Harvard Catalyst Profiles

Contact, publication, and social network information about Harvard faculty and fellows.

Marc Lipsitch, D.Phil.

Co-Author

This page shows the publications co-authored by Marc Lipsitch and Bill Hanage.
Connection Strength

5.848
  1. Leveraging Pathogen Sequence and Contact Tracing Data to Enhance Vaccine Trials in Emerging Epidemics. Epidemiology. 2021 09 01; 32(5):698-704.
    View in: PubMed
    Score: 0.246
  2. Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae. PLoS Biol. 2020 10; 18(10):e3000878.
    View in: PubMed
    Score: 0.232
  3. Using Genetic Distance from Archived Samples for the Prediction of Antibiotic Resistance in Escherichia coli. Antimicrob Agents Chemother. 2020 04 21; 64(5).
    View in: PubMed
    Score: 0.224
  4. The Relative Impact of Community and Hospital Antibiotic Use on the Selection of Extended-spectrum Beta-lactamase-producing Escherichia coli. Clin Infect Dis. 2019 06 18; 69(1):182-188.
    View in: PubMed
    Score: 0.211
  5. Population genomics of pneumococcal carriage in Massachusetts children following introduction of PCV-13. Microb Genom. 2019 02; 5(2).
    View in: PubMed
    Score: 0.206
  6. The impact of serotype-specific vaccination on phylodynamic parameters of Streptococcus pneumoniae and the pneumococcal pan-genome. PLoS Pathog. 2018 04; 14(4):e1006966.
    View in: PubMed
    Score: 0.194
  7. Weak Epistasis May Drive Adaptation in Recombining Bacteria. Genetics. 2018 03; 208(3):1247-1260.
    View in: PubMed
    Score: 0.191
  8. Shared Genomic Variants: Identification of Transmission Routes Using Pathogen Deep-Sequence Data. Am J Epidemiol. 2017 Nov 15; 186(10):1209-1216.
    View in: PubMed
    Score: 0.189
  9. Host population structure and treatment frequency maintain balancing selection on drug resistance. J R Soc Interface. 2017 08; 14(133).
    View in: PubMed
    Score: 0.185
  10. Association of Pneumococcal Protein Antigen Serology With Age and Antigenic Profile of Colonizing Isolates. J Infect Dis. 2017 03 01; 215(5):713-722.
    View in: PubMed
    Score: 0.180
  11. Diverse evolutionary patterns of pneumococcal antigens identified by pangenome-wide immunological screening. Proc Natl Acad Sci U S A. 2017 01 17; 114(3):E357-E366.
    View in: PubMed
    Score: 0.178
  12. Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus. Genome Med. 2016 Feb 13; 8(1):18.
    View in: PubMed
    Score: 0.167
  13. Impact of Host Heterogeneity on the Efficacy of Interventions to Reduce Staphylococcus aureus Carriage. Infect Control Hosp Epidemiol. 2016 Feb; 37(2):197-204.
    View in: PubMed
    Score: 0.165
  14. Population genomic datasets describing the post-vaccine evolutionary epidemiology of Streptococcus pneumoniae. Sci Data. 2015; 2:150058.
    View in: PubMed
    Score: 0.164
  15. Estimating the hospitalization burden associated with influenza and respiratory syncytial virus in New York City, 2003-2011. Influenza Other Respir Viruses. 2015 Sep; 9(5):225-33.
    View in: PubMed
    Score: 0.162
  16. Carriage burden, multiple colonization and antibiotic pressure promote emergence of resistant vaccine escape pneumococci. Philos Trans R Soc Lond B Biol Sci. 2015 Jun 05; 370(1670):20140342.
    View in: PubMed
    Score: 0.160
  17. Identification of pneumococcal colonization determinants in the stringent response pathway facilitated by genomic diversity. BMC Genomics. 2015 May 09; 16:369.
    View in: PubMed
    Score: 0.159
  18. Selective and genetic constraints on pneumococcal serotype switching. PLoS Genet. 2015 Mar; 11(3):e1005095.
    View in: PubMed
    Score: 0.158
  19. Origin and proliferation of multiple-drug resistance in bacterial pathogens. Microbiol Mol Biol Rev. 2015 Mar; 79(1):101-16.
    View in: PubMed
    Score: 0.157
  20. Stability of the pneumococcal population structure in Massachusetts as PCV13 was introduced. BMC Infect Dis. 2015 Feb 18; 15:68.
    View in: PubMed
    Score: 0.156
  21. The distribution of pairwise genetic distances: a tool for investigating disease transmission. Genetics. 2014 Dec; 198(4):1395-404.
    View in: PubMed
    Score: 0.153
  22. Antibiotics in agriculture and the risk to human health: how worried should we be? Evol Appl. 2015 Mar; 8(3):240-7.
