Harvard Catalyst Profiles

Contact, publication, and social network information about Harvard faculty and fellows.

Bruce R. Fischl, Ph.D.

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Other Positions
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Research
research activities and funding
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
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  1. R01NS105820 (FISCHL, BRUCE) Dec 1, 2018 - Nov 30, 2023
    NIH/NINDS
    Segmenting Brain Structures for Neurological Disorders
    Role: Principal Investigator
  2. U01MH117023 (FISCHL, BRUCE) Aug 22, 2018 - May 31, 2023
    NIH/NIMH
    Imaging and Analysis Techniques to Construct a Cell Census Atlas of the Human Brain
    Role: Principal Investigator
  3. R01EB023281 (GREVE, DOUGLAS N) Sep 15, 2016 - Jun 30, 2020
    NIH/NIBIB
    Free Surfer Development, Maintenance, and Hardening
    Role: Principal Investigator
  4. R21DK108277 (FISCHL, BRUCE) Sep 20, 2015 - Aug 31, 2017
    NIH/NIDDK
    Auto Calibration and shaped insulin delivery to lower average blood glucose
    Role: Principal Investigator
  5. R44NS089090 (SCHMANSKY, NICHOLAS JOHN) Sep 15, 2015 - Aug 31, 2018
    NIH/NINDS
    MRI brain morphometry for computer-aided detection of neurological disorders
    Role: Principal Investigator
research resources
This researcher has shared information about their research resources in the eagle-i Network. To update or add resource records, contact eagle-i@hms.harvard.edu.
Martinos Center for Biomedical Imaging Core Facility (MGH) - Core services (6) and Instruments (8)

Bibliographic
selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Jog A, Hoopes A, Greve DN, Van Leemput K, Fischl B. PSACNN: Pulse sequence adaptive fast whole brain segmentation. Neuroimage. 2019 May 24; 199:553-569. PMID: 31129303.
    Citations:    
  2. Cohen MA, Dilks DD, Koldewyn K, Weigelt S, Feather J, Kell AJ, Keil B, Fischl B, Zöllei L, Wald L, Saxe R, Kanwisher N. Representational similarity precedes category selectivity in the developing ventral visual pathway. Neuroimage. 2019 Aug 15; 197:565-574. PMID: 31077844.
    Citations:    
  3. Ciesielski KTR, Stern ME, Diamond A, Khan S, Busa EA, Goldsmith TE, van der Kouwe A, Fischl B, Rosen BR. Maturational Changes in Human Dorsal and Ventral Visual Networks. Cereb Cortex. 2019 Mar 30. PMID: 30927361.
    Citations:    
  4. Frost R, Wighton P, Karahanoglu FI, Robertson RL, Grant PE, Fischl B, Tisdall MD, van der Kouwe A. Markerless high-frequency prospective motion correction for neuroanatomical MRI. Magn Reson Med. 2019 Jul; 82(1):126-144. PMID: 30821010.
    Citations:    
  5. Stewart W, Allinson K, Al-Sarraj S, Bachmeier C, Barlow K, Belli A, Burns MP, Carson A, Crawford F, Dams-O'Connor K, Diaz-Arrastia R, Dixon CE, Edlow BL, Ferguson S, Fischl B, Folkerth RD, Gentleman S, Giza CC, Grady MS, Helmy A, Herceg M, Holton JL, Howell D, Hutchinson PJ, Iacono D, Iglesias JE, Ikonomovic MD, Johnson VE, Keene CD, Kofler JK, Koliatsos VE, Lee EB, Levin H, Lifshitz J, Ling H, Loane DJ, Love S, Maas AI, Marklund N, Master CL, McElvenny DM, Meaney DF, Menon DK, Montine TJ, Mouzon B, Mufson EJ, Ojo JO, Prins M, Revesz T, Ritchie CW, Smith C, Sylvester R, Tang CY, Trojanowski JQ, Urankar K, Vink R, Wellington C, Wilde EA, Wilson L, Yeates K, Smith DH. Primum non nocere: a call for balance when reporting on CTE. Lancet Neurol. 2019 Mar; 18(3):231-233. PMID: 30784550.
    Citations:    
  6. Blazejewska AI, Fischl B, Wald LL, Polimeni JR. Intracortical smoothing of small-voxel fMRI data can provide increased detection power without spatial resolution losses compared to conventional large-voxel fMRI data. Neuroimage. 2019 04 01; 189:601-614. PMID: 30690157.
    Citations:    Fields:    
  7. Frau-Pascual A, Fogarty M, Fischl B, Yendiki A, Aganj I. Quantification of structural brain connectivity via a conductance model. Neuroimage. 2019 04 01; 189:485-496. PMID: 30677502.
    Citations:    Fields:    
  8. Magnain C, Augustinack JC, Tirrell L, Fogarty M, Frosch MP, Boas D, Fischl B, Rockland KS. Colocalization of neurons in optical coherence microscopy and Nissl-stained histology in Brodmann's area 32 and area 21. Brain Struct Funct. 2019 Jan; 224(1):351-362. PMID: 30328512.
    Citations:    Fields:    
  9. Bookheimer SY, Salat DH, Terpstra M, Ances BM, Barch DM, Buckner RL, Burgess GC, Curtiss SW, Diaz-Santos M, Elam JS, Fischl B, Greve DN, Hagy HA, Harms MP, Hatch OM, Hedden T, Hodge C, Japardi KC, Kuhn TP, Ly TK, Smith SM, Somerville LH, Ugurbil K, van der Kouwe A, Van Essen D, Woods RP, Yacoub E. The Lifespan Human Connectome Project in Aging: An overview. Neuroimage. 2019 01 15; 185:335-348. PMID: 30332613.
