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Park, Peter
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Peter Park, Ph.D.
Title
Professor of Biomedical Informatics
Institution
Harvard Medical School
Department
Biomedical Informatics
Address
HMS Department of Biomedical Informatics
Countway Library, Rm 318
10 Shattuck St
Boston MA 02115
Phone
617/432-7373
vCard
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webpage
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research activities and funding
|
selected publications
|
Overview
webpage
Park Lab
Research
research activities and funding
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can
login
to make corrections and additions.
Most Recent
|
List All
OT2OD032119
(PARK, PETER J)
Sep 17, 2021 - Sep 16, 2023
NIH
Interoperability and Collaboration with the Common Fund Data Ecosystem to Improve Utility of 4DN Data
Role: Principal Investigator
R03CA249364
(PARK, PETER J)
Jun 1, 2020 - May 31, 2022
NIH
Identification of Transposable Element Insertions in the Kids First Data
Role: Principal Investigator
U01CA200059
(PARK, PETER J)
Sep 7, 2015 - Aug 31, 2025
NIH
4D Nucleome Network Data Coordination and Integration Center
Role: Principal Investigator
U01CA198935
(PARK, PETER J)
Jun 1, 2015 - May 31, 2019
NIH
Visual Analysis of Genomic and Clinical Data from Large Patient Cohorts
Role: Principal Investigator
U01MH106883
(WALSH, CHRISTOPHER A.)
May 1, 2015 - Jan 31, 2021
NIH
1/2-Somatic mosaicism and autism spectrum disorder
Role: Principal Investigator
R01EY024230
(PARK, PETER J)
Apr 1, 2014 - Mar 31, 2018
NIH
Linking sequence and copy number variation to eye diseases by regulatory genomics
Role: Principal Investigator
RC2HL102815
(DALEY, GEORGE Q)
Sep 30, 2009 - Feb 29, 2012
NIH
Comparative phenotypic, functional, and molecular analysis of ESC and iPSC
Role: Co-Principal Investigator
RC1HG005482
(PARK, PETER J)
Sep 22, 2009 - Jun 30, 2012
NIH
Statistical methods for estimation of copy number from next-generation sequencing
Role: Principal Investigator
R01GM082798
(PARK, PETER J)
Sep 25, 2007 - Aug 31, 2012
NIH
Integrative Analysis of Multiple Genomic Data Sets
Role: Principal Investigator
K25GM067825
(PARK, PETER J)
Jun 1, 2003 - May 31, 2009
NIH
Statistical and Computational Studies of Microarray Data
Role: Principal Investigator
T32HG002295
(PARK, PETER J)
Jul 1, 2000 - Aug 31, 2023
NIH
Training in Bioinformatics and Integrative Genomics
Role: Principal Investigator
Bibliographic
selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can
login
to make corrections and additions.
Newest
|
Oldest
|
Most Cited
|
Most Discussed
|
Timeline
|
Field Summary
|
Plain Text
PMC Citations
indicate the number of times the publication was cited by articles in PubMed Central, and the
Altmetric
score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.)
Fields
are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication.
Translation
tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
Sieverling L, Hong C, Koser SD, Ginsbach P, Kleinheinz K, Hutter B, Braun DM, Cortés-Ciriano I, Xi R, Kabbe R,
Park PJ
, Eils R, Schlesner M, Brors B, Rippe K, Jones DTW, Feuerbach L. Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer. Nat Commun. 2022 Dec 08; 13(1):7574.
PMID:
36481818
; PMCID:
PMC9731961
.
Citations:
Fields:
Bio
Biology
Sci
Science
Reiff SB, Schroeder AJ, Kirli K,
Cosolo A
, Bakker C, Mercado L, Lee S,
Veit AD
, Balashov AK, Vitzthum C, Ronchetti W, Pitman KM, Johnson J, Ehmsen SR, Kerpedjiev P, Abdennur N, Imakaev M, Öztürk SU, Çamoglu U,
Mirny LA
,
Gehlenborg N
, Alver BH,
Park PJ
. Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data. Nat Commun. 2022 Nov 02; 13(1):6561.
