q. The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts. Sci Rep. 2016 Apr 19; 6:24501. PMID: 27089831; PMCID: PMC4835728.
  57. Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW, Gopalapillai G, Kumar Katneni V, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW, Lok S, Christoffels A, Orbán L. Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding. PLoS Genet. 2016 Apr; 12(4):e1005954. PMID: 27082250; PMCID: PMC4833346.
  58. Almeida D, Maldonado E, Khan I, Silva L, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Johnson WE, Antunes A. Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds. Genome Biol Evol. 2016 Apr 13; 8(4):1115-31. PMID: 26979796; PMCID: PMC4860681.
  59. Corpus KT, Taylor SA, O'Brien SJ, Gulotta LV. All-Arthroscopic Modified Rotator Interval Slide for Massive Anterosuperior Cuff Tears Using the Subdeltoid Space: Surgical Technique and Early Results. HSS J. 2016 Oct; 12(3):200-208. PMID: 27703412.
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  60. Köhrer S, Havranek O, Seyfried F, Hurtz C, Coffey GP, Kim E, Ten Hacken E, Jäger U, Vanura K, O'Brien S, Thomas DA, Kantarjian H, Ghosh D, Wang Z, Zhang M, Ma W, Jumaa H, Debatin KM, Müschen M, Meyer LH, Davis RE, Burger JA. Pre-BCR signaling in precursor B-cell acute lymphoblastic leukemia regulates PI3K/AKT, FOXO1 and MYC, and can be targeted by SYK inhibition. Leukemia. 2016 06; 30(6):1246-54. PMID: 26847027.
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  61. Moore AE, Cotterill FP, Winterbach CW, Winterbach HE, Antunes A, O'Brien SJ. Genetic Evidence for Contrasting Wetland and Savannah Habitat Specializations in Different Populations of Lions (Panthera leo). J Hered. 2016 Mar; 107(2):101-3. PMID: 26695079.
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  125. Liu X, Liu S, Han MG, Zhao L, Deng H, Li J, Zhu Y, Krusin-Elbaum L, O'Brien S. Magnetoelectricity in CoFe2O4 nanocrystal-P(VDF-HFP) thin films. Nanoscale Res Lett. 2013 Sep 03; 8(1):374. PMID: 24004499; PMCID: PMC3766663.
  126. McLaren PJ, Coulonges C, Ripke S, van den Berg L, Buchbinder S, Carrington M, Cossarizza A, Dalmau J, Deeks SG, Delaneau O, De Luca A, Goedert JJ, Haas D, Herbeck JT, Kathiresan S, Kirk GD, Lambotte O, Luo M, Mallal S, van Manen D, Martinez-Picado J, Meyer L, Miro JM, Mullins JI, Obel N, O'Brien SJ, Pereyra F, Plummer FA, Poli G, Qi Y, Rucart P, Sandhu MS, Shea PR, Schuitemaker H, Theodorou I, Vannberg F, Veldink J, Walker BD, Weintrob A, Winkler CA, Wolinsky S, Telenti A, Goldstein DB, de Bakker PI, Zagury JF, Fellay J. Association study of common genetic variants and HIV-1 acquisition in 6,300 infected cases and 7,200 controls. PLoS Pathog. 2013; 9(7):e1003515. PMID: 23935489; PMCID: PMC3723635.
  127. Williams DP, O'Brien S, Doran E, Price AJ, Beard DJ, Murray DW, Beverland DE. Early postoperative predictors of satisfaction following total knee arthroplasty. Knee. 2013 Dec; 20(6):442-6. PMID: 23777807.
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  128. Nagle CM, Marquart L, Bain CJ, O'Brien S, Lahmann PH, Quinn M, Oehler MK, Obermair A, Spurdle AB, Webb PM. Impact of weight change and weight cycling on risk of different subtypes of endometrial cancer. Eur J Cancer. 2013 Aug; 49(12):2717-26. PMID: 23583438.
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  129. Neelakantan P, Gerrard G, Lucas C, Milojkovic D, May P, Wang L, Paliompeis C, Bua M, Reid A, Rezvani K, O'Brien S, Clark R, Goldman J, Marin D. Combining BCR-ABL1 transcript levels at 3 and 6 months in chronic myeloid leukemia: implications for early intervention strategies. Blood. 2013 Apr 04; 121(14):2739-42. PMID: 23380743.
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  130. Liddle AD, Pandit H, O'Brien S, Doran E, Penny ID, Hooper GJ, Burn PJ, Dodd CA, Beverland DE, Maxwell AR, Murray DW. Cementless fixation in Oxford unicompartmental knee replacement: a multicentre study of 1000 knees. Bone Joint J. 2013 Feb; 95-B(2):181-7. PMID: 23365026.
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  131. O'Brien SJ, Hendrickson SL. Host genomic influences on HIV/AIDS. Genome Biol. 2013 Jan 31; 14(1):201. PMID: 23369251; PMCID: PMC3663097.
  132. O'Brien SJ, Taylor SA, DiPietro JR, Newman AM, Drakos MC, Voos JE. The arthroscopic "subdeltoid approach" to the anterior shoulder. J Shoulder Elbow Surg. 2013 Apr; 22(4):e6-10. PMID: 23313368.
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  133. Cho YS, Hu L, Hou H, Lee H, Xu J, Kwon S, Oh S, Kim HM, Jho S, Kim S, Shin YA, Kim BC, Kim H, Kim CU, Luo SJ, Johnson WE, Koepfli KP, Schmidt-Küntzel A, Turner JA, Marker L, Harper C, Miller SM, Jacobs W, Bertola LD, Kim TH, Lee S, Zhou Q, Jung HJ, Xu X, Gadhvi P, Xu P, Xiong Y, Luo Y, Pan S, Gou C, Chu X, Zhang J, Liu S, He J, Chen Y, Yang L, Yang Y, He J, Liu S, Wang J, Kim CH, Kwak H, Kim JS, Hwang S, Ko J, Kim CB, Kim S, Bayarlkhagva D, Paek WK, Kim SJ, O'Brien SJ, Wang J, Bhak J. The tiger genome and comparative analysis with lion and snow leopard genomes. Nat Commun. 2013; 4:2433. PMID: 24045858; PMCID: PMC3778509.
  134. O'Brien S. Straight talk with...Stephen O'Brien. Interviewed by Elie Dolgin. Nat Med. 2013 Jan; 19(1):9. PMID: 23295996.
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  135. Borges R, Johnson WE, O'Brien SJ, Vasconcelos V, Antunes A. The role of gene duplication and unconstrained selective pressures in the melanopsin gene family evolution and vertebrate circadian rhythm regulation. PLoS One. 2012; 7(12):e52413. PMID: 23285031.
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  136. Schneider A, David VA, Johnson WE, O'Brien SJ, Barsh GS, Menotti-Raymond M, Eizirik E. How the leopard hides its spots: ASIP mutations and melanism in wild cats. PLoS One. 2012; 7(12):e50386. PMID: 23251368; PMCID: PMC3520955.
  137. Tang M, Lautenberger JA, Gao X, Sezgin E, Hendrickson SL, Troyer JL, David VA, Guan L, McIntosh CE, Guo X, Zheng Y, Liao J, Deng H, Malasky M, Kessing B, Winkler CA, Carrington M, Dé The G, Zeng Y, O'Brien SJ. The principal genetic determinants for nasopharyngeal carcinoma in China involve the HLA class I antigen recognition groove. PLoS Genet. 2012; 8(11):e1003103. PMID: 23209447; PMCID: PMC3510037.