    Citations:    Fields:    
  10. Harms MP, Somerville LH, Ances BM, Andersson J, Barch DM, Bastiani M, Bookheimer SY, Brown TB, Buckner RL, Burgess GC, Coalson TS, Chappell MA, Dapretto M, Douaud G, Fischl B, Glasser MF, Greve DN, Hodge C, Jamison KW, Jbabdi S, Kandala S, Li X, Mair RW, Mangia S, Marcus D, Mascali D, Moeller S, Nichols TE, Robinson EC, Salat DH, Smith SM, Sotiropoulos SN, Terpstra M, Thomas KM, Tisdall MD, Ugurbil K, van der Kouwe A, Woods RP, Zöllei L, Van Essen DC, Yacoub E. Extending the Human Connectome Project across ages: Imaging protocols for the Lifespan Development and Aging projects. Neuroimage. 2018 12; 183:972-984. PMID: 30261308.
    Citations:    Fields:    
  11. Iglesias JE, Modat M, Peter L, Stevens A, Annunziata R, Vercauteren T, Lein E, Fischl B, Ourselin S. Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. Med Image Anal. 2018 12; 50:127-144. PMID: 30282061.
    Citations:    Fields:    
  12. Li Y, Barkovich MJ, Karch CM, Nillo RM, Fan CC, Broce IJ, Tan CH, Cuneo D, Hess CP, Dillon WP, Glenn OA, Glastonbury CM, Olney N, Yokoyama JS, Bonham LW, Miller B, Kao A, Schmansky N, Fischl B, Andreassen OA, Jernigan T, Dale A, Barkovich AJ, Desikan RS, Sugrue LP. Regionally specific TSC1 and TSC2 gene expression in tuberous sclerosis complex. Sci Rep. 2018 Sep 06; 8(1):13373. PMID: 30190613.
    Citations:    Fields:    
  13. Aganj I, Harisinghani MG, Weissleder R, Fischl B. Unsupervised Medical Image Segmentation Based on the Local Center of Mass. Sci Rep. 2018 Aug 29; 8(1):13012. PMID: 30158534.
    Citations:    Fields:    
  14. Iglesias JE, Insausti R, Lerma-Usabiaga G, Bocchetta M, Van Leemput K, Greve DN, van der Kouwe A, Fischl B, Caballero-Gaudes C, Paz-Alonso PM. A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. Neuroimage. 2018 12; 183:314-326. PMID: 30121337.
    Citations: 2     Fields:    
  15. Wu J, Ngo GH, Greve D, Li J, He T, Fischl B, Eickhoff SB, Yeo BTT. Accurate nonlinear mapping between MNI volumetric and FreeSurfer surface coordinate systems. Hum Brain Mapp. 2018 May 16. PMID: 29770530.
    Citations:    Fields:    
  16. Edlow BL, Keene CD, Perl DP, Iacono D, Folkerth RD, Stewart W, Mac Donald CL, Augustinack J, Diaz-Arrastia R, Estrada C, Flannery E, Gordon WA, Grabowski TJ, Hansen K, Hoffman J, Kroenke C, Larson EB, Lee P, Mareyam A, McNab JA, McPhee J, Moreau AL, Renz A, Richmire K, Stevens A, Tang CY, Tirrell LS, Trittschuh EH, van der Kouwe A, Varjabedian A, Wald LL, Wu O, Yendiki A, Young L, Zöllei L, Fischl B, Crane PK, Dams-O'Connor K. Multimodal Characterization of the Late Effects of Traumatic Brain Injury: A Methodological Overview of the Late Effects of Traumatic Brain Injury Project. J Neurotrauma. 2018 07 15; 35(14):1604-1619. PMID: 29421973.
    Citations:    Fields:    
  17. Lindemer ER, Greve DN, Fischl B, Salat DH, Gomez-Isla T. White matter abnormalities and cognition in patients with conflicting diagnoses and CSF profiles. Neurology. 2018 Apr 24; 90(17):e1461-e1469. PMID: 29572277.
    Citations:    Fields:    
  18. Fischl B, Sereno MI. Microstructural parcellation of the human brain. Neuroimage. 2018 11 15; 182:219-231. PMID: 29496612.
    Citations:    Fields:    
  19. Kenney K, Iacono D, Edlow BL, Katz DI, Diaz-Arrastia R, Dams-O'Connor K, Daneshvar DH, Stevens A, Moreau AL, Tirrell LS, Varjabedian A, Yendiki A, van der Kouwe A, Mareyam A, McNab JA, Gordon WA, Fischl B, McKee AC, Perl DP. Dementia After Moderate-Severe Traumatic Brain Injury: Coexistence of Multiple Proteinopathies. J Neuropathol Exp Neurol. 2018 Jan 01; 77(1):50-63. PMID: 29155947.
    Citations: 3     Fields:    Translation:HumansCells
  20. Greve DN, Fischl B. False positive rates in surface-based anatomical analysis. Neuroimage. 2018 05 01; 171:6-14. PMID: 29288131.
    Citations:    Fields:    Translation:Humans
  21. Belathur Suresh M, Fischl B, Salat DH. Factors influencing accuracy of cortical thickness in the diagnosis of Alzheimer's disease. Hum Brain Mapp. 2018 04; 39(4):1500-1515. PMID: 29271096.
    Citations: 1     Fields:    Translation:Humans
  22. Wang H, Magnain C, Sakadžic S, Fischl B, Boas DA. Characterizing the optical properties of human brain tissue with high numerical aperture optical coherence tomography. Biomed Opt Express. 2017 Dec 01; 8(12):5617-5636. PMID: 29296492.
    Citations: 3     
  23. Siless V, Chang K, Fischl B, Yendiki A. AnatomiCuts: Hierarchical clustering of tractography streamlines based on anatomical similarity. Neuroimage. 2018 02 01; 166:32-45. PMID: 29100937.
    Citations:    Fields:    Translation:Humans
  24. Wang H, Magnain C, Wang R, Dubb J, Varjabedian A, Tirrell LS, Stevens A, Augustinack JC, Konukoglu E, Aganj I, Frosch MP, Schmahmann JD, Fischl B, Boas DA. as-PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity. Neuroimage. 2018 01 15; 165:56-68. PMID: 29017866.