    View in: PubMed
    Score: 0.151
  23. Within-host bacterial diversity hinders accurate reconstruction of transmission networks from genomic distance data. PLoS Comput Biol. 2014 Mar; 10(3):e1003549.
    View in: PubMed
    Score: 0.147
  24. Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study. Lancet Infect Dis. 2014 Mar; 14(3):220-6.
    View in: PubMed
    Score: 0.145
  25. Population genomics of post-vaccine changes in pneumococcal epidemiology. Nat Genet. 2013 Jun; 45(6):656-63.
    View in: PubMed
    Score: 0.138
  26. Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen. mBio. 2013 Jan 22; 4(1):e00452-12.
    View in: PubMed
    Score: 0.135
  27. Reply to Guy et al.: Support for a bottleneck in the 2011 Escherichia coli O104:H4 outbreak in Germany. Proc Natl Acad Sci U S A. 2012 Dec 26; 109(52):E3629-30.
    View in: PubMed
    Score: 0.135
  28. Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011. Proc Natl Acad Sci U S A. 2012 Feb 21; 109(8):3065-70.
    View in: PubMed
    Score: 0.127
  29. Clonal replacement among 19A Streptococcus pneumoniae in Massachusetts, prior to 13 valent conjugate vaccination. Vaccine. 2011 Nov 08; 29(48):8877-81.
    View in: PubMed
    Score: 0.124
  30. Carried pneumococci in Massachusetts children: the contribution of clonal expansion and serotype switching. Pediatr Infect Dis J. 2011 Apr; 30(4):302-8.
    View in: PubMed
    Score: 0.119
  31. What is the mechanism for persistent coexistence of drug-susceptible and drug-resistant strains of Streptococcus pneumoniae? J R Soc Interface. 2010 Jun 06; 7(47):905-19.
    View in: PubMed
    Score: 0.109
  32. No coexistence for free: neutral null models for multistrain pathogens. Epidemics. 2009 Mar; 1(1):2-13.
    View in: PubMed
    Score: 0.101
  33. Diversity and antibiotic resistance among nonvaccine serotypes of Streptococcus pneumoniae carriage isolates in the post-heptavalent conjugate vaccine era. J Infect Dis. 2007 Feb 01; 195(3):347-52.
    View in: PubMed
    Score: 0.089
  34. Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures. ISME J. 2021 05; 15(5):1523-1538.
    View in: PubMed
    Score: 0.059
  35. Scientific consensus on the COVID-19 pandemic: we need to act now. Lancet. 2020 10 31; 396(10260):e71-e72.
    View in: PubMed
    Score: 0.058
  36. Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae. Sci Adv. 2020 May; 6(21):eaaz6137.
    View in: PubMed
    Score: 0.056
  37. Panproteome-wide analysis of antibody responses to whole cell pneumococcal vaccination. Elife. 2018 12 28; 7.
    View in: PubMed
    Score: 0.051
  38. Frequency-dependent selection in vaccine-associated pneumococcal population dynamics. Nat Ecol Evol. 2017 Dec; 1(12):1950-1960.
    View in: PubMed
    Score: 0.047
  39. Immunization, Antibiotic Use, and Pneumococcal Colonization Over a 15-Year Period. Pediatrics. 2017 Nov; 140(5).
    View in: PubMed
    Score: 0.047
  40. Pneumococcal carriage and antibiotic resistance in young children before 13-valent conjugate vaccine. Pediatr Infect Dis J. 2012 Mar; 31(3):249-54.
    View in: PubMed
    Score: 0.032
  41. Pneumococcal sequence type replacement among American Indian children: a comparison of pre- and routine-PCV7 eras. Vaccine. 2012 Mar 16; 30(13):2376-81.
    View in: PubMed
    Score: 0.031
  42. Serotype specific invasive capacity and persistent reduction in invasive pneumococcal disease. Vaccine. 2010 Dec 16; 29(2):283-8.
    View in: PubMed
    Score: 0.029
  43. Re-emergence of the type 1 pilus among Streptococcus pneumoniae isolates in Massachusetts, USA. Vaccine. 2010 Jul 05; 28(30):4842-6.
    View in: PubMed
    Score: 0.028
  44. Epidemiology and risk factors for Staphylococcus aureus colonization in children in the post-PCV7 era. BMC Infect Dis. 2009 Jul 11; 9:110.
    View in: PubMed
    Score: 0.027
  45. Continued impact of pneumococcal conjugate vaccine on carriage in young children. Pediatrics. 2009 Jul; 124(1):e1-11.
    View in: PubMed
    Score: 0.026
Connection Strength
The connection strength for co-authors is the sum of the scores for each of their shared publications.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.