  138. O'Brien SJ. Correction: Genome empowerment for the Puerto Rican parrot - Amazona vittata. Gigascience. 2012 Nov 27; 1(1):17. PMID: 23587100; PMCID: PMC3626505.
  139. Chen Y, Kantarjian H, Pierce S, Faderl S, O'Brien S, Qiao W, Abruzzo L, de Lima M, Kebriaei P, Jabbour E, Daver N, Kadia T, Estrov Z, Garcia-Manero G, Cortes J, Ravandi F. Prognostic significance of 11q23 aberrations in adult acute myeloid leukemia and the role of allogeneic stem cell transplantation. Leukemia. 2013 Apr; 27(4):836-42. PMID: 23135353; PMCID: PMC4181539.
  140. O'Brien SJ. Genome empowerment for the Puerto Rican parrot - Amazona vittata. Gigascience. 2012 Sep 28; 1(1):13. PMID: 23587407; PMCID: PMC3626504.
  141. Kaelin CB, Xu X, Hong LZ, David VA, McGowan KA, Schmidt-Küntzel A, Roelke ME, Pino J, Pontius J, Cooper GM, Manuel H, Swanson WF, Marker L, Harper CK, van Dyk A, Yue B, Mullikin JC, Warren WC, Eizirik E, Kos L, O'Brien SJ, Barsh GS, Menotti-Raymond M. Specifying and sustaining pigmentation patterns in domestic and wild cats. Science. 2012 Sep 21; 337(6101):1536-41. PMID: 22997338; PMCID: PMC3709578.
  142. Sabbagh Y, Graciolli FG, O'Brien S, Tang W, dos Reis LM, Ryan S, Phillips L, Boulanger J, Song W, Bracken C, Liu S, Ledbetter S, Dechow P, Canziani ME, Carvalho AB, Jorgetti V, Moyses RM, Schiavi SC. Repression of osteocyte Wnt/ß-catenin signaling is an early event in the progression of renal osteodystrophy. J Bone Miner Res. 2012 Aug; 27(8):1757-72. PMID: 22492547.
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  143. Tang MZ, Li J, Cai YL, Zheng YM, Liao J, Zeng H, O'Brien S, Zeng Y. [Evaluation of computational methods for HLA three loci haplotype by compare with family-based data]. Zhonghua Shi Yan He Lin Chuang Bing Du Xue Za Zhi. 2012 Aug; 26(4):288-90. PMID: 23189847.
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  144. Philip S, Machado JP, Maldonado E, Vasconcelos V, O'Brien SJ, Johnson WE, Antunes A. Fish lateral line innovation: insights into the evolutionary genomic dynamics of a unique mechanosensory organ. Mol Biol Evol. 2012 Dec; 29(12):3887-98. PMID: 22844072; PMCID: PMC3494275.
  145. Wong PB, Wiley EO, Johnson WE, Ryder OA, O'Brien SJ, Haussler D, Koepfli KP, Houck ML, Perelman P, Mastromonaco G, Bentley AC, Venkatesh B, Zhang YP, Murphy RW. Tissue sampling methods and standards for vertebrate genomics. Gigascience. 2012 Jul 12; 1(1):8. PMID: 23587255; PMCID: PMC3626508.
  146. Wester CW, Eden SK, Shepherd BE, Bussmann H, Novitsky V, Samuels DC, Hendrickson SL, Winkler CA, O'Brien SJ, Essex M, D'Aquila RT, DeGruttola V, Marlink RG. Risk factors for symptomatic hyperlactatemia and lactic acidosis among combination antiretroviral therapy-treated adults in Botswana: results from a clinical trial. AIDS Res Hum Retroviruses. 2012 Aug; 28(8):759-65. PMID: 22540188; PMCID: PMC3399551.
  147. Marin D, Hedgley C, Clark RE, Apperley J, Foroni L, Milojkovic D, Pocock C, Goldman JM, O'Brien S. Predictive value of early molecular response in patients with chronic myeloid leukemia treated with first-line dasatinib. Blood. 2012 Jul 12; 120(2):291-4. PMID: 22645182.
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  148. Bernardi G, Wiley EO, Mansour H, Miller MR, Orti G, Haussler D, O'Brien SJ, Ryder OA, Venkatesh B. The fishes of Genome 10K. Mar Genomics. 2012 Sep; 7:3-6. PMID: 22897955.
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  149. McKie A, Baguley F, Guthrie C, Jackson C, Kirkpatrick P, Laing A, O'Brien S, Taylor R, Wimpenny P. Exploring clinical wisdom in nursing education. Nurs Ethics. 2012 Mar; 19(2):252-67. PMID: 22457385.
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  150. Limou S, Delaneau O, van Manen D, An P, Sezgin E, Le Clerc S, Coulonges C, Troyer JL, Veldink JH, van den Berg LH, Spadoni JL, Taing L, Labib T, Montes M, Delfraissy JF, Schachter F, O'Brien SJ, Buchbinder S, van Natta ML, Jabs DA, Froguel P, Schuitemaker H, Winkler CA, Zagury JF. Multicohort genomewide association study reveals a new signal of protection against HIV-1 acquisition. J Infect Dis. 2012 Apr 01; 205(7):1155-62. PMID: 22362864; PMCID: PMC3295605.
  151. O'Brien SJ, Troyer JL, Brown MA, Johnson WE, Antunes A, Roelke ME, Pecon-Slattery J. Emerging viruses in the Felidae: shifting paradigms. Viruses. 2012 02; 4(2):236-57. PMID: 22470834; PMCID: PMC3315214.
  152. Sunagar K, Johnson WE, O'Brien SJ, Vasconcelos V, Antunes A. Evolution of CRISPs associated with toxicoferan-reptilian venom and mammalian reproduction. Mol Biol Evol. 2012 Jul; 29(7):1807-22. PMID: 22319140.
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  153. Menotti-Raymond M, David VA, Weir BS, O'Brien SJ. A population genetic database of cat breeds developed in coordination with a domestic cat STR multiplex. J Forensic Sci. 2012 May; 57(3):596-601. PMID: 22268511; PMCID: PMC4688040.
  154. Lesko MM, Bouamra O, O'Brien S, Lecky F. Prognostic value of various intracranial pathologies in traumatic brain injury. Eur J Trauma Emerg Surg. 2012 Feb; 38(1):25-32. PMID: 26815669.
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  155. Machado JP, Johnson WE, O'Brien SJ, Vasconcelos V, Antunes A. Adaptive evolution of the matrix extracellular phosphoglycoprotein in mammals. BMC Evol Biol. 2011 Nov 21; 11:342. PMID: 22103247; PMCID: PMC3250972.
  156. An P, Li R, Wang JM, Yoshimura T, Takahashi M, Samudralal R, O'Brien SJ, Phair J, Goedert JJ, Kirk GD, Troyer JL, Sezgin E, Buchbinder SP, Donfield S, Nelson GW, Winkler CA. Role of exonic variation in chemokine receptor genes on AIDS: CCRL2 F167Y association with pneumocystis pneumonia. PLoS Genet. 2011 Oct; 7(10):e1002328. PMID: 22046140; PMCID: PMC3203199.