PMID:
36323678
; PMCID:
PMC9630381
.
Citations:
Fields:
Bio
Biology
Sci
Science
Batalini F,
Gulhan DC
, Mao V, Tran A, Polak M, Xiong N,
Tayob N
,
Tung NM
, Winer EP,
Mayer EL
, Knappskog S, Lønning PE,
Matulonis UA
,
Konstantinopoulos PA
, Solit DB, Won H, Eikesdal HP,
Park PJ
,
Wulf GM
. Mutational Signature 3 Detected from Clinical Panel Sequencing is Associated with Responses to Olaparib in Breast and Ovarian Cancers. Clin Cancer Res. 2022 11 01; 28(21):4714-4723.
PMID:
36048535
; PMCID:
PMC9623231
.
Citations:
2
Fields:
Neo
Neoplasms
Translation:
Humans
Luquette LJ,
Miller MB
,
Zhou Z
,
Bohrson CL
, Zhao Y, Jin H,
Gulhan D
,
Ganz J
,
Bizzotto S
, Kirkham S, Hochepied T, Libert C, Galor A, Kim J, Lodato MA, Garaycoechea JI, Gawad C, West J,
Walsh CA
,
Park PJ
. Single-cell genome sequencing of human neurons identifies somatic point mutation and indel enrichment in regulatory elements. Nat Genet. 2022 10; 54(10):1564-1571.
PMID:
36163278
; PMCID:
PMC9833626
.
Citations:
Fields:
Gen
Genetics
Translation:
Humans
Cells
Rajurkar M,
Parikh AR
, Solovyov A, You E, Kulkarni AS, Chu C, Xu KH, Jaicks C,
Taylor MS
, Wu C, Alexander KA, Good CR, Szabolcs A, Gerstberger S, Tran AV, Xu N,
Ebright RY
, Van Seventer EE, Vo KD, Tai EC, Lu C, Joseph-Chazan J, Raabe MJ, Nieman LT, Desai N, Arora KS, Ligorio M, Thapar V, Cohen L, Garden PM,
Senussi Y
, Zheng H, Allen JN,
Blaszkowsky LS
,
Clark JW
,
Goyal L
,
Wo JY
,
Ryan DP
,
Corcoran RB
,
Deshpande V
,
Rivera MN
,
Aryee MJ
,
Hong TS
, Berger SL,
Walt DR
,
Burns KH
,
Park PJ
, Greenbaum BD, Ting DT. Reverse Transcriptase Inhibition Disrupts Repeat Element Life Cycle in Colorectal Cancer. Cancer Discov. 2022 06 02; 12(6):1462-1481.
PMID:
35320348
; PMCID:
PMC9167735
.
Citations:
Fields:
Neo
Neoplasms
Translation:
Humans
Animals
Reiff SB, Schroeder AJ, Kirli K,
Cosolo A
, Bakker C, Mercado L, Lee S,
Veit AD
, Balashov AK, Vitzthum C, Ronchetti W, Pitman KM, Johnson J, Ehmsen SR, Kerpedjiev P, Abdennur N, Imakaev M, Öztürk SU, Çamoglu U,
Mirny LA
,
Gehlenborg N
, Alver BH,
Park PJ
. The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data. Nat Commun. 2022 05 02; 13(1):2365.
PMID:
35501320
; PMCID:
PMC9061818
.
Citations:
Fields:
Bio
Biology
Sci
Science
Translation:
Cells
Jin Z, Huang W, Shen N, Li J, Wang X, Dong J,
Park PJ
, Xi R. Single-cell gene fusion detection by scFusion. Nat Commun. 2022 02 28; 13(1):1084.
PMID:
35228538
; PMCID:
PMC8885711
.
