Harvard Catalyst Profiles

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Xiaoyin Xu, Ph.D.


IEEE Region 1 Technological Innovation (Academic) Award

The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. R01LM012434 (XU, XIAOYIN) Sep 6, 2016 - Aug 31, 2021
    Computer aided diagnosis of cancer metastases in the brain
    Role: Principal Investigator
  2. R01LM011415 (XU, XIAOYIN) Sep 28, 2014 - Sep 27, 2020
    A novel informatics approach to understanding complex muscle fiber phenotypes
    Role: Principal Investigator

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Zhang M, Guo Y, Lei N, Zhao Z. Wu J, Xu X, Wang Y, Gu X. International Conference on Computer Vision (ICCV). Cortical Surface Shape Analysis Based on Alexandrov Polyhedra. 2021.
  2. Zhang M, An D, Lei N, Wu J, Zhao T, Xu X, Wang Y, Gu X. International Conference on Information Processing in Medical Imaging (IPMI). Cortical Morphometry Analysis Based on Worst Transportation Theory. 2021; 163-176.
  3. Chen X, Lim-Fat MJ, Qin L, Li A, Bryant A, Bay CP, Gao L, Miskin N, Liu Z, Iorgulescu JB, Xu X, Reardon DA, Young GS. A Comparative Retrospective Study of Immunotherapy RANO Versus Standard RANO Criteria in Glioblastoma Patients Receiving Immune Checkpoint Inhibitor Therapy. Front Oncol. 2021; 11:679331. PMID: 34249718.
    Citations: 1     
  4. Zhang M, Young GS, Chen H, Li J, Qin L, McFaline-Figueroa JR, Reardon DA, Cao X, Wu X, Xu X. Deep-Learning Detection of Cancer Metastases to the Brain on MRI. J Magn Reson Imaging. 2020 10; 52(4):1227-1236. PMID: 32167652.
    Citations: 11     Fields:    Translation:Humans
  5. Han W, Qin L, Bay C, Chen X, Yu KH, Miskin N, Li A, Xu X, Young G. Deep Transfer Learning and Radiomics Feature Prediction of Survival of Patients with High-Grade Gliomas. AJNR Am J Neuroradiol. 2020 01; 41(1):40-48. PMID: 31857325.
    Citations: 21     Fields:    Translation:Humans
  6. Zhang M, Zhang C, Wu X, Cao X, Young GS, Chen H, Xu X. A neural network approach to segment brain blood vessels in digital subtraction angiography. Comput Methods Programs Biomed. 2020 Mar; 185:105159. PMID: 31710990.
    Citations:    Fields:    Translation:Humans
  7. Li T, Chen H, Zhang M, Liu S, Xia S, Cao X, Young GS, Xu X . A new design in iterative image deblurring for improved robustness and performance. Pattern Recognition. 2019; (90):134-146.
  8. Li T, Chen H, Zhang M, Liu S, Xia S, Cao X, Young GS, Xu X. A New Design in Iterative Image Deblurring for Improved Robustness and Performance. Pattern Recognit. 2019 Jun; 90:134-146. PMID: 31327876.
  9. Cao X, Li T, Li H, Xia S, Ren F, Sun Y, Xu X. A Robust Parameter-free Thresholding Method for Image Segmentation. IEEE Access. 2019; 7:3448-3458. PMID: 31328077.
    Citations: 2     
  10. Li Y, Yang Z, Wang Y, Cao X, Xu X. A neural network approach to analyze cross-sections of muscle fibers in pathological images. Comput Biol Med. 2019 01; 104:97-104. PMID: 30463027.
    Citations:    Fields:    Translation:AnimalsCells
  11. Qin L, Li X, Li A, Cheng S, Qu J, Reinshagen K, Hu J, Himes N, Lu G, Xu X, Young GS. Clinical Validation of Automatable Gaussian Normalized CBV in Brain Tumor Analysis: Superior Reproducibility and Slightly Better Association with Survival than Current Standard Manual Normal Appearing White Matter Normalization. Transl Oncol. 2018 Dec; 11(6):1398-1405. PMID: 30216765.
