Harvard Catalyst Profiles

Contact, publication, and social network information about Harvard faculty and fellows.

Bruce R. Fischl, Ph.D.

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Other Positions
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Research
research activities and funding
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
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  1. RF1MH123195 (IGLESIAS GONZALEZ, JUAN EUGENIO) Aug 1, 2020 - Jul 31, 2023
    NIH
    Open-source software for multi-scale mapping of the human brain
    Role: Co-Principal Investigator
  2. R01AG064027 (FISCHL, BRUCE) Apr 15, 2020 - Mar 31, 2025
    NIH
    Deep Learning Algorithms for FreeSurfer
    Role: Principal Investigator
  3. R56AG064027 (FISCHL, BRUCE) Aug 1, 2019 - Apr 14, 2020
    NIH
    Deep Learning Algorithms for FreeSurfer
    Role: Principal Investigator
  4. R42AG062026 (WIGHTON, PAUL) Jul 1, 2019 - Aug 14, 2020
    NIH
    Unbiased longitudinal neuromorphometry for clinical decision support
    Role: Co-Principal Investigator
  5. R01NS105820 (FISCHL, BRUCE) Dec 1, 2018 - Nov 30, 2023
    NIH
    Segmenting Brain Structures for Neurological Disorders
    Role: Principal Investigator

Bibliographic
selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Aganj I, Fischl B. Multi-Atlas Image Soft Segmentation via Computation of the Expected Label Value. IEEE Trans Med Imaging. 2021 Mar 09; PP. PMID: 33687840.
    Citations:    Fields:    
  2. Nolan AL, Petersen C, Iacono D, Mac Donald CL, Mukherjee P, van der Kouwe A, Jain S, Stevens A, Diamond BR, Wang R, Markowitz AJ, Fischl B, Perl DP, Manley GT, Keene CD, Diaz-Arrastia R, Edlow BL. Tractography-Pathology Correlations in Traumatic Brain Injury: A TRACK-TBI Study. J Neurotrauma. 2021 Feb 18. PMID: 33412995.
    Citations:    Fields:    
  3. Lu H, Kashani AH, Arfanakis K, Caprihan A, DeCarli C, Gold BT, Li Y, Maillard P, Satizabal CL, Stables L, Wang DJJ, Corriveau RA, Singh H, Smith EE, Fischl B, van der Kouwe A, Schwab K, Helmer KG, Greenberg SM. MarkVCID cerebral small vessel consortium: II. Neuroimaging protocols. Alzheimers Dement. 2021 Apr; 17(4):716-725. PMID: 33480157.
    Citations:    Fields:    
  4. Sun H, Jain A, Leone MJ, Alabsi HS, Brenner LN, Ye E, Ge W, Shao YP, Boutros CL, Wang R, Tesh RA, Magdamo C, Collens SI, Ganglberger W, Bassett IV, Meigs JB, Kalpathy-Cramer J, Li MD, Chu JT, Dougan ML, Stratton LW, Rosand J, Fischl B, Das S, Mukerji SS, Robbins GK, Westover MB. CoVA: An Acuity Score for Outpatient Screening that Predicts Coronavirus Disease 2019 Prognosis. J Infect Dis. 2021 01 04; 223(1):38-46. PMID: 33098643.
    Citations: 3     Fields:    Translation:Humans
  5. Yang J, Chen IA, Chang S, Tang J, Lee B, Kiliç K, Sunil S, Wang H, Varadarajan D, Magnain C, Chen SC, Costantini I, Pavone F, Fischl B, Boas DA. Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters. Neurophotonics. 2020 Oct; 7(4):045005. PMID: 33094126.
    Citations:    
  6. Cheng J, Dalca AV, Fischl B, Zöllei L. Cortical surface registration using unsupervised learning. Neuroimage. 2020 11 01; 221:117161. PMID: 32702486.
    Citations:    Fields:    Translation:Humans
  7. Diamond BR, Donald CLM, Frau-Pascual A, Snider SB, Fischl B, Dams-O'Connor K, Edlow BL. Optimizing the accuracy of cortical volumetric analysis in traumatic brain injury. MethodsX. 2020; 7:100994. PMID: 32760659.
    Citations:    
  8. Sun H, Jain A, Leone MJ, Alabsi HS, Brenner LN, Ye E, Ge W, Shao YP, Boutros CL, Wang R, Tesh RA, Magdamo C, Collens SI, Ganglberger W, Bassett IV, Meigs JB, Kalpathy-Cramer J, Li MD, Chu JT, Dougan M, Stratton L, Rosand J, Fischl B, Das S, Mukerji SS, Robbins GK, Westover MB. COVID-19 Outpatient Screening: a Prediction Score for Adverse Events. medRxiv. 2020 Jun 22. PMID: 32607523.