    Citations: 1     Fields:    Translation:Humans
  25. Zaretskaya N, Fischl B, Reuter M, Renvall V, Polimeni JR. Advantages of cortical surface reconstruction using submillimeter 7 T MEMPRAGE. Neuroimage. 2018 01 15; 165:11-26. PMID: 28970143.
    Citations: 1     Fields:    Translation:Humans
  26. Aganj I, Fischl B. Multimodal Image Registration through Simultaneous Segmentation. IEEE Signal Process Lett. 2017 Nov; 24(11):1661-1665. PMID: 29151777.
    Citations:    
  27. Tong T, Aganj I, Ge T, Polimeni JR, Fischl B. Functional density and edge maps: Characterizing functional architecture in individuals and improving cross-subject registration. Neuroimage. 2017 09; 158:346-355. PMID: 28716714.
    Citations: 5     Fields:    Translation:Humans
  28. Saygin ZM, Kliemann D, Iglesias JE, van der Kouwe AJW, Boyd E, Reuter M, Stevens A, Van Leemput K, McKee A, Frosch MP, Fischl B, Augustinack JC. High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas. Neuroimage. 2017 07 15; 155:370-382. PMID: 28479476.
    Citations: 7     Fields:    Translation:Humans
  29. Bianciardi M, Strong C, Toschi N, Edlow BL, Fischl B, Brown EN, Rosen BR, Wald LL. A probabilistic template of human mesopontine tegmental nuclei from in vivo 7T MRI. Neuroimage. 2018 04 15; 170:222-230. PMID: 28476663.
    Citations:    Fields:    Translation:Humans
  30. Polimeni JR, Renvall V, Zaretskaya N, Fischl B. Analysis strategies for high-resolution UHF-fMRI data. Neuroimage. 2018 03; 168:296-320. PMID: 28461062.
    Citations: 2     Fields:    Translation:Humans
  31. Koley S, Chakraborty C, Mainero C, Fischl B, Aganj I. A Fast Approach to Automatic Detection of Brain Lesions. Brainlesion. 2016; 10154:52-61. PMID: 29082383.
    Citations:    
  32. Thaker AA, Weinberg BD, Dillon WP, Hess CP, Cabral HJ, Fleischman DA, Leurgans SE, Bennett DA, Hyman BT, Albert MS, Killiany RJ, Fischl B, Dale AM, Desikan RS. Entorhinal Cortex: Antemortem Cortical Thickness and Postmortem Neurofibrillary Tangles and Amyloid Pathology. AJNR Am J Neuroradiol. 2017 May; 38(5):961-965. PMID: 28279988.
    Citations: 1     Fields:    Translation:HumansCells
  33. Yokoyama JS, Karch CM, Fan CC, Bonham LW, Kouri N, Ross OA, Rademakers R, Kim J, Wang Y, Höglinger GU, Müller U, Ferrari R, Hardy J, Momeni P, Sugrue LP, Hess CP, James Barkovich A, Boxer AL, Seeley WW, Rabinovici GD, Rosen HJ, Miller BL, Schmansky NJ, Fischl B, Hyman BT, Dickson DW, Schellenberg GD, Andreassen OA, Dale AM, Desikan RS. Shared genetic risk between corticobasal degeneration, progressive supranuclear palsy, and frontotemporal dementia. Acta Neuropathol. 2017 05; 133(5):825-837. PMID: 28271184.
    Citations: 5     Fields:    Translation:HumansCells
  34. Aganj I, Iglesias JE, Reuter M, Sabuncu MR, Fischl B. Mid-space-independent deformable image registration. Neuroimage. 2017 05 15; 152:158-170. PMID: 28242316.
    Citations: 1     Fields:    Translation:Humans
  35. Lerch JP, van der Kouwe AJ, Raznahan A, Paus T, Johansen-Berg H, Miller KL, Smith SM, Fischl B, Sotiropoulos SN. Studying neuroanatomy using MRI. Nat Neurosci. 2017 Feb 23; 20(3):314-326. PMID: 28230838.
    Citations: 9     Fields:    Translation:Humans
  36. Ding SL, Royall JJ, Sunkin SM, Ng L, Facer BA, Lesnar P, Guillozet-Bongaarts A, McMurray B, Szafer A, Dolbeare TA, Stevens A, Tirrell L, Benner T, Caldejon S, Dalley RA, Dee N, Lau C, Nyhus J, Reding M, Riley ZL, Sandman D, Shen E, van der Kouwe A, Varjabedian A, Write M, Zollei L, Dang C, Knowles JA, Koch C, Phillips JW, Sestan N, Wohnoutka P, Zielke HR, Hohmann JG, Jones AR, Bernard A, Hawrylycz MJ, Hof PR, Fischl B, LeinReference ES. Comprehensive cellular-resolution atlas of the adult human brain. J Comp Neurol. 2017 02 01; 525(2):407. PMID: 27917481.
    Citations:    Fields:    
  37. Lindemer ER, Greve DN, Fischl BR, Augustinack JC, Salat DH. Regional staging of white matter signal abnormalities in aging and Alzheimer's disease. Neuroimage Clin. 2017; 14:156-165. PMID: 28180074.
    Citations: 2     Fields:    Translation:Humans
  38. Lindemer ER, Greve DN, Fischl B, Augustinack JC, Salat DH. Differential Regional Distribution of Juxtacortical White Matter Signal Abnormalities in Aging and Alzheimer's Disease. J Alzheimers Dis. 2017; 57(1):293-303. PMID: 28222518.
    Citations: 2     Fields:    Translation:Humans
  39. Weiner KS, Barnett MA, Lorenz S, Caspers J, Stigliani A, Amunts K, Zilles K, Fischl B, Grill-Spector K. The Cytoarchitecture of Domain-specific Regions in Human High-level Visual Cortex. Cereb Cortex. 2017 01 01; 27(1):146-161. PMID: 27909003.