  157. Adam BW, Hall EM, Sternberg M, Lim TH, Flores SR, O'Brien S, Simms D, Li LX, De Jesus VR, Hannon WH. The stability of markers in dried-blood spots for recommended newborn screening disorders in the United States. Clin Biochem. 2011 Dec; 44(17-18):1445-50. PMID: 21963384; PMCID: PMC4557772.
  158. Driscoll C, Yamaguchi N, O'Brien SJ, Macdonald DW. A suite of genetic markers useful in assessing wildcat (Felis silvestris ssp.)-domestic cat (Felis silvestris catus) admixture. J Hered. 2011 Sep-Oct; 102 Suppl 1:S87-90. PMID: 21846752; PMCID: PMC3157884.
  159. O'Brien S, Broom A. The rise and fall of HIV prevalence in Zimbabwe: the social, political and economic context. Afr J AIDS Res. 2011 Sep; 10(3):281-90. PMID: 25859797.
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  160. Driscoll CA, Luo S, MacDonald D, Dinerstein E, Chestin I, Pereladova O, O'Brien SJ. Restoring tigers to the Caspian region. Science. 2011 Aug 12; 333(6044):822-3. PMID: 21835996.
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  161. Hostetler JA, Onorato DP, Bolker BM, Johnson WE, O'Brien SJ, Jansen D, Oli MK. Does genetic introgression improve female reproductive performance? A test on the endangered Florida panther. Oecologia. 2012 Jan; 168(1):289-300. PMID: 21805300.
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  162. Troyer JL, Roelke ME, Jespersen JM, Baggett N, Buckley-Beason V, MacNulty D, Craft M, Packer C, Pecon-Slattery J, O'Brien SJ. FIV diversity: FIV Ple subtype composition may influence disease outcome in African lions. Vet Immunol Immunopathol. 2011 Oct 15; 143(3-4):338-46. PMID: 21723622.
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  163. Troyer JL, Nelson GW, Lautenberger JA, Chinn L, McIntosh C, Johnson RC, Sezgin E, Kessing B, Malasky M, Hendrickson SL, Li G, Pontius J, Tang M, An P, Winkler CA, Limou S, Le Clerc S, Delaneau O, Zagury JF, Schuitemaker H, van Manen D, Bream JH, Gomperts ED, Buchbinder S, Goedert JJ, Kirk GD, O'Brien SJ. Genome-wide association study implicates PARD3B-based AIDS restriction. J Infect Dis. 2011 May 15; 203(10):1491-502. PMID: 21502085; PMCID: PMC3080910.
  164. An P, Winkler C, Guan L, O'Brien SJ, Zeng Z. A common HLA-DPA1 variant is a major determinant of hepatitis B virus clearance in Han Chinese. J Infect Dis. 2011 Apr 01; 203(7):943-7. PMID: 21402545; PMCID: PMC3068033.
  165. Shrestha B, Reed JM, Starks PT, Kaufman GE, Goldstone JV, Roelke ME, O'Brien SJ, Koepfli KP, Frank LG, Court MH. Evolution of a major drug metabolizing enzyme defect in the domestic cat and other felidae: phylogenetic timing and the role of hypercarnivory. PLoS One. 2011 Mar 28; 6(3):e18046. PMID: 21464924; PMCID: PMC3065456.
  166. Perelman P, Johnson WE, Roos C, Seuánez HN, Horvath JE, Moreira MA, Kessing B, Pontius J, Roelke M, Rumpler Y, Schneider MP, Silva A, O'Brien SJ, Pecon-Slattery J. A molecular phylogeny of living primates. PLoS Genet. 2011 Mar; 7(3):e1001342. PMID: 21436896; PMCID: PMC3060065.
  167. Sezgin E, van Natta ML, Ahuja A, Lyon A, Srivastava S, Troyer JL, O'Brien SJ, Jabs DA. Association of host genetic risk factors with the course of cytomegalovirus retinitis in patients infected with human immunodeficiency virus. Am J Ophthalmol. 2011 Jun; 151(6):999-1006.e4. PMID: 21396623.
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  168. Shah N, Decker WK, Lapushin R, Xing D, Robinson SN, Yang H, Parmar S, Tung SS, O'Brien S, Fernandez-Viña M, Shpall EJ, Wierda WG. HLA homozygosity and haplotype bias among patients with chronic lymphocytic leukemia: implications for disease control by physiological immune surveillance. Leukemia. 2011 Jun; 25(6):1036-9. PMID: 21350559.
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  169. Benson JF, Hostetler JA, Onorato DP, Johnson WE, Roelke ME, O'Brien SJ, Jansen D, Oli MK. Intentional genetic introgression influences survival of adults and subadults in a small, inbred felid population. J Anim Ecol. 2011 Sep; 80(5):958-67. PMID: 21338353.
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  170. Guo X, Zhang Y, Li J, Ma J, Wei Z, Tan W, O'Brien SJ. Strong influence of human leukocyte antigen (HLA)-DP gene variants on development of persistent chronic hepatitis B virus carriers in the Han Chinese population. Hepatology. 2011 Feb; 53(2):422-8. PMID: 21274863.
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  171. Johnson RC, Nelson GW, Troyer JL, Lautenberger JA, Kessing BD, Winkler CA, O'Brien SJ. Accounting for multiple comparisons in a genome-wide association study (GWAS). BMC Genomics. 2010 Dec 22; 11:724. PMID: 21176216; PMCID: PMC3023815.
  172. Chinn LW, Tang M, Kessing BD, Lautenberger JA, Troyer JL, Malasky MJ, McIntosh C, Kirk GD, Wolinsky SM, Buchbinder SP, Gomperts ED, Goedert JJ, O'Brien SJ. Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection. J Infect Dis. 2010 Dec 15; 202(12):1836-45. PMID: 21083371; PMCID: PMC3107555.
  173. Luo SJ, Johnson WE, O'Brien SJ. Applying molecular genetic tools to tiger conservation. Integr Zool. 2010 Dec; 5(4):351-362. PMID: 21392353.
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  174. Feeney E, O'Brien S, Scannell A, Markey A, Gibney ER. Genetic variation in taste perception: does it have a role in healthy eating? Proc Nutr Soc. 2011 Feb; 70(1):135-43. PMID: 21092367.
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  175. Alkan C, Cardone MF, Catacchio CR, Antonacci F, O'Brien SJ, Ryder OA, Purgato S, Zoli M, Della Valle G, Eichler EE, Ventura M. Genome-wide characterization of centromeric satellites from multiple mammalian genomes. Genome Res. 2011 Jan; 21(1):137-45. PMID: 21081712; PMCID: PMC3012921.
  176. Toth AP, Warren RF, Petrigliano FA, Doward DA, Cordasco FA, Altchek DW, O'Brien SJ. Thermal shrinkage for shoulder instability. HSS J. 2011 Jul; 7(2):108-14. PMID: 22754408; PMCID: PMC3145864.
  177. Hostetler JA, Onorato DP, Nichols JD, Johnson WE, Roelke ME, O'Brien SJ, Jansen D, Oli MK. Genetic Introgression and the Survival of Florida Panther Kittens. Biol Conserv. 2010 Nov 01; 143(11):2789-2796. PMID: 21113436.