  12. Cao X, Xu X, Drubach L, Fahey FH. Stomach frame-count-based attenuation correction of dynamic posterior view gastric emptying scintigraphy with continuous acquisition in children. Pediatr Radiol. 2017 Nov; 47(12):1599-1607. PMID: 28685191.
    Citations:    Fields:    Translation:Humans
  13. Cao X, Xu X, Grant FD, Treves ST. Estimation of Split Renal Function With 99mTc-DMSA SPECT: Comparison Between 3D Volumetric Assessment and 2D Coronal Projection Imaging. AJR Am J Roentgenol. 2016 Dec; 207(6):1324-1328. PMID: 27623376.
    Citations: 2     Fields:    Translation:Humans
  14. Xu DW, Zhang GQ, Wang ZW, Xu XY, Liu TX. Autophagy in tumorigenesis and cancer treatment. Asian Pac J Cancer Prev. 2015; 16(6):2167-75. PMID: 25824733.
    Citations: 10     Fields:    Translation:HumansAnimals
  15. Cai H, Yang Z, Cao X, Xia W, Xu X. A new iterative triclass thresholding technique in image segmentation. IEEE Trans Image Process. 2014 Mar; 23(3):1038-46. PMID: 24474373.
    Citations: 12     Fields:    
  16. Freudiger CW, Pfannl R, Orringer DA, Saar BG, Ji M, Zeng Q, Ottoboni L, Wei Y, Ying W, Waeber C, Sims JR, De Jager PL, Sagher O, Philbert MA, Xu X, Kesari S, Xie XS, Young GS. Multicolored stain-free histopathology with coherent Raman imaging. Lab Invest. 2012 Oct; 92(10):1492-502. PMID: 22906986.
    Citations: 42     Fields:    Translation:HumansAnimalsCells
  17. Cui K, Xu X, Zhao H, Wong ST. A quantitative study of factors affecting in vivo bioluminescence imaging. Luminescence. 2008 Sep-Oct; 23(5):292-5. PMID: 18452141.
    Citations: 18     Fields:    Translation:HumansAnimalsCells
  18. Janoos F, Mosaliganti K, Xu X, Machiraju R, Huang K, Wong ST. Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging. Med Image Anal. 2009 Feb; 13(1):167-79. PMID: 18819835.
    Citations: 13     Fields:    Translation:AnimalsCells
  19. Janoos F, Machiraju R, Xu X. Temporal Matching of Dendritic Spines in Confocal Microscopy Images of Neuronal Tissue,. Microscopic Image Analysis for Life Science Applications, Edited by J. Rittscher, R. Machiraju, and STC Wong,. 2008.
  20. Cai H, Xu X, Lu J, Lichtman J, Yung SP, Wong ST. Using nonlinear diffusion and mean shift to detect and connect cross-sections of axons in 3D optical microscopy images. Med Image Anal. 2008 Dec; 12(6):666-75. PMID: 18440853.
    Citations: 10     Fields:    Translation:AnimalsCells
  21. Young GS, Evans CL, Xu X, Kesari S, Huttner AJ, Xie SX, Wong STC. Intra-operative CARS brain tumor imaging,. Proceedings of SPIE Photonics West. 2008; 6860.
  22. Evans CL, Xu X, Kesari S, Xie XS, Wong ST, Young GS. Chemically-selective imaging of brain structures with CARS microscopy. Opt Express. 2007 Sep 17; 15(19):12076-87. PMID: 19547572.
    Citations: 58     Fields:    
  23. Wong KK, Cui K, Xu X, Kesari S, Wong STC . MR Characterization of an Experimental Invasive GBM Model. Proceedinds of Joint Annual Meeting of ISMRM-ESMRMB. 2007.