    Citations: 1     
  9. Henschel L, Conjeti S, Estrada S, Diers K, Fischl B, Reuter M. FastSurfer - A fast and accurate deep learning based neuroimaging pipeline. Neuroimage. 2020 10 01; 219:117012. PMID: 32526386.
    Citations: 2     Fields:    Translation:Humans
  10. Aganj I, Frau-Pascual A, Iglesias JE, Yendiki A, Augustinack JC, Salat DH, Fischl B. COMPENSATORY BRAIN CONNECTION DISCOVERY IN ALZHEIMER'S DISEASE. Proc IEEE Int Symp Biomed Imaging. 2020 Apr; 2020:283-287. PMID: 32587665.
    Citations:    
  11. Zöllei L, Iglesias JE, Ou Y, Grant PE, Fischl B. Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years. Neuroimage. 2020 09; 218:116946. PMID: 32442637.
    Citations: 4     Fields:    Translation:HumansCells
  12. Jones R, Grisot G, Augustinack J, Magnain C, Boas DA, Fischl B, Wang H, Yendiki A. Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain. Neuroimage. 2020 07 01; 214:116704. PMID: 32151760.
    Citations: 1     Fields:    Translation:Humans
  13. Iacono D, Lee P, Edlow BL, Gray N, Fischl B, Kenney K, Lew HL, Lozanoff S, Liacouras P, Lichtenberger J, Dams-O'Connor K, Cifu D, Hinds SR, Perl DP. Early-Onset Dementia in War Veterans: Brain Polypathology and Clinicopathologic Complexity. J Neuropathol Exp Neurol. 2020 02 01; 79(2):144-162. PMID: 31851313.
    Citations: 4     Fields:    Translation:Humans
  14. Brown EM, Pierce ME, Clark DC, Fischl BR, Iglesias JE, Milberg WP, McGlinchey RE, Salat DH. Test-retest reliability of FreeSurfer automated hippocampal subfield segmentation within and across scanners. Neuroimage. 2020 04 15; 210:116563. PMID: 31972281.
    Citations: 9     Fields:    Translation:Humans
  15. Ciesielski KTR, Stern ME, Diamond A, Khan S, Busa EA, Goldsmith TE, van der Kouwe A, Fischl B, Rosen BR. Maturational Changes in Human Dorsal and Ventral Visual Networks. Cereb Cortex. 2019 12 17; 29(12):5131-5149. PMID: 30927361.
    Citations: 2     Fields:    Translation:Humans
  16. Alho EJL, Alho ATDL, Horn A, Martin MDGM, Edlow BL, Fischl B, Nagy J, Fonoff ET, Hamani C, Heinsen H. The Ansa Subthalamica: A Neglected Fiber Tract. Mov Disord. 2020 01; 35(1):75-80. PMID: 31758733.
    Citations: 4     Fields:    Translation:HumansAnimals
  17. Kliemann D, Adolphs R, Tyszka JM, Fischl B, Yeo BTT, Nair R, Dubois J, Paul LK. Intrinsic Functional Connectivity of the Brain in Adults with a Single Cerebral Hemisphere. Cell Rep. 2019 11 19; 29(8):2398-2407.e4. PMID: 31747608.
    Citations: 7     Fields:    Translation:Humans
  18. Edlow BL, Mareyam A, Horn A, Polimeni JR, Witzel T, Tisdall MD, Augustinack JC, Stockmann JP, Diamond BR, Stevens A, Tirrell LS, Folkerth RD, Wald LL, Fischl B, van der Kouwe A. 7 Tesla MRI of the ex vivo human brain at 100 micron resolution. Sci Data. 2019 10 30; 6(1):244. PMID: 31666530.
    Citations: 12     Fields:    Translation:Humans
  19. Dalca AV, Yu E, Golland P, Fischl B, Sabuncu MR, Iglesias JE. Unsupervised Deep Learning for Bayesian Brain MRI Segmentation. Med Image Comput Comput Assist Interv. 2019 Oct; 11766:356-365. PMID: 32432231.
    Citations: 1     Fields:    
  20. Aganj I, Fischl B. Expected Label Value Computation for Atlas-Based Image Segmentation. Proc IEEE Int Symp Biomed Imaging. 2019 Apr; 2019:334-338. PMID: 31341547.
    Citations:    
  21. Jog A, Hoopes A, Greve DN, Van Leemput K, Fischl B. PSACNN: Pulse sequence adaptive fast whole brain segmentation. Neuroimage. 2019 10 01; 199:553-569. PMID: 31129303.
    Citations: 2     Fields:    Translation:Humans
  22. Cohen MA, Dilks DD, Koldewyn K, Weigelt S, Feather J, Kell AJ, Keil B, Fischl B, Zöllei L, Wald L, Saxe R, Kanwisher N. Representational similarity precedes category selectivity in the developing ventral visual pathway. Neuroimage. 2019 08 15; 197:565-574. PMID: 31077844.