    Citations: 3     Fields:    Translation:Humans
  40. Ding SL, Royall JJ, Sunkin SM, Ng L, Facer BA, Lesnar P, Guillozet-Bongaarts A, McMurray B, Szafer A, Dolbeare TA, Stevens A, Tirrell L, Benner T, Caldejon S, Dalley RA, Dee N, Lau C, Nyhus J, Reding M, Riley ZL, Sandman D, Shen E, van der Kouwe A, Varjabedian A, Wright M, Zöllei L, Dang C, Knowles JA, Koch C, Phillips JW, Sestan N, Wohnoutka P, Zielke HR, Hohmann JG, Jones AR, Bernard A, Hawrylycz MJ, Hof PR, Fischl B, Lein ES. Comprehensive cellular-resolution atlas of the adult human brain. J Comp Neurol. 2016 11 01; 524(16):3127-481. PMID: 27418273.
    Citations: 13     Fields:    Translation:Humans
  41. Sabuncu MR, Ge T, Holmes AJ, Smoller JW, Buckner RL, Fischl B. Morphometricity as a measure of the neuroanatomical signature of a trait. Proc Natl Acad Sci U S A. 2016 09 27; 113(39):E5749-56. PMID: 27613854.
    Citations: 1     Fields:    Translation:Humans
  42. Iglesias JE, Van Leemput K, Augustinack J, Insausti R, Fischl B, Reuter M. Bayesian longitudinal segmentation of hippocampal substructures in brain MRI using subject-specific atlases. Neuroimage. 2016 Nov 01; 141:542-555. PMID: 27426838.
    Citations: 4     Fields:    Translation:Humans
  43. Magnain C, Wang H, Sakadžic S, Fischl B, Boas DA. En face speckle reduction in optical coherence microscopy by frequency compounding. Opt Lett. 2016 May 01; 41(9):1925-8. PMID: 27128040.
    Citations:    Fields:    
  44. Konukoglu E, Coutu JP, Salat DH, Fischl B. Multivariate statistical analysis of diffusion imaging parameters using partial least squares: Application to white matter variations in Alzheimer's disease. Neuroimage. 2016 07 01; 134:573-586. PMID: 27103138.
    Citations: 1     Fields:    Translation:Humans
  45. Ho NF, Iglesias JE, Sum MY, Kuswanto CN, Sitoh YY, De Souza J, Hong Z, Fischl B, Roffman JL, Zhou J, Sim K, Holt DJ. Progression from selective to general involvement of hippocampal subfields in schizophrenia. Mol Psychiatry. 2017 01; 22(1):142-152. PMID: 26903271.
    Citations: 12     Fields:    Translation:Humans
  46. Larvie M, Fischl B. Volumetric and fiber-tracing MRI methods for gray and white matter. Handb Clin Neurol. 2016; 135:39-60. PMID: 27432659.
    Citations:    Fields:    Translation:HumansCells
  47. Yendiki A, Reuter M, Wilkens P, Rosas HD, Fischl B. Joint reconstruction of white-matter pathways from longitudinal diffusion MRI data with anatomical priors. Neuroimage. 2016 Feb 15; 127:277-286. PMID: 26717853.
    Citations: 3     Fields:    Translation:Humans
  48. Tisdall MD, Reuter M, Qureshi A, Buckner RL, Fischl B, van der Kouwe AJW. Prospective motion correction with volumetric navigators (vNavs) reduces the bias and variance in brain morphometry induced by subject motion. Neuroimage. 2016 Feb 15; 127:11-22. PMID: 26654788.
    Citations: 13     Fields:    Translation:Humans
  49. Aganj I, Iglesias JE, Reuter M, Sabuncu MR, Fischl B. Mid-Space-Independent Symmetric Data Term for Pairwise Deformable Image Registration. Med Image Comput Comput Assist Interv. 2015 Oct; 9350:263-271. PMID: 26835520.
    Citations: 1     Fields:    
  50. Cash DM, Frost C, Iheme LO, Ünay D, Kandemir M, Fripp J, Salvado O, Bourgeat P, Reuter M, Fischl B, Lorenzi M, Frisoni GB, Pennec X, Pierson RK, Gunter JL, Senjem ML, Jack CR, Guizard N, Fonov VS, Collins DL, Modat M, Cardoso MJ, Leung KK, Wang H, Das SR, Yushkevich PA, Malone IB, Fox NC, Schott JM, Ourselin S. Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge. Neuroimage. 2015 Dec; 123:149-64. PMID: 26275383.
    Citations: 9     Fields:    Translation:Humans
  51. Ganz M, Greve DN, Fischl B, Konukoglu E. Relevant feature set estimation with a knock-out strategy and random forests. Neuroimage. 2015 Nov 15; 122:131-48. PMID: 26272728.
    Citations: 2     Fields:    Translation:Humans
  52. Boes AD, Caruso P, Duhaime AC, Fischl B. FreeSurfer is useful for early detection of Rasmussen's encephalitis prior to obvious atrophy. Dev Med Child Neurol. 2016 Feb; 58(2):209-10. PMID: 26174006.
    Citations: 2     Fields:    Translation:Humans
  53. Holmes AJ, Hollinshead MO, O'Keefe TM, Petrov VI, Fariello GR, Wald LL, Fischl B, Rosen BR, Mair RW, Roffman JL, Smoller JW, Buckner RL. Brain Genomics Superstruct Project initial data release with structural, functional, and behavioral measures. Sci Data. 2015; 2:150031. PMID: 26175908.
    Citations: 46     Fields:    Translation:Humans
  54. Lindemer ER, Salat DH, Smith EE, Nguyen K, Fischl B, Greve DN. White matter signal abnormality quality differentiates mild cognitive impairment that converts to Alzheimer's disease from nonconverters. Neurobiol Aging. 2015 Sep; 36(9):2447-57. PMID: 26095760.
    Citations: 10     Fields:    Translation:Humans
  55. Iglesias JE, Augustinack JC, Nguyen K, Player CM, Player A, Wright M, Roy N, Frosch MP, McKee AC, Wald LL, Fischl B, Van Leemput K. A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI. Neuroimage. 2015 Jul 15; 115:117-37. PMID: 25936807.