  24. Xu X, Cui K, Zhao H, Zhu J, Wong KK, Kesari S, Wong STC . Track brain tumor growth by MRI and planar bioluminescence imaging. Proceedinds of Joint Annual Meeting of ISMRM-ESMRMB. 2007.
  25. Xu X, Evans C, Young G, Chen J, Kesari S, Xie SX, Wong STC. Using coherent anti-Stokes Raman scattering (CARS) microscopy to image brain tissues. Proceedings of International Symposium on Biomedical Imaging. 2007; 480-83.
  26. Mosaliganti K, Janoos F, Xu X, Machiraju R, Huang K, Wong STC. Temporal Matching of Dendritic Spines in Confocal Microscopy Images of Neuronal Tissue Sections. In Proc. Workshop Microscopic Image Analysis with Applications in Biology. 2006; 106-113.
  27. Cai H, Xu X, Lu J, Lichtman JW, Yung SP, Wong ST. Repulsive force based snake model to segment and track neuronal axons in 3D microscopy image stacks. Neuroimage. 2006 Oct 01; 32(4):1608-20. PMID: 16861006.
    Citations: 23     Fields:    Translation:AnimalsCells
  28. Xu X, Wong STC. Optical microscopic image processing of dendritic spines morphology,. IEEE Signal Processing Magazine. 2006; 13(4):132-135.
  29. Cai H, Xu Xu, Lu J, Lichtman J, Yung SP, Wong STC. Shape-constrained repulsive snake method to segment and track neurons in 3D microscopy images. In 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro. 2006; 538-541.
  30. Xu X, Cheng J, Witt RM, Sabatini BL, Wong STC. A shape analysis method detect dendritic spine in 3D optical microscopy image. In 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro. 2006; 554-557.
  31. Xu X, Chen X, Zhu J, Liu K-Y, Zhou X, Wong STC. A computer-based system to detect dendritic spines. In IEEE International Symposium on Circuits and Systems. 2005; 4225-4228.
  32. Xu X, Miller E, Chen D, Sarhadi M. Adaptive median filter to remove impulse noise in highly corrupted images,. IEEE Trans. on Image Processing. 2004; 13(2):238-247.
  33. Li S, Lai S, Xu X, Shi J, Lacky J. Maximized Mutual Information: A Novel Approach for Brain Activation Detection in fMRI. In Proc. Intl. Soc. Mag. Reson. Med. 2004; 11:1105.
  34. Xu X, Miller E, Rappaport C. Minimum entropy regularization in frequency-wavenumber migration to localize subsurface objects,. IEEE Trans. on Geoscience and Remote Sensing. 2003; 41(8):1804-1812.
  35. Xu X, Miller E. Ground penetrating radar in subsurface sensing and signal processing techniques. Frontiers of Remote Sensing Information Processing, Edited by C.H. Chen. 2003; 1:535-554.
  36. Xu X, Miller E. Adaptive two-pass median filter to remove impulsive noise. In Proceedings. IEEE International Conference on Image Processing. 2002; 1:I-I.
  37. Xu X, Miller E. Total variation regularized velocity estimation to image subsurface reflectivity. In Sensor Array and Multichannel Signal Processing Workshop Proceedings, IEEE. 2002; 110-114.
  38. Xu X, Miller E, Rappaport C, Sower G. Subsurface object detection from moving ground penetrating radar: a statistical approach,. IEEE Trans. on Geoscience and Remote Sensing. 2002; 40(4):963-976.
  39. Xu X, Miller EL, Rappaport CM, Sower GD. IEEE Transactions on Geoscience and Remote Sensing. Statistical method to detect subsurface objects using array ground-penetrating radar data. 2002; 40(4):963-76.
  40. Xu X, Miller E. Adaptive difference of Gaussians to enhance detection of buried objects using GPR imagery. In Proceedings. International Conference on Image Processing, IEEE. 2002; 2:II-II.
  41. Xu X, Miller EL. Entropy optimized contrast stretch to enhance remote sensing imagery. In IEEE Object recognition supported by user interaction for service robots. 2002; 3:915-918.
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.