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  178. Webb AR, Kift R, Durkin MT, O'Brien SJ, Vail A, Berry JL, Rhodes LE. The role of sunlight exposure in determining the vitamin D status of the U.K. white adult population. Br J Dermatol. 2010 Nov; 163(5):1050-5. PMID: 20716215.
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  179. Johnson WE, Onorato DP, Roelke ME, Land ED, Cunningham M, Belden RC, McBride R, Jansen D, Lotz M, Shindle D, Howard J, Wildt DE, Penfold LM, Hostetler JA, Oli MK, O'Brien SJ. Genetic restoration of the Florida panther. Science. 2010 Sep 24; 329(5999):1641-5. PMID: 20929847.
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  180. Hendrickson SL, Lautenberger JA, Chinn LW, Malasky M, Sezgin E, Kingsley LA, Goedert JJ, Kirk GD, Gomperts ED, Buchbinder SP, Troyer JL, O'Brien SJ. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. PLoS One. 2010 Sep 21; 5(9):e12862. PMID: 20877624; PMCID: PMC2943476.
  181. Bedi A, Dines J, Dines DM, Kelly BT, O'Brien SJ, Altchek DW, Allen AA. Use of the 70° arthroscope for improved visualization with common arthroscopic procedures. Arthroscopy. 2010 Dec; 26(12):1684-96. PMID: 20855180.
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  182. da Fonseca RR, Johnson WE, O'Brien SJ, Vasconcelos V, Antunes A. Molecular evolution and the role of oxidative stress in the expansion and functional diversification of cytosolic glutathione transferases. BMC Evol Biol. 2010 Sep 15; 10:281. PMID: 20843339; PMCID: PMC2955027.
  183. Grant H, Jiang X, Stebbing J, Foroni L, Craddock C, Griffiths M, Clark RE, O'Brien S, Khorashad JS, Gerrard G, Wang L, Irving JA, Wang M, Karran L, Dyer MJ, Forrest D, Page K, Eaves CJ, Woolfson A. Analysis of BCR-ABL1 tyrosine kinase domain mutational spectra in primitive chronic myeloid leukemia cells suggests a unique mutator phenotype. Leukemia. 2010 Oct; 24(10):1817-21. PMID: 20739956.
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  184. Sezgin E, Jabs DA, Hendrickson SL, Van Natta M, Zdanov A, Lewis RA, Smith MW, Troyer JL, O'Brien SJ. Effect of host genetics on the development of cytomegalovirus retinitis in patients with AIDS. J Infect Dis. 2010 Aug 15; 202(4):606-13. PMID: 20617924.
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  185. Sezgin E, Hendrickson SL, Jabs DA, Van Natta ML, Lewis RA, Troyer JL, O'Brien SJ. Effect of host genetics on incidence of HIV neuroretinal disorder in patients with AIDS. J Acquir Immune Defic Syndr. 2010 Aug; 54(4):343-51. PMID: 20531015.
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  186. Guo X, Zeng Y, Deng H, Liao J, Zheng Y, Li J, Kessing B, O'Brien SJ. Genetic Polymorphisms of CYP2E1, GSTP1, NQO1 and MPO and the Risk of Nasopharyngeal Carcinoma in a Han Chinese Population of Southern China. BMC Res Notes. 2010 Jul 27; 3:212. PMID: 20663217; PMCID: PMC2918635.
  187. Sezgin E, Drosdak A, McIntosh C, Kessing B, Lautenberger JA, Goedert JJ, Phair JP, Troyer JL, Smith MW, O'Brien SJ. Examination of disease-based selection, demographic history and population structure in European Y-chromosome haplogroup I. J Hum Genet. 2010 Sep; 55(9):613-20. PMID: 20574427.
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  188. Mullikin JC, Hansen NF, Shen L, Ebling H, Donahue WF, Tao W, Saranga DJ, Brand A, Rubenfield MJ, Young AC, Cruz P, Driscoll C, David V, Al-Murrani SW, Locniskar MF, Abrahamsen MS, O'Brien SJ, Smith DR, Brockman JA. Light whole genome sequence for SNP discovery across domestic cat breeds. BMC Genomics. 2010 Jun 24; 11:406. PMID: 20576142; PMCID: PMC2996934.
  189. Fu X, Bei F, Wang X, O'Brien S, Lombardi JR. Excitation profile of surface-enhanced Raman scattering in graphene-metal nanoparticle based derivatives. Nanoscale. 2010 Aug; 2(8):1461-6. PMID: 20820735.
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  190. Healy B, Cooney S, O'Brien S, Iversen C, Whyte P, Nally J, Callanan JJ, Fanning S. Cronobacter (Enterobacter sakazakii): an opportunistic foodborne pathogen. Foodborne Pathog Dis. 2010 Apr; 7(4):339-50. PMID: 19958103.
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  191. Hendrickson SL, Jabs DA, Van Natta M, Lewis RA, Wallace DC, O'Brien SJ. Mitochondrial haplogroups are associated with risk of neuroretinal disorder in HIV-positive patients. J Acquir Immune Defic Syndr. 2010 Apr 01; 53(4):451-5. PMID: 20098332.
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  192. Herbeck JT, Gottlieb GS, Winkler CA, Nelson GW, An P, Maust BS, Wong KG, Troyer JL, Goedert JJ, Kessing BD, Detels R, Wolinsky SM, Martinson J, Buchbinder S, Kirk GD, Jacobson LP, Margolick JB, Kaslow RA, O'Brien SJ, Mullins JI. Multistage genomewide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS. J Infect Dis. 2010 Feb 15; 201(4):618-26. PMID: 20064070; PMCID: PMC2928718.
  193. Eizirik E, Murphy WJ, Koepfli KP, Johnson WE, Dragoo JW, Wayne RK, O'Brien SJ. Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences. Mol Phylogenet Evol. 2010 Jul; 56(1):49-63. PMID: 20138220.
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  194. Tang M, Zeng Y, Poisson A, Marti D, Guan L, Zheng Y, Deng H, Liao J, Guo X, Sun S, Nelson G, de Thé G, Winkler CA, O'Brien SJ, Carrington M, Gao X. Haplotype-dependent HLA susceptibility to nasopharyngeal carcinoma in a Southern Chinese population. Genes Immun. 2010 Jun; 11(4):334-42. PMID: 20072141; PMCID: PMC3737777.
  195. Oleksyk TK, Smith MW, O'Brien SJ. Genome-wide scans for footprints of natural selection. Philos Trans R Soc Lond B Biol Sci. 2010 Jan 12; 365(1537):185-205. PMID: 20008396; PMCID: PMC2842710.
  196. Menotti-Raymond M, Deckman KH, David V, Myrkalo J, O'Brien SJ, Narfström K. Mutation discovered in a feline model of human congenital retinal blinding disease. Invest Ophthalmol Vis Sci. 2010 Jun; 51(6):2852-9. PMID: 20053974; PMCID: PMC2891453.
  197. Drakos MC, Hillstrom H, Voos JE, Miller AN, Kraszewski AP, Wickiewicz TL, Warren RF, Allen AA, O'Brien SJ. The effect of the shoe-surface interface in the development of anterior cruciate ligament strain. J Biomech Eng. 2010 Jan; 132(1):011003. PMID: 20524741.
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  198. Fellay J, Ge D, Shianna KV, Colombo S, Ledergerber B, Cirulli ET, Urban TJ, Zhang K, Gumbs CE, Smith JP, Castagna A, Cozzi-Lepri A, De Luca A, Easterbrook P, Günthard HF, Mallal S, Mussini C, Dalmau J, Martinez-Picado J, Miro JM, Obel N, Wolinsky SM, Martinson JJ, Detels R, Margolick JB, Jacobson LP, Descombes P, Antonarakis SE, Beckmann JS, O'Brien SJ, Letvin NL, McMichael AJ, Haynes BF, Carrington M, Feng S, Telenti A, Goldstein DB. Common genetic variation and the control of HIV-1 in humans. PLoS Genet. 2009 Dec; 5(12):e1000791. PMID: 20041166; PMCID: PMC2791220.
  199. Eizirik E, David VA, Buckley-Beason V, Roelke ME, Schäffer AA, Hannah SS, Narfström K, O'Brien SJ, Menotti-Raymond M. Defining and mapping mammalian coat pattern genes: multiple genomic regions implicated in domestic cat stripes and spots. Genetics. 2010 Jan; 184(1):267-75. PMID: 19858284; PMCID: PMC2815922.
  200. Brown MA, Munkhtsog B, Troyer JL, Ross S, Sellers R, Fine AE, Swanson WF, Roelke ME, O'Brien SJ. Feline immunodeficiency virus (FIV) in wild Pallas' cats. Vet Immunol Immunopathol. 2010 Mar 15; 134(1-2):90-5. PMID: 19926144.
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  201. Alswaidi FM, O'Brien SJ. Is there a need to include HIV, HBV and HCV viruses in the Saudi premarital screening program on the basis of their prevalence and transmission risk factors? J Epidemiol Community Health. 2010 Nov; 64(11):989-97. PMID: 19822552.
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  202. Urban TJ, Weintrob AC, Fellay J, Colombo S, Shianna KV, Gumbs C, Rotger M, Pelak K, Dang KK, Detels R, Martinson JJ, O'Brien SJ, Letvin NL, McMichael AJ, Haynes BF, Carrington M, Telenti A, Michael NL, Goldstein DB. CCL3L1 and HIV/AIDS susceptibility. Nat Med. 2009 Oct; 15(10):1110-2. PMID: 19812560; PMCID: PMC2821825.
  203. Menotti-Raymond M, David VA, Pflueger S, Roelke ME, Kehler J, O'Brien SJ, Narfström K. Widespread retinal degenerative disease mutation (rdAc) discovered among a large number of popular cat breeds. Vet J. 2010 Oct; 186(1):32-8. PMID: 19747862.
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  204. Santos FP, Faderl S, Garcia-Manero G, Koller C, Beran M, O'Brien S, Pierce S, Freireich EJ, Huang X, Borthakur G, Bueso-Ramos C, de Lima M, Keating M, Cortes J, Kantarjian H, Ravandi F. Adult acute erythroleukemia: an analysis of 91 patients treated at a single institution. Leukemia. 2009 Dec; 23(12):2275-80. PMID: 19741728; PMCID: PMC4217206.
  205. Narfström K, David V, Jarret O, Beatty J, Barrs V, Wilkie D, O'Brien S, Menotti-Raymond M. Retinal degeneration in the Abyssinian and Somali cat (rdAc): correlation between genotype and phenotype and rdAc allele frequency in two continents. Vet Ophthalmol. 2009 Sep-Oct; 12(5):285-91. PMID: 19751487.
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  206. Brown MA, Troyer JL, Pecon-Slattery J, Roelke ME, O'Brien SJ. Genetics and pathogenesis of feline infectious peritonitis virus. Emerg Infect Dis. 2009 Sep; 15(9):1445-52. PMID: 19788813; PMCID: PMC2819880.
  207. Lewin HA, Larkin DM, Pontius J, O'Brien SJ. Every genome sequence needs a good map. Genome Res. 2009 Nov; 19(11):1925-8. PMID: 19596977; PMCID: PMC2775595.
  208. Healy B, Huynh S, Mullane N, O'Brien S, Iversen C, Lehner A, Stephan R, Parker CT, Fanning S. Microarray-based comparative genomic indexing of the Cronobacter genus (Enterobacter sakazakii). Int J Food Microbiol. 2009 Dec 31; 136(2):159-64. PMID: 19664834.
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  209. O'Brien S, Healy B, Negredo C, Fanning S, Iversen C. Evaluation of a new one-step enrichment in conjunction with a chromogenic medium for the detection of Cronobacter spp. (Enterobacter sakazakii) in powdered infant formula. J Food Prot. 2009 Jul; 72(7):1472-5. PMID: 19681272.
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  210. Pontius JU, O'Brien SJ. Artifacts of the 1.9x feline genome assembly derived from the feline-specific satellite sequence. J Hered. 2009 Jul-Aug; 100 Suppl 1:S14-8. PMID: 19531733; PMCID: PMC3139362.
  211. Driscoll CA, Macdonald DW, O'Brien SJ. From wild animals to domestic pets, an evolutionary view of domestication. Proc Natl Acad Sci U S A. 2009 Jun 16; 106 Suppl 1:9971-8. PMID: 19528637; PMCID: PMC2702791.
  212. Guo X, Johnson RC, Deng H, Liao J, Guan L, Nelson GW, Tang M, Zheng Y, de The G, O'Brien SJ, Winkler CA, Zeng Y. Evaluation of nonviral risk factors for nasopharyngeal carcinoma in a high-risk population of Southern China. Int J Cancer. 2009 Jun 15; 124(12):2942-7. PMID: 19296536.
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  213. Hendrickson SL, Kingsley LA, Ruiz-Pesini E, Poole JC, Jacobson LP, Palella FJ, Bream JH, Wallace DC, O'Brien SJ. Mitochondrial DNA haplogroups influence lipoatrophy after highly active antiretroviral therapy. J Acquir Immune Defic Syndr. 2009 Jun 01; 51(2):111-6. PMID: 19339895; PMCID: PMC2742970.
  214. Driscoll CA, Clutton-Brock J, Kitchener AC, O'Brien SJ. The Taming of the cat. Genetic and archaeological findings hint that wildcats became housecats earlier--and in a different place--than previously thought. Sci Am. 2009 Jun; 300(6):68-75. PMID: 19485091.
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  215. Roelke ME, Brown MA, Troyer JL, Winterbach H, Winterbach C, Hemson G, Smith D, Johnson RC, Pecon-Slattery J, Roca AL, Alexander KA, Klein L, Martelli P, Krishnasamy K, O'Brien SJ. Pathological manifestations of feline immunodeficiency virus (FIV) infection in wild African lions. Virology. 2009 Jul 20; 390(1):1-12. PMID: 19464039.
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  216. Heffner LT, Damon LE, Larson ML, Schiller G, Stock W, Kantarjian HM, Lu B, Imperiale SM, O'Brien S. A phase II study of the tolerability and activity of weekly vincristine sulfate liposomes injection (VSLI) in adults with Philadelphia chromosome-negative (Ph-) acute lymphoblastic leukemia (ALL) in second relapse or progressing following two antileukemia treatment lines. J Clin Oncol. 2009 May 20; 27(15_suppl):7046. PMID: 27961424.
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  217. Tsimberidou AM, Wierda WG, Plunkett WK, O'Brien S, Lerner S, Smith SC, Kantarjian HM, Keating MJ. Phase I/II study of oxaliplatin, fludarabine, cytarabine, and rituximab in patients (OFAR2) with Richter's syndrome (RS), and relapsed or refractory B-cell chronic lymphocytic leukemia (CLL). J Clin Oncol. 2009 May 20; 27(15_suppl):7031. PMID: 27961393.
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  218. Pemmaraju N, Kantarjian H, Ravandi F, O'Brien S, Wierda W, Thomas D, Garcia-Manero G, Borthakur G, Pierce S, Cortes J. Acute myeloid leukemia (AML) in adolescents and young adults (AYA): The M. D. Anderson Cancer Center (MDACC) experience. J Clin Oncol. 2009 May 20; 27(15_suppl):7051. PMID: 27961415.
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  219. Menotti-Raymond M, David VA, Eizirik E, Roelke ME, Ghaffari H, O'Brien SJ. Mapping of the domestic cat "SILVER" coat color locus identifies a unique genomic location for silver in mammals. J Hered. 2009 Jul-Aug; 100 Suppl 1:S8-13. PMID: 19398491; PMCID: PMC3307065.
  220. Li X, Glaser D, Li W, Johnson WE, O'Brien SJ, Beauchamp GK, Brand JG. Analyses of sweet receptor gene (Tas1r2) and preference for sweet stimuli in species of Carnivora. J Hered. 2009 Jul-Aug; 100 Suppl 1:S90-100. PMID: 19366814; PMCID: PMC3307064.
  221. Oleksyk TK, Shrestha S, Truelove AL, Goedert JJ, Donfield SM, Phair J, Mehta S, O'Brien SJ, Smith MW. Extended IL10 haplotypes and their association with HIV progression to AIDS. Genes Immun. 2009 Jun; 10(4):309-22. PMID: 19295541; PMCID: PMC3664918.
  222. Ma W, Kantarjian H, Zhang X, Yeh CH, Zhang ZJ, Verstovsek S, O'Brien S, Giles F, Albitar M. Plasma levels of JAK2 mRNA in patients with chronic myeloproliferative diseases with and without V617F mutation: implications for prognosis and disease biology. Int J Lab Hematol. 2010 Feb; 32(1 Pt 2):95-102. PMID: 19254349.
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  223. Cooper DE, O'Brien SJ, Arnoczky SP, Warren RF. The structure and function of the coracohumeral ligament: An anatomic and microscopic study. J Shoulder Elbow Surg. 1993 Mar; 2(2):70-7. PMID: 22971672.
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  224. Warner JJ, Deng X, Warren RF, Torzilli PA, O'Brien SJ. Superoinferior translation in the intact and vented glenohumeral joint. J Shoulder Elbow Surg. 1993 Mar; 2(2):99-105. PMID: 22971676.
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  225. O'Brien S, Healy B, Negredo C, Anderson W, Fanning S, Iversen C. Prevalence of Cronobacter species (Enterobacter sakazakii) in follow-on infant formulae and infant drinks. Lett Appl Microbiol. 2009 May; 48(5):536-41. PMID: 19220739.
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  226. Schmidt-Küntzel A, Nelson G, David VA, Schäffer AA, Eizirik E, Roelke ME, Kehler JS, Hannah SS, O'Brien SJ, Menotti-Raymond M. A domestic cat X chromosome linkage map and the sex-linked orange locus: mapping of orange, multiple origins and epistasis over nonagouti. Genetics. 2009 Apr; 181(4):1415-25. PMID: 19189955; PMCID: PMC2666509.
  227. El-Sharoud WM, O'Brien S, Negredo C, Iversen C, Fanning S, Healy B. Characterization of Cronobacter recovered from dried milk and related products. BMC Microbiol. 2009 Feb 02; 9:24. PMID: 19187534; PMCID: PMC2640398.
  228. Sezgin E, Lind JM, Shrestha S, Hendrickson S, Goedert JJ, Donfield S, Kirk GD, Phair JP, Troyer JL, O'Brien SJ, Smith MW. Association of Y chromosome haplogroup I with HIV progression, and HAART outcome. Hum Genet. 2009 Apr; 125(3):281-94. PMID: 19169712; PMCID: PMC2885350.
  229. Driscoll CA, Yamaguchi N, Bar-Gal GK, Roca AL, Luo S, Macdonald DW, O'Brien SJ. Mitochondrial phylogeography illuminates the origin of the extinct caspian tiger and its relationship to the amur tiger. PLoS One. 2009; 4(1):e4125. PMID: 19142238; PMCID: PMC2624500.
  230. O'Brien SJ. Comparative genomics in vertebrates: a role for the platypus. Introduction. Reprod Fertil Dev. 2009; 21(8):vii-ix. PMID: 20092045.
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  231. O'Brien SJ. Stewardship of human biospecimens, DNA, genotype, and clinical data in the GWAS era. Annu Rev Genomics Hum Genet. 2009; 10:193-209. PMID: 19630558.
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  232. Menotti-Raymond M, David VA, Schäffer AA, Tomlin JF, Eizirik E, Phillip C, Wells D, Pontius JU, Hannah SS, O'Brien SJ. An autosomal genetic linkage map of the domestic cat, Felis silvestris catus. Genomics. 2009 Apr; 93(4):305-13. PMID: 19059333.
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  233. Gillespie IA, O'Brien SJ, Penman C, Tompkins D, Cowden J, Humphrey TJ. Demographic determinants for Campylobacter infection in England and Wales: implications for future epidemiological studies. Epidemiol Infect. 2008 Dec; 136(12):1717-25. PMID: 19000328; PMCID: PMC2870783.
  234. Hendrickson SL, Hutcheson HB, Ruiz-Pesini E, Poole JC, Lautenberger J, Sezgin E, Kingsley L, Goedert JJ, Vlahov D, Donfield S, Wallace DC, O'Brien SJ. Mitochondrial DNA haplogroups influence AIDS progression. AIDS. 2008 Nov 30; 22(18):2429-39. PMID: 19005266.
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  235. Perelman PL, Graphodatsky AS, Dragoo JW, Serdyukova NA, Stone G, Cavagna P, Menotti A, Nie W, O'Brien PC, Wang J, Burkett S, Yuki K, Roelke ME, O'Brien SJ, Yang F, Stanyon R. Chromosome painting shows that skunks (Mephitidae, Carnivora) have highly rearranged karyotypes. Chromosome Res. 2008; 16(8):1215-31. PMID: 19051045.
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  236. Antunes A, Troyer JL, Roelke ME, Pecon-Slattery J, Packer C, Winterbach C, Winterbach H, Hemson G, Frank L, Stander P, Siefert L, Driciru M, Funston PJ, Alexander KA, Prager KC, Mills G, Wildt D, Bush M, O'Brien SJ, Johnson WE. The evolutionary dynamics of the lion Panthera leo revealed by host and viral population genomics. PLoS Genet. 2008 Nov; 4(11):e1000251. PMID: 18989457; PMCID: PMC2572142.
  237. LaRue RS, Andrésdóttir V, Blanchard Y, Conticello SG, Derse D, Emerman M, Greene WC, Jónsson SR, Landau NR, Löchelt M, Malik HS, Malim MH, Münk C, O'Brien SJ, Pathak VK, Strebel K, Wain-Hobson S, Yu XF, Yuhki N, Harris RS. Guidelines for naming nonprimate APOBEC3 genes and proteins. J Virol. 2009 Jan; 83(2):494-7. PMID: 18987154; PMCID: PMC2612408.
  238. Trigo TC, Freitas TR, Kunzler G, Cardoso L, Silva JC, Johnson WE, O'Brien SJ, Bonatto SL, Eizirik E. Inter-species hybridization among Neotropical cats of the genus Leopardus, and evidence for an introgressive hybrid zone between L. geoffroyi and L. tigrinus in southern Brazil. Mol Ecol. 2008 Oct; 17(19):4317-33. PMID: 18785898.
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  239. Bennett D, Humphreys L, O'Brien S, Orr J, Beverland DE. Temporospatial parameters of hip replacement patients ten years post-operatively. Int Orthop. 2009 Oct; 33(5):1203-7. PMID: 18696063; PMCID: PMC2899116.
  240. Krause J, Unger T, Noçon A, Malaspinas AS, Kolokotronis SO, Stiller M, Soibelzon L, Spriggs H, Dear PH, Briggs AW, Bray SC, O'Brien SJ, Rabeder G, Matheus P, Cooper A, Slatkin M, Pääbo S, Hofreiter M. Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. BMC Evol Biol. 2008 Jul 28; 8:220. PMID: 18662376; PMCID: PMC2518930.
  241. Yuhki N, Mullikin JC, Beck T, Stephens R, O'Brien SJ. Sequences, annotation and single nucleotide polymorphism of the major histocompatibility complex in the domestic cat. PLoS One. 2008 Jul 16; 3(7):e2674. PMID: 18629345; PMCID: PMC2453318.
  242. Hendrickson SL, Jacobson LP, Nelson GW, Phair JP, Lautenberger J, Johnson RC, Kingsley L, Margolick JB, Detels R, Goedert JJ, O'Brien SJ. Host genetic influences on highly active antiretroviral therapy efficacy and AIDS-free survival. J Acquir Immune Defic Syndr. 2008 Jul 01; 48(3):263-71. PMID: 18391751.
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  243. Guo X, O'Brien SJ, Zeng Y, Nelson GW, Winkler CA. GSTM1 and GSTT1 gene deletions and the risk for nasopharyngeal carcinoma in Han Chinese. Cancer Epidemiol Biomarkers Prev. 2008 Jul; 17(7):1760-3. PMID: 18628429.
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  244. Cunningham MW, Brown MA, Shindle DB, Terrell SP, Hayes KA, Ferree BC, McBride RT, Blankenship EL, Jansen D, Citino SB, Roelke ME, Kiltie RA, Troyer JL, O'Brien SJ. Epizootiology and management of feline leukemia virus in the Florida puma. J Wildl Dis. 2008 Jul; 44(3):537-52. PMID: 18689639; PMCID: PMC3167064.
  245. O'Brien SJ. The platypus genome unraveled. Cell. 2008 Jun 13; 133(6):953-5. PMID: 18555772.
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  246. O'Brien SJ, Johnson W, Driscoll C, Pontius J, Pecon-Slattery J, Menotti-Raymond M. State of cat genomics. Trends Genet. 2008 Jun; 24(6):268-79. PMID: 18471926.
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  247. Truelove AL, Oleksyk TK, Shrestha S, Thio CL, Goedert JJ, Donfield SM, Kirk GD, Thomas DL, O'Brien SJ, Smith MW. Evaluation of IL10, IL19 and IL20 gene polymorphisms and chronic hepatitis B infection outcome. Int J Immunogenet. 2008 Jun; 35(3):255-64. PMID: 18479293; PMCID: PMC2874896.
  248. Chen Z, O'Brien S. Structure direction of II-VI semiconductor quantum dot binary nanoparticle superlattices by tuning radius ratio. ACS Nano. 2008 Jun; 2(6):1219-29. PMID: 19206340.
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  249. Kelly CM, Penny S, Brennan D, O'Brien S, Fagan A, Culhane AC, Jirstrom K, Ponten F, Uhlen M, Gallagher WM. Systematic validation of novel breast cancer progression-associated biomarkers via high-throughput antibody generation and application of tissue microarray technology: An initial report. J Clin Oncol. 2008 May 20; 26(15_suppl):11056. PMID: 27947649.
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  250. Luo SJ, Johnson WE, Martenson J, Antunes A, Martelli P, Uphyrkina O, Traylor-Holzer K, Smith JL, O'Brien SJ. Subspecies genetic assignments of worldwide captive tigers increase conservation value of captive populations. Curr Biol. 2008 Apr 22; 18(8):592-6. PMID: 18424146.
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  251. Nash WG, Menninger JC, Padilla-Nash HM, Stone G, Perelman PL, O'Brien SJ. The ancestral carnivore karyotype (2n = 38) lives today in ringtails. J Hered. 2008 May-Jun; 99(3):241-53. PMID: 18339652.
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  252. Oleksyk TK, Zhao K, De La Vega FM, Gilbert DA, O'Brien SJ, Smith MW. Identifying selected regions from heterozygosity and divergence using a light-coverage genomic dataset from two human populations. PLoS One. 2008 Mar 05; 3(3):e1712. PMID: 18320033.
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  253. da Fonseca RR, Johnson WE, O'Brien SJ, Ramos MJ, Antunes A. The adaptive evolution of the mammalian mitochondrial genome. BMC Genomics. 2008 Mar 04; 9:119. PMID: 18318906; PMCID: PMC2375446.
  254. Münk C, Beck T, Zielonka J, Hotz-Wagenblatt A, Chareza S, Battenberg M, Thielebein J, Cichutek K, Bravo IG, O'Brien SJ, Löchelt M, Yuhki N. Functions, structure, and read-through alternative splicing of feline APOBEC3 genes. Genome Biol. 2008; 9(3):R48. PMID: 18315870; PMCID: PMC2397500.
  255. Hultman KL, Raffo AJ, Grzenda AL, Harris PE, Brown TR, O'Brien S. Magnetic resonance imaging of major histocompatibility class II expression in the renal medulla using immunotargeted superparamagnetic iron oxide nanoparticles. ACS Nano. 2008 Mar; 2(3):477-84. PMID: 19206573.
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  256. Wu CK, Hultman KL, O'Brien S, Koberstein JT. Functional oligomers for the control and fixation of spatial organization in nanoparticle assemblies. J Am Chem Soc. 2008 Mar 19; 130(11):3516-20. PMID: 18298116.
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  257. Bennett D, Humphreys L, O'Brien S, Kelly C, Orr JF, Beverland DE. Gait kinematics of age-stratified hip replacement patients--a large scale, long-term follow-up study. Gait Posture. 2008 Aug; 28(2):194-200. PMID: 18242996.
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  258. Bennett D, Humphreys L, O'Brien S, Kelly C, Orr J, Beverland DE. Activity levels and polyethylene wear of patients 10 years post hip replacement. Clin Biomech (Bristol, Avon). 2008 Jun; 23(5):571-6. PMID: 18255208.
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  259. Pecon-Slattery J, McCracken CL, Troyer JL, VandeWoude S, Roelke M, Sondgeroth K, Winterbach C, Winterbach H, O'Brien SJ. Genomic organization, sequence divergence, and recombination of feline immunodeficiency virus from lions in the wild. BMC Genomics. 2008 Feb 05; 9:66. PMID: 18251995; PMCID: PMC2270836.