    Citations: 70     Fields:    Translation:Humans
  56. Iglesias JE, Van Leemput K, Bhatt P, Casillas C, Dutt S, Schuff N, Truran-Sacrey D, Boxer A, Fischl B. Bayesian segmentation of brainstem structures in MRI. Neuroimage. 2015 Jun; 113:184-95. PMID: 25776214.
    Citations: 6     Fields:    Translation:Humans
  57. de Macedo Rodrigues K, Ben-Avi E, Sliva DD, Choe MS, Drottar M, Wang R, Fischl B, Grant PE, Zöllei L. A FreeSurfer-compliant consistent manual segmentation of infant brains spanning the 0-2 year age range. Front Hum Neurosci. 2015; 9:21. PMID: 25741260.
    Citations: 6     
  58. Magnain C, Augustinack JC, Konukoglu E, Frosch MP, Sakadžic S, Varjabedian A, Garcia N, Wedeen VJ, Boas DA, Fischl B. Optical coherence tomography visualizes neurons in human entorhinal cortex. Neurophotonics. 2015 Feb 09; 2(1):015004. PMID: 25741528.
    Citations: 11     
  59. Hibar DP, Stein JL, Renteria ME, Arias-Vasquez A, Desrivières S, Jahanshad N, Toro R, Wittfeld K, Abramovic L, Andersson M, Aribisala BS, Armstrong NJ, Bernard M, Bohlken MM, Boks MP, Bralten J, Brown AA, Chakravarty MM, Chen Q, Ching CR, Cuellar-Partida G, den Braber A, Giddaluru S, Goldman AL, Grimm O, Guadalupe T, Hass J, Woldehawariat G, Holmes AJ, Hoogman M, Janowitz D, Jia T, Kim S, Klein M, Kraemer B, Lee PH, Olde Loohuis LM, Luciano M, Macare C, Mather KA, Mattheisen M, Milaneschi Y, Nho K, Papmeyer M, Ramasamy A, Risacher SL, Roiz-Santiañez R, Rose EJ, Salami A, Sämann PG, Schmaal L, Schork AJ, Shin J, Strike LT, Teumer A, van Donkelaar MM, van Eijk KR, Walters RK, Westlye LT, Whelan CD, Winkler AM, Zwiers MP, Alhusaini S, Athanasiu L, Ehrlich S, Hakobjan MM, Hartberg CB, Haukvik UK, Heister AJ, Hoehn D, Kasperaviciute D, Liewald DC, Lopez LM, Makkinje RR, Matarin M, Naber MA, McKay DR, Needham M, Nugent AC, Pütz B, Royle NA, Shen L, Sprooten E, Trabzuni D, van der Marel SS, van Hulzen KJ, Walton E, Wolf C, Almasy L, Ames D, Arepalli S, Assareh AA, Bastin ME, Brodaty H, Bulayeva KB, Carless MA, Cichon S, Corvin A, Curran JE, Czisch M, de Zubicaray GI, Dillman A, Duggirala R, Dyer TD, Erk S, Fedko IO, Ferrucci L, Foroud TM, Fox PT, Fukunaga M, Gibbs JR, Göring HH, Green RC, Guelfi S, Hansell NK, Hartman CA, Hegenscheid K, Heinz A, Hernandez DG, Heslenfeld DJ, Hoekstra PJ, Holsboer F, Homuth G, Hottenga JJ, Ikeda M, Jack CR, Jenkinson M, Johnson R, Kanai R, Keil M, Kent JW, Kochunov P, Kwok JB, Lawrie SM, Liu X, Longo DL, McMahon KL, Meisenzahl E, Melle I, Mohnke S, Montgomery GW, Mostert JC, Mühleisen TW, Nalls MA, Nichols TE, Nilsson LG, Nöthen MM, Ohi K, Olvera RL, Perez-Iglesias R, Pike GB, Potkin SG, Reinvang I, Reppermund S, Rietschel M, Romanczuk-Seiferth N, Rosen GD, Rujescu D, Schnell K, Schofield PR, Smith C, Steen VM, Sussmann JE, Thalamuthu A, Toga AW, Traynor BJ, Troncoso J, Turner JA, Valdés Hernández MC, van 't Ent D, van der Brug M, van der Wee NJ, van Tol MJ, Veltman DJ, Wassink TH, Westman E, Zielke RH, Zonderman AB, Ashbrook DG, Hager R, Lu L, McMahon FJ, Morris DW, Williams RW, Brunner HG, Buckner RL, Buitelaar JK, Cahn W, Calhoun VD, Cavalleri GL, Crespo-Facorro B, Dale AM, Davies GE, Delanty N, Depondt C, Djurovic S, Drevets WC, Espeseth T, Gollub RL, Ho BC, Hoffmann W, Hosten N, Kahn RS, Le Hellard S, Meyer-Lindenberg A, Müller-Myhsok B, Nauck M, Nyberg L, Pandolfo M, Penninx BW, Roffman JL, Sisodiya SM, Smoller JW, van Bokhoven H, van Haren NE, Völzke H, Walter H, Weiner MW, Wen W, White T, Agartz I, Andreassen OA, Blangero J, Boomsma DI, Brouwer RM, Cannon DM, Cookson MR, de Geus EJ, Deary IJ, Donohoe G, Fernández G, Fisher SE, Francks C, Glahn DC, Grabe HJ, Gruber O, Hardy J, Hashimoto R, Hulshoff Pol HE, Jönsson EG, Kloszewska I, Lovestone S, Mattay VS, Mecocci P, McDonald C, McIntosh AM, Ophoff RA, Paus T, Pausova Z, Ryten M, Sachdev PS, Saykin AJ, Simmons A, Singleton A, Soininen H, Wardlaw JM, Weale ME, Weinberger DR, Adams HH, Launer LJ, Seiler S, Schmidt R, Chauhan G, Satizabal CL, Becker JT, Yanek L, van der Lee SJ, Ebling M, Fischl B, Longstreth WT, Greve D, Schmidt H, Nyquist P, Vinke LN, van Duijn CM, Xue L, Mazoyer B, Bis JC, Gudnason V, Seshadri S, Ikram MA, Martin NG, Wright MJ, Schumann G, Franke B, Thompson PM, Medland SE. Common genetic variants influence human subcortical brain structures. Nature. 2015 Apr 09; 520(7546):224-9. PMID: 25607358.