Citations:
Fields:
Bio
Biology
Sci
Science
Rigano A, Ehmsen S, Öztürk SU, Ryan J, Balashov A, Hammer M, Kirli K, Boehm U, Brown CM, Bellve K, Chambers JJ,
Cosolo A
, Coleman RA, Faklaris O, Fogarty KE, Guilbert T, Hamacher AB, Itano MS, Keeley DP, Kunis S, Lacoste J, Laude A, Ma WY, Marcello M, Montero-Llopis P, Nelson G, Nitschke R, Pimentel JA, Weidtkamp-Peters S,
Park PJ
, Alver BH, Grunwald D, Strambio-De-Castillia C. Author Correction: Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications. Nat Methods. 2022 Feb; 19(2):256.
PMID:
34952955
; PMCID:
PMC8828465
.
Citations:
Fields:
Cli
Clinical Laboratory Techniques
Lee S, Bakker C, Vitzthum C, Alver BH,
Park PJ
. Pairs and Pairix: a file format and a tool for efficient storage and retrieval for Hi-C read pairs. Bioinformatics. 2022 Jan 03.
PMID:
34978573
.
Citations:
2
Fields:
Com
Computational Biology
Cortés-Ciriano I,
Gulhan DC
,
Lee JJ
, Melloni GEM,
Park PJ
. Computational analysis of cancer genome sequencing data. Nat Rev Genet. 2022 05; 23(5):298-314.
PMID:
34880424
.
Citations:
4
Fields:
Gen
Genetics
Translation:
Humans
Rigano A, Ehmsen S, Öztürk SU, Ryan J, Balashov A, Hammer M, Kirli K, Boehm U, Brown CM, Bellve K, Chambers JJ,
Cosolo A
, Coleman RA, Faklaris O, Fogarty KE, Guilbert T, Hamacher AB, Itano MS, Keeley DP, Kunis S, Lacoste J, Laude A, Ma WY, Marcello M, Montero-Llopis P, Nelson G, Nitschke R, Pimentel JA, Weidtkamp-Peters S,
Park PJ
, Alver BH, Grunwald D, Strambio-De-Castillia C. Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications. Nat Methods. 2021 12; 18(12):1489-1495.
PMID:
34862503
; PMCID:
PMC8648560
.
Citations:
2
Fields:
Cli
Clinical Laboratory Techniques
Translation:
Humans
Animals
Cells
Borges-Monroy R, Chu C, Dias C, Choi J, Lee S, Gao Y, Shin T,
Park PJ
,
Walsh CA
, Lee EA. Whole-genome analysis reveals the contribution of non-coding de novo transposon insertions to autism spectrum disorder. Mob DNA. 2021 Nov 27; 12(1):28.
PMID:
34838103
; PMCID:
PMC8627061
.
Citations:
3
Luquette LJ
,
Park PJ
. Somatic mutation accumulation seen through a single-molecule lens. Cell Res. 2021 09; 31(9):949-950.
PMID:
34316001
; PMCID:
PMC8410831
.
Citations:
Fields:
Cel
Cell Biology
Chu C, Borges-Monroy R,
Viswanadham VV
, Lee S, Li H, Lee EA,
Park PJ
. Comprehensive identification of transposable element insertions using multiple sequencing technologies. Nat Commun. 2021 06 22; 12(1):3836.
PMID:
34158502
; PMCID:
PMC8219666
.
Citations:
9
Fields:
Bio
Biology
Sci
Science
Translation:
Humans
Cells
Roberts Kingman GA, Vyas DN, Jones FC, Brady SD, Chen HI, Reid K, Milhaven M, Bertino TS, Aguirre WE, Heins DC, von Hippel FA,
Park PJ
, Kirch M, Absher DM, Myers RM, Di Palma F, Bell MA, Kingsley DM, Veeramah KR. Predicting future from past: The genomic basis of recurrent and rapid stickleback evolution. Sci Adv. 2021 Jun; 7(25).
PMID:
34144992
.
Citations:
15
Fields:
Sci
Science
Jain D, Chu C, Alver BH, Lee S, Lee EA,
Park PJ
. HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data. Bioinformatics. 2021 05 23; 37(8):1045-1051.
PMID:
33136153
.