    Citations: 4     Fields:    Translation:Humans
  23. Frost R, Wighton P, Karahanoglu FI, Robertson RL, Grant PE, Fischl B, Tisdall MD, van der Kouwe A. Markerless high-frequency prospective motion correction for neuroanatomical MRI. Magn Reson Med. 2019 07; 82(1):126-144. PMID: 30821010.
    Citations: 9     Fields:    Translation:Humans
  24. Stewart W, Allinson K, Al-Sarraj S, Bachmeier C, Barlow K, Belli A, Burns MP, Carson A, Crawford F, Dams-O'Connor K, Diaz-Arrastia R, Dixon CE, Edlow BL, Ferguson S, Fischl B, Folkerth RD, Gentleman S, Giza CC, Grady MS, Helmy A, Herceg M, Holton JL, Howell D, Hutchinson PJ, Iacono D, Iglesias JE, Ikonomovic MD, Johnson VE, Keene CD, Kofler JK, Koliatsos VE, Lee EB, Levin H, Lifshitz J, Ling H, Loane DJ, Love S, Maas AI, Marklund N, Master CL, McElvenny DM, Meaney DF, Menon DK, Montine TJ, Mouzon B, Mufson EJ, Ojo JO, Prins M, Revesz T, Ritchie CW, Smith C, Sylvester R, Tang CY, Trojanowski JQ, Urankar K, Vink R, Wellington C, Wilde EA, Wilson L, Yeates K, Smith DH. Primum non nocere: a call for balance when reporting on CTE. Lancet Neurol. 2019 03; 18(3):231-233. PMID: 30784550.
    Citations: 9     Fields:    Translation:Humans
  25. Blazejewska AI, Fischl B, Wald LL, Polimeni JR. Intracortical smoothing of small-voxel fMRI data can provide increased detection power without spatial resolution losses compared to conventional large-voxel fMRI data. Neuroimage. 2019 04 01; 189:601-614. PMID: 30690157.
    Citations: 3     Fields:    Translation:Humans
  26. Frau-Pascual A, Fogarty M, Fischl B, Yendiki A, Aganj I. Quantification of structural brain connectivity via a conductance model. Neuroimage. 2019 04 01; 189:485-496. PMID: 30677502.
    Citations: 1     Fields:    Translation:Humans
  27. Magnain C, Augustinack JC, Tirrell L, Fogarty M, Frosch MP, Boas D, Fischl B, Rockland KS. Colocalization of neurons in optical coherence microscopy and Nissl-stained histology in Brodmann's area 32 and area 21. Brain Struct Funct. 2019 Jan; 224(1):351-362. PMID: 30328512.
    Citations: 1     Fields:    Translation:HumansCells
  28. Bookheimer SY, Salat DH, Terpstra M, Ances BM, Barch DM, Buckner RL, Burgess GC, Curtiss SW, Diaz-Santos M, Elam JS, Fischl B, Greve DN, Hagy HA, Harms MP, Hatch OM, Hedden T, Hodge C, Japardi KC, Kuhn TP, Ly TK, Smith SM, Somerville LH, Ugurbil K, van der Kouwe A, Van Essen D, Woods RP, Yacoub E. The Lifespan Human Connectome Project in Aging: An overview. Neuroimage. 2019 01 15; 185:335-348. PMID: 30332613.
    Citations: 24     Fields:    Translation:Humans
  29. Harms MP, Somerville LH, Ances BM, Andersson J, Barch DM, Bastiani M, Bookheimer SY, Brown TB, Buckner RL, Burgess GC, Coalson TS, Chappell MA, Dapretto M, Douaud G, Fischl B, Glasser MF, Greve DN, Hodge C, Jamison KW, Jbabdi S, Kandala S, Li X, Mair RW, Mangia S, Marcus D, Mascali D, Moeller S, Nichols TE, Robinson EC, Salat DH, Smith SM, Sotiropoulos SN, Terpstra M, Thomas KM, Tisdall MD, Ugurbil K, van der Kouwe A, Woods RP, Zöllei L, Van Essen DC, Yacoub E. Extending the Human Connectome Project across ages: Imaging protocols for the Lifespan Development and Aging projects. Neuroimage. 2018 12; 183:972-984. PMID: 30261308.
    Citations: 23     Fields:    Translation:Humans
  30. Iglesias JE, Modat M, Peter L, Stevens A, Annunziata R, Vercauteren T, Lein E, Fischl B, Ourselin S. Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. Med Image Anal. 2018 12; 50:127-144. PMID: 30282061.
    Citations: 2     Fields:    Translation:Humans
  31. Li Y, Barkovich MJ, Karch CM, Nillo RM, Fan CC, Broce IJ, Tan CH, Cuneo D, Hess CP, Dillon WP, Glenn OA, Glastonbury CM, Oln