    Citations: 147     Fields:    Translation:Humans
  60. Wachinger C, Golland P, Kremen W, Fischl B, Reuter M. BrainPrint: a discriminative characterization of brain morphology. Neuroimage. 2015 Apr 01; 109:232-48. PMID: 25613439.
    Citations: 11     Fields:    Translation:Humans
  61. Reuter M, Tisdall MD, Qureshi A, Buckner RL, van der Kouwe AJW, Fischl B. Head motion during MRI acquisition reduces gray matter volume and thickness estimates. Neuroimage. 2015 Feb 15; 107:107-115. PMID: 25498430.
    Citations: 51     Fields:    Translation:Humans
  62. Wachinger C, Golland P, Magnain C, Fischl B, Reuter M. Multi-modal robust inverse-consistent linear registration. Hum Brain Mapp. 2015 Apr; 36(4):1365-80. PMID: 25470798.
    Citations:    Fields:    Translation:Humans
  63. Iglesias JE, Sabuncu MR, Aganj I, Bhatt P, Casillas C, Salat D, Boxer A, Fischl B, Van Leemput K. An algorithm for optimal fusion of atlases with different labeling protocols. Neuroimage. 2015 Feb 01; 106:451-63. PMID: 25463466.
    Citations: 1     Fields:    Translation:Humans
  64. Shafee R, Buckner RL, Fischl B. Gray matter myelination of 1555 human brains using partial volume corrected MRI images. Neuroimage. 2015 Jan 15; 105:473-85. PMID: 25449739.
    Citations: 19     Fields:    Translation:HumansCells
  65. Aganj I, Reuter M, Sabuncu MR, Fischl B. Avoiding symmetry-breaking spatial non-uniformity in deformable image registration via a quasi-volume-preserving constraint. Neuroimage. 2015 Feb 01; 106:238-51. PMID: 25449738.
    Citations: 4     Fields:    Translation:Humans
  66. Augustinack JC, van der Kouwe AJ, Salat DH, Benner T, Stevens AA, Annese J, Fischl B, Frosch MP, Corkin S. H.M.'s contributions to neuroscience: a review and autopsy studies. Hippocampus. 2014 Nov; 24(11):1267-86. PMID: 25154857.
    Citations: 12     Fields:    Translation:Humans
  67. Wang H, Zhu J, Reuter M, Vinke LN, Yendiki A, Boas DA, Fischl B, Akkin T. Cross-validation of serial optical coherence scanning and diffusion tensor imaging: a study on neural fiber maps in human medulla oblongata. Neuroimage. 2014 Oct 15; 100:395-404. PMID: 24954840.
    Citations: 8     Fields:    Translation:HumansCells
  68. Sabuncu MR, Bernal-Rusiel JL, Reuter M, Greve DN, Fischl B. Event time analysis of longitudinal neuroimage data. Neuroimage. 2014 Aug 15; 97:9-18. PMID: 24736175.
    Citations: 6     Fields:    Translation:Humans
  69. Miller JA, Ding SL, Sunkin SM, Smith KA, Ng L, Szafer A, Ebbert A, Riley ZL, Royall JJ, Aiona K, Arnold JM, Bennet C, Bertagnolli D, Brouner K, Butler S, Caldejon S, Carey A, Cuhaciyan C, Dalley RA, Dee N, Dolbeare TA, Facer BA, Feng D, Fliss TP, Gee G, Goldy J, Gourley L, Gregor BW, Gu G, Howard RE, Jochim JM, Kuan CL, Lau C, Lee CK, Lee F, Lemon TA, Lesnar P, McMurray B, Mastan N, Mosqueda N, Naluai-Cecchini T, Ngo NK, Nyhus J, Oldre A, Olson E, Parente J, Parker PD, Parry SE, Stevens A, Pletikos M, Reding M, Roll K, Sandman D, Sarreal M, Shapouri S, Shapovalova NV, Shen EH, Sjoquist N, Slaughterbeck CR, Smith M, Sodt AJ, Williams D, Zöllei L, Fischl B, Gerstein MB, Geschwind DH, Glass IA, Hawrylycz MJ, Hevner RF, Huang H, Jones AR, Knowles JA, Levitt P, Phillips JW, Sestan N, Wohnoutka P, Dang C, Bernard A, Hohmann JG, Lein ES. Transcriptional landscape of the prenatal human brain. Nature. 2014 Apr 10; 508(7495):199-206. PMID: 24695229.
    Citations: 220     Fields:    Translation:HumansAnimalsCells
  70. Reuter M, Gerstner ER, Rapalino O, Batchelor TT, Rosen B, Fischl B. Impact of MRI head placement on glioma response assessment. J Neurooncol. 2014 May; 118(1):123-9. PMID: 24566765.
    Citations: 12     Fields:    Translation:Humans
  71. Vuoksimaa E, Panizzon MS, Chen CH, Fiecas M, Eyler LT, Fennema-Notestine C, Hagler DJ, Fischl B, Franz CE, Jak A, Lyons MJ, Neale MC, Rinker DA, Thompson WK, Tsuang MT, Dale AM, Kremen WS. The Genetic Association Between Neocortical Volume and General Cognitive Ability Is Driven by Global Surface Area Rather Than Thickness. Cereb Cortex. 2015 Aug; 25(8):2127-37. PMID: 24554725.
    Citations: 16     Fields:    Translation:Humans
  72. Koldewyn K, Yendiki A, Weigelt S, Gweon H, Julian J, Richardson H, Malloy C, Saxe R, Fischl B, Kanwisher N. Differences in the right inferior longitudinal fasciculus but no general disruption of white matter tracts in children with autism spectrum disorder. Proc Natl Acad Sci U S A. 2014 Feb 04; 111(5):1981-6. PMID: 24449864.
    Citations: 32     Fields:    Translation:HumansCells
  73. Greve DN, Svarer C, Fisher PM, Feng L, Hansen AE, Baare W, Rosen B, Fischl B, Knudsen GM. Cortical surface-based analysis reduces bias and variance in kinetic modeling of brain PET data. Neuroimage. 2014 May 15; 92:225-36. PMID: 24361666.
    Citations: 15     Fields:    Translation:Humans
  74. Fujimoto K, Polimeni JR, van der Kouwe AJ, Reuter M, Kober T, Benner T, Fischl B, Wald LL. Quantitative comparison of cortical surface reconstructions from MP2RAGE and multi-echo MPRAGE data at 3 and 7 T. Neuroimage. 2014 Apr 15; 90:60-73. PMID: 24345388.
    Citations: 14     Fields:    Translation:Humans
  75. Augustinack JC, van der Kouwe AJ, Fischl B. Medial temporal cortices in ex vivo magnetic resonance imaging. J Comp Neurol. 2013 Dec 15; 521(18):4177-88. PMID: 23881818.
    Citations: 4     Fields:    Translation:HumansAnimals
  76. Eyler LT, Vuoksimaa E, Panizzon MS, Fennema-Notestine C, Neale MC, Chen CH, Jak A, Franz CE, Lyons MJ, Thompson WK, Spoon KM, Fischl B, Dale AM, Kremen WS. Conceptual and data-based investigation of genetic influences and brain asymmetry: a twin study of multiple structural phenotypes. J Cogn Neurosci. 2014 May; 26(5):1100-17. PMID: 24283492.
    Citations: 13     Fields:    Translation:Humans
  77. Yendiki A, Koldewyn K, Kakunoori S, Kanwisher N, Fischl B. Spurious group differences due to head motion in a diffusion MRI study. Neuroimage. 2014 03; 88:79-90. PMID: 24269273.
    Citations: 116     Fields:    Translation:Humans
  78. Chen CH, Fiecas M, Gutiérrez ED, Panizzon MS, Eyler LT, Vuoksimaa E, Thompson WK, Fennema-Notestine C, Hagler DJ, Jernigan TL, Neale MC, Franz CE, Lyons MJ, Fischl B, Tsuang MT, Dale AM, Kremen WS. Genetic topography of brain morphology. Proc Natl Acad Sci U S A. 2013 Oct 15; 110(42):17089-94. PMID: 24082094.
    Citations: 53     Fields:    Translation:HumansCTClinical Trials
  79. Magnain C, Augustinack JC, Reuter M, Wachinger C, Frosch MP, Ragan T, Akkin T, Wedeen VJ, Boas DA, Fischl B. Blockface histology with optical coherence tomography: a comparison with Nissl staining. Neuroimage. 2014 Jan 01; 84:524-33. PMID: 24041872.
    Citations: 22     Fields:    Translation:HumansCells
  80. Saygin ZM, Norton ES, Osher DE, Beach SD, Cyr AB, Ozernov-Palchik O, Yendiki A, Fischl B, Gaab N, Gabrieli JD. Tracking the roots of reading ability: white matter volume and integrity correlate with phonological awareness in prereading and early-reading kindergarten children. J Neurosci. 2013 Aug 14; 33(33):13251-8. PMID: 23946384.
    Citations: 37     Fields:    Translation:HumansCells
  81. Ranta ME, Chen M, Crocetti D, Prince JL, Subramaniam K, Fischl B, Kaufmann WE, Mostofsky SH. Automated MRI parcellation of the frontal lobe. Hum Brain Mapp. 2014 May; 35(5):2009-26. PMID: 23897577.
    Citations: 5     Fields:    Translation:Humans
  82. Wasserthal C, Brechmann A, Stadler J, Fischl B, Engel K. Localizing the human primary auditory cortex in vivo using structural MRI. Neuroimage. 2014 Jun; 93 Pt 2:237-51. PMID: 23891882.
    Citations: 7     Fields:    Translation:HumansCells
  83. Augustinack JC, Magnain C, Reuter M, van der Kouwe AJ, Boas D, Fischl B. MRI parcellation of ex vivo medial temporal lobe. Neuroimage. 2014 Jun; 93 Pt 2:252-9. PMID: 23702414.
    Citations: 12     Fields:    Translation:Humans
  84. Bernal-Rusiel JL, Reuter M, Greve DN, Fischl B, Sabuncu MR. Spatiotemporal linear mixed effects modeling for the mass-univariate analysis of longitudinal neuroimage data. Neuroimage. 2013 Nov 01; 81:358-370. PMID: 23702413.
    Citations: 20     Fields:    Translation:Humans
  85. Glasser MF, Sotiropoulos SN, Wilson JA, Coalson TS, Fischl B, Andersson JL, Xu J, Jbabdi S, Webster M, Polimeni JR, Van Essen DC, Jenkinson M. The minimal preprocessing pipelines for the Human Connectome Project. Neuroimage. 2013 Oct 15; 80:105-24. PMID: 23668970.
    Citations: 281     Fields:    Translation:Humans
  86. Kolasinski J, Takahashi E, Stevens AA, Benner T, Fischl B, Zöllei L, Grant PE. Radial and tangential neuronal migration pathways in the human fetal brain: anatomically distinct patterns of diffusion MRI coherence. Neuroimage. 2013 Oct 01; 79:412-22. PMID: 23672769.
    Citations: 14     Fields:    Translation:HumansCells
  87. Greve DN, Van der Haegen L, Cai Q, Stufflebeam S, Sabuncu MR, Fischl B, Brysbaert M. A surface-based analysis of language lateralization and cortical asymmetry. J Cogn Neurosci. 2013 Sep; 25(9):1477-92. PMID: 23701459.
    Citations: 39     Fields:    Translation:Humans
  88. Aganj I, Reuter M, Sabuncu MR, Fischl B. SYMMETRIC NON-RIGID IMAGE REGISTRATION VIA AN ADAPTIVE QUASI-VOLUME-PRESERVING CONSTRAINT. Proc IEEE Int Symp Biomed Imaging. 2013 Apr; 2013:230-233. PMID: 25750693.
    Citations: 1     
  89. Vuoksimaa E, Panizzon MS, Chen CH, Eyler LT, Fennema-Notestine C, Fiecas MJ, Fischl B, Franz CE, Grant MD, Jak AJ, Lyons MJ, Neale MC, Thompson WK, Tsuang MT, Xian H, Dale AM, Kremen WS. Cognitive reserve moderates the association between hippocampal volume and episodic memory in middle age. Neuropsychologia. 2013 May; 51(6):1124-31. PMID: 23499725.
    Citations: 8     Fields:    Translation:Humans
  90. Iglesias JE, Konukoglu E, Zikic D, Glocker B, Van Leemput K, Fischl B. Is synthesizing MRI contrast useful for inter-modality analysis? Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):631-8. PMID: 24505720.
    Citations: 12     Fields:    Translation:Humans
  91. Konukoglu E, van der Kouwe A, Sabuncu MR, Fischl B. Example-based restoration of high-resolution magnetic resonance image acquisitions. Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):131-8. PMID: 24505658.
    Citations: 6     Fields:    Translation:Humans
  92. Bernal-Rusiel JL, Greve DN, Reuter M, Fischl B, Sabuncu MR. Statistical analysis of longitudinal neuroimage data with Linear Mixed Effects models. Neuroimage. 2013 Feb 01; 66:249-60. PMID: 23123680.
    Citations: 70     Fields:    Translation:Humans
  93. Aganj I, Yeo BT, Sabuncu MR, Fischl B. On removing interpolation and resampling artifacts in rigid image registration. IEEE Trans Image Process. 2013 Feb; 22(2):816-27. PMID: 23076044.
    Citations: 5     Fields:    Translation:Humans
  94. Augustinack JC, Huber KE, Stevens AA, Roy M, Frosch MP, van der Kouwe AJ, Wald LL, Van Leemput K, McKee AC, Fischl B. Predicting the location of human perirhinal cortex, Brodmann's area 35, from MRI. Neuroimage. 2013 Jan 01; 64:32-42. PMID: 22960087.
    Citations: 28     Fields:    Translation:Humans
  95. Eyler LT, Chen CH, Panizzon MS, Fennema-Notestine C, Neale MC, Jak A, Jernigan TL, Fischl B, Franz CE, Lyons MJ, Grant M, Prom-Wormley E, Seidman LJ, Tsuang MT, Fiecas MJ, Dale AM, Kremen WS. A comparison of heritability maps of cortical surface area and thickness and the influence of adjustment for whole brain measures: a magnetic resonance imaging twin study. Twin Res Hum Genet. 2012 Jun; 15(3):304-14. PMID: 22856366.
    Citations: 33     Fields:    Translation:Humans
  96. Cooper RJ, Caffini M, Dubb J, Fang Q, Custo A, Tsuzuki D, Fischl B, Wells W, Dan I, Boas DA. Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies. Neuroimage. 2012 Sep; 62(3):1999-2006. PMID: 22634215.
    Citations: 14     Fields:    Translation:Humans
  97. Kubarych TS, Prom-Wormley EC, Franz CE, Panizzon MS, Dale AM, Fischl B, Eyler LT, Fennema-Notestine C, Grant MD, Hauger RL, Hellhammer DH, Jak AJ, Jernigan TL, Lupien SJ, Lyons MJ, Mendoza SP, Neale MC, Seidman LJ, Tsuang MT, Kremen WS. A multivariate twin study of hippocampal volume, self-esteem and well-being in middle-aged men. Genes Brain Behav. 2012 Jul; 11(5):539-44. PMID: 22471516.
    Citations: 3     Fields:    Translation:Humans
  98. Chen CH, Gutierrez ED, Thompson W, Panizzon MS, Jernigan TL, Eyler LT, Fennema-Notestine C, Jak AJ, Neale MC, Franz CE, Lyons MJ, Grant MD, Fischl B, Seidman LJ, Tsuang MT, Kremen WS, Dale AM. Hierarchical genetic organization of human cortical surface area. Science. 2012 Mar 30; 335(6076):1634-6. PMID: 22461613.
    Citations: 79     Fields:    Translation:Humans
  99. Winkler AM, Sabuncu MR, Yeo BT, Fischl B, Greve DN, Kochunov P, Nichols TE, Blangero J, Glahn DC. Measuring and comparing brain cortical surface area and other areal quantities. Neuroimage. 2012 Jul 16; 61(4):1428-43. PMID: 22446492.
    Citations: 30     Fields:    Translation:Humans
  100. Reuter M, Schmansky NJ, Rosas HD, Fischl B. Within-subject template estimation for unbiased longitudinal image analysis. Neuroimage. 2012 Jul 16; 61(4):1402-18. PMID: 22430496.
    Citations: 346     Fields:    Translation:Humans
  101. Panizzon MS, Fennema-Notestine C, Kubarych TS, Chen CH, Eyler LT, Fischl B, Franz CE, Grant MD, Hamza S, Jak A, Jernigan TL, Lyons MJ, Neale MC, Prom-Wormley EC, Seidman L, Tsuang MT, Wu H, Xian H, Dale AM, Kremen WS. Genetic and environmental influences of white and gray matter signal contrast: a new phenotype for imaging genetics? Neuroimage. 2012 Apr 15; 60(3):1686-95. PMID: 22500923.
    Citations: 7     Fields:    Translation:HumansCells
  102. Fischl B. FreeSurfer. Neuroimage. 2012 Aug 15; 62(2):774-81. PMID: 22248573.
    Citations: 615     Fields:    Translation:Humans
  103. Schaer M, Cuadra MB, Schmansky N, Fischl B, Thiran JP, Eliez S. How to measure cortical folding from MR images: a step-by-step tutorial to compute local gyrification index. J Vis Exp. 2012 Jan 02; (59):e3417. PMID: 22230945.
    Citations: 23     Fields:    Translation:Humans