Citations:
2
Fields:
Com
Computational Biology
Translation:
Humans
Cells
Lonfat N, Wang S, Lee C, Garcia M, Choi J,
Park PJ
, Cepko C. Cis-regulatory dissection of cone development reveals a broad role for Otx2 and Oc transcription factors. Development. 2021 05 01; 148(9).
PMID:
33929509
; PMCID:
PMC8126413
.
Citations:
1
Fields:
Bio
Biology
Emb
Embryology
Translation:
Animals
Cells
Viktorovskaya O, Chuang J, Jain D, Reim NI, López-Rivera F, Murawska M, Spatt D, Churchman LS,
Park PJ
,
Winston F
. Essential histone chaperones collaborate to regulate transcription and chromatin integrity. Genes Dev. 2021 05 01; 35(9-10):698-712.
PMID:
33888559
.
Citations:
5
Fields:
Mol
Molecular Biology
Translation:
Animals
Cells
Rodin RE
, Dou Y, Kwon M, Sherman MA,
D'Gama AM
,
Doan RN
, Rento LM, Girskis KM,
Bohrson CL
,
Kim SN
, Nadig A,
Luquette LJ
,
Gulhan DC
,
Park PJ
,
Walsh CA
. Author Correction: The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing. Nat Neurosci. 2021 Apr; 24(4):611.
PMID:
33753946
; PMCID:
PMC8533617
.
Citations:
2
Fields:
Neu
Neurology
Wang Y, Bae T, Thorpe J, Sherman MA, Jones AG, Cho S, Daily K, Dou Y, Ganz J, Galor A, Lobon I, Pattni R, Rosenbluh C, Tomasi S, Tomasini L, Yang X, Zhou B, Akbarian S, Ball LL,
Bizzotto S
, Emery SB, Doan R, Fasching L, Jang Y, Juan D, Lizano E,
Luquette LJ
, Moldovan JB, Narurkar R, Oetjens MT,
Rodin RE
, Sekar S, Shin JH, Soriano E, Straub RE, Zhou W, Chess A, Gleeson JG, Marquès-Bonet T,
Park PJ
, Peters MA, Pevsner J,
Walsh CA
, Weinberger DR, Vaccarino FM, Moran JV, Urban AE, Kidd JM, Mills RE, Abyzov A. Comprehensive identification of somatic nucleotide variants in human brain tissue. Genome Biol. 2021 03 29; 22(1):92.
PMID:
33781308
; PMCID:
PMC8006362
.
Citations:
7
Fields:
Gen
Genetics
Translation:
Humans
Cells
Bhasin A, Bregger M, Kluk M,
Park P
, Feinglass J, Barsuk J. Exertional hypoxia in patients without resting hypoxia is an early predictor of moderate to severe COVID-19. Intern Emerg Med. 2021 11; 16(8):2097-2103.
PMID:
33770368
.
Citations:
1
Fields:
Eme
Emergency Medicine
Int
Internal Medicine
Translation:
Humans
Cook JH,
Melloni GEM
,
Gulhan DC
,
Park PJ
,
Haigis KM
. The origins and genetic interactions of KRAS mutations are allele- and tissue-specific. Nat Commun. 2021 03 22; 12(1):1808.
PMID:
33753749
.
Citations:
19
Fields:
Bio
Biology
Sci
Science
Translation:
Humans
Bizzotto S
, Dou Y,
Ganz J
,
Doan RN
, Kwon M,
Bohrson CL
,
Kim SN
, Bae T, Abyzov A,
Park PJ
,
Walsh CA
. Landmarks of human embryonic development inscribed in somatic mutations. Science. 2021 03 19; 371(6535):1249-1253.
PMID:
33737485
; PMCID:
PMC8170505
.
Citations:
16
Fields:
Sci
Science
Translation:
Humans
Cells
Robinson DCL, Ritso M,
Nelson GM
, Mokhtari Z, Nakka K, Bandukwala H,
Goldman SR
,
Park PJ
, Mounier R, Chazaud B, Brand M, Rudnicki MA,
Adelman K
, Dilworth FJ. Negative elongation factor regulates muscle progenitor expansion for efficient myofiber repair and stem cell pool repopulation. Dev Cell. 2021 04 05; 56(7):1014-1029.e7.