  260. Brown MA, Cunningham MW, Roca AL, Troyer JL, Johnson WE, O'Brien SJ. Genetic characterization of feline leukemia virus from Florida panthers. Emerg Infect Dis. 2008 Feb; 14(2):252-9. PMID: 18258118; PMCID: PMC2600209.
  261. Hutcheson HB, Lautenberger JA, Nelson GW, Pontius JU, Kessing BD, Winkler CA, Smith MW, Johnson R, Stephens R, Phair J, Goedert JJ, Donfield S, O'Brien SJ. Detecting AIDS restriction genes: from candidate genes to genome-wide association discovery. Vaccine. 2008 Jun 06; 26(24):2951-65. PMID: 18325640.
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  262. Troyer JL, Vandewoude S, Pecon-Slattery J, McIntosh C, Franklin S, Antunes A, Johnson W, O'Brien SJ. FIV cross-species transmission: an evolutionary prospective. Vet Immunol Immunopathol. 2008 May 15; 123(1-2):159-66. PMID: 18299153.
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  263. Pecon-Slattery J, Troyer JL, Johnson WE, O'Brien SJ. Evolution of feline immunodeficiency virus in Felidae: implications for human health and wildlife ecology. Vet Immunol Immunopathol. 2008 May 15; 123(1-2):32-44. PMID: 18359092.
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  264. Al Attar HA, Norden J, O'Brien S, Monkman AP. Improved single nucleotide polymorphisms detection using conjugated polymer/surfactant system and peptide nucleic acid. Biosens Bioelectron. 2008 May 15; 23(10):1466-72. PMID: 18296040.
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  265. Zeng Z, Guan L, An P, Sun S, O'Brien SJ, Winkler CA. A population-based study to investigate host genetic factors associated with hepatitis B infection and pathogenesis in the Chinese population. BMC Infect Dis. 2008 Jan 02; 8:1. PMID: 18171470; PMCID: PMC2238742.
  266. Napolitano C, Bennett M, Johnson WE, O'Brien SJ, Marquet PA, Barría I, Poulin E, Iriarte A. Ecological and biogeographical inferences on two sympatric and enigmatic Andean cat species using genetic identification of faecal samples. Mol Ecol. 2008 Jan; 17(2):678-90. PMID: 18205675.
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  267. Graphodatsky AS, Perelman PL, Sokolovskaya NV, Beklemisheva VR, Serdukova NA, Dobigny G, O'Brien SJ, Ferguson-Smith MA, Yang F. Phylogenomics of the dog and fox family (Canidae, Carnivora) revealed by chromosome painting. Chromosome Res. 2008; 16(1):129-43. PMID: 18293108.
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  268. McConway J, O'Brien S, Doran E, Archbold P, Beverland D. The use of a posterior lip augmentation device for a revision of recurrent dislocation after primary cemented Charnley/Charnley Elite total hip replacement: results at a mean follow-up of six years and nine months. J Bone Joint Surg Br. 2007 Dec; 89(12):1581-5. PMID: 18057356.
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  269. Chen Z, Moore J, Radtke G, Sirringhaus H, O'Brien S. Binary nanoparticle superlattices in the semiconductor-semiconductor system: CdTe and CdSe. J Am Chem Soc. 2007 Dec 19; 129(50):15702-9. PMID: 18034489.
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  270. Drakos MC, Verma NN, Gulotta LV, Potucek F, Taylor S, Fealy S, Selby RM, O'Brien SJ. Arthroscopic transfer of the long head of the biceps tendon: functional outcome and clinical results. Arthroscopy. 2008 Feb; 24(2):217-23. PMID: 18237707.
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  271. Marker LL, Pearks Wilkerson AJ, Sarno RJ, Martenson J, Breitenmoser-Würsten C, O'Brien SJ, Johnson WE. Molecular genetic insights on cheetah (Acinonyx jubatus) ecology and conservation in Namibia. J Hered. 2008 Jan-Feb; 99(1):2-13. PMID: 17982159.
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  272. Pontius JU, Mullikin JC, Smith DR, Lindblad-Toh K, Gnerre S, Clamp M, Chang J, Stephens R, Neelam B, Volfovsky N, Schäffer AA, Agarwala R, Narfström K, Murphy WJ, Giger U, Roca AL, Antunes A, Menotti-Raymond M, Yuhki N, Pecon-Slattery J, Johnson WE, Bourque G, Tesler G, O'Brien SJ. Initial sequence and comparative analysis of the cat genome. Genome Res. 2007 Nov; 17(11):1675-89. PMID: 17975172; PMCID: PMC2045150.
  273. Menotti-Raymond M, David VA, Pflueger SM, Lindblad-Toh K, Wade CM, O'Brien SJ, Johnson WE. Patterns of molecular genetic variation among cat breeds. Genomics. 2008 Jan; 91(1):1-11. PMID: 17964115.
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  274. Battaglia MJ, Cordasco FA, Hannafin JA, Rodeo SA, O'Brien SJ, Altchek DW, Cavanaugh J, Wickiewicz TL, Warren RF. Results of revision anterior cruciate ligament surgery. Am J Sports Med. 2007 Dec; 35(12):2057-66. PMID: 17932401.
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  275. Nicholl BI, Halder SL, Macfarlane GJ, Thompson DG, O'Brien S, Musleh M, McBeth J. Psychosocial risk markers for new onset irritable bowel syndrome--results of a large prospective population-based study. Pain. 2008 Jul; 137(1):147-55. PMID: 17928145; PMCID: PMC2441776.
  276. O'Brien S, Wilson RK, Hanratty BM, Thompson NW, Wallace ME, Nixon JR, Engela DW, Orr JF, Isaac GH, Beverland DE. The cemented custom femoral stem--a 10 year review. Hip Int. 2007 Oct-Dec; 17(4):194-204. PMID: 19197868.
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  277. Cummins E, Nally P, Butler F, Duffy G, O'Brien S. Development and validation of a probabilistic second-order exposure assessment model for Escherichia coli O157:H7 contamination of beef trimmings from Irish meat plants. Meat Sci. 2008 May; 79(1):139-54. PMID: 22062607.
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  278. Kehler JS, David VA, Schäffer AA, Bajema K, Eizirik E, Ryugo DK, Hannah SS, O'Brien SJ, Menotti-Raymond M. Four independent mutations in the feline fibroblast growth factor 5 gene determine the long-haired phenotype in domestic cats. J Hered. 2007 Sep-Oct; 98(6):555-66. PMID: 17767004.
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  279. Martin MP, Pascal V, Yeager M, Phair J, Kirk GD, Hoots K, O'Brien SJ, Anderson SK, Carrington M. A mutation in KIR3DS1 that results in truncation and lack of cell surface expression. Immunogenetics. 2007 Oct; 59(10):823-9. PMID: 17687550.
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  280. Yuhki N, Beck T, Stephens R, Neelam B, O'Brien SJ. Comparative genomic structure of human, dog, and cat MHC: HLA, DLA, and FLA. J Hered. 2007; 98(5):390-9. PMID: 17675392.
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  281. Coomber N, David VA, O'Brien SJ, Menotti-Raymond M. Validation of a short tandem repeat multiplex typing system for genetic individualization of domestic cat samples. Croat Med J. 2007 Aug; 48(4):547-55. PMID: 17696310; PMCID: PMC2080565.
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