PMID:
33735618
.
Citations:
7
Fields:
Cel
Cell Biology
Emb
Embryology
Translation:
Animals
Cells
Färkkilä A, Rodríguez A, Oikkonen J,
Gulhan DC
, Nguyen H, Domínguez J, Ramos S,
Mills CE
, Pérez-Villatoro F, Lazaro JB, Zhou J, Clairmont CS, Moreau LA,
Park PJ
,
Sorger PK
, Hautaniemi S, Frias S,
D'Andrea AD
. Heterogeneity and Clonal Evolution of Acquired PARP Inhibitor Resistance in TP53- and BRCA1-Deficient Cells. Cancer Res. 2021 05 15; 81(10):2774-2787.
PMID:
33514515
.
Citations:
4
Fields:
Neo
Neoplasms
Translation:
Humans
Animals
Cells
Yang HW, Lee S, Yang D, Dai H, Zhang Y, Han L, Zhao S, Zhang S, Ma Y, Johnson MF, Rattray AK, Johnson TA, Wang G, Zheng S,
Carroll RS
,
Park PJ
, Johnson MD. Deletions in CWH43 cause idiopathic normal pressure hydrocephalus. EMBO Mol Med. 2021 03 05; 13(3):e13249.
PMID:
33459505
.
Citations:
10
Fields:
Mol
Molecular Biology
Translation:
Humans
Animals
Jung YL
, Kirli K, Alver BH,
Park PJ
. Resources and challenges for integrative analysis of nuclear architecture data. Curr Opin Genet Dev. 2021 04; 67:103-110.
PMID:
33450522
; PMCID:
PMC8084903
.
Citations:
1
Fields:
Gen
Genetics
Translation:
Humans
Cells
Sherman MA,
Rodin RE
, Genovese G, Dias C, Barton AR,
Mukamel RE
, Berger B,
Park PJ
,
Walsh CA
,
Loh PR
. Large mosaic copy number variations confer autism risk. Nat Neurosci. 2021 02; 24(2):197-203.
PMID:
33432194
; PMCID:
PMC7854495
.
Citations:
8
Fields:
Neu
Neurology
Translation:
Humans
Rodin RE
, Dou Y, Kwon M, Sherman MA,
D'Gama AM
,
Doan RN
, Rento LM, Girskis KM,
Bohrson CL
,
Kim SN
, Nadig A,
Luquette LJ
,
Gulhan DC
,
Park PJ
,
Walsh CA
. The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing. Nat Neurosci. 2021 02; 24(2):176-185.
PMID:
33432195
; PMCID:
PMC7983596
.
Citations:
22
Fields:
Neu
Neurology
Translation:
Humans
Cells
Kwon M, Lee S,
Berselli M
, Chu C,
Park PJ
. BamSnap: a lightweight viewer for sequencing reads in BAM files. Bioinformatics. 2021 Jan 08.
PMID:
33416869
.
Citations:
Fields:
Com
Computational Biology
Reim NI, Chuang J, Jain D, Alver BH,
Park PJ
,
Winston F
. The conserved elongation factor Spn1 is required for normal transcription, histone modifications, and splicing in Saccharomyces cerevisiae. Nucleic Acids Res. 2020 10 09; 48(18):10241-10258.
PMID:
32941642
.
Citations:
5
Fields:
Bio
Biochemistry
Translation:
Animals
Cells
Haider S,
Tyekucheva S
, Prandi D, Fox NS, Ahn J, Xu AW, Pantazi A,
Park PJ
, Laird PW, Sander C, Wang W, Demichelis F,
Loda M
, Boutros PC. Systematic Assessment of Tumor Purity and Its Clinical Implications. JCO Precis Oncol. 2020; 4.
PMID:
33015524
.
Citations:
5
Fields: