Harvard Catalyst Profiles

Contact, publication, and social network information about Harvard faculty and fellows.

Bruce R. Fischl, Ph.D.

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Other Positions
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Research
research activities and funding
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
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  1. RF1MH123195 (IGLESIAS GONZALEZ, JUAN EUGENIO) Aug 1, 2020 - Jul 31, 2023
    NIH/NIMH
    Open-source software for multi-scale mapping of the human brain
    Role: Co-Principal Investigator
  2. R01AG064027 (FISCHL, BRUCE) Apr 15, 2020 - Mar 31, 2025
    NIH/NIA
    Deep Learning Algorithms for FreeSurfer
    Role: Principal Investigator
  3. R56AG064027 (FISCHL, BRUCE) Aug 1, 2019 - Jul 31, 2020
    NIH/NIA
    Deep Learning Algorithms for FreeSurfer
    Role: Principal Investigator
  4. R42AG062026 (WIGHTON, PAUL) Jul 1, 2019 - Jun 30, 2020
    NIH/NIA
    Unbiased longitudinal neuromorphometry for clinical decision support
    Role: Co-Principal Investigator
  5. R01NS105820 (FISCHL, BRUCE) Dec 1, 2018 - Nov 30, 2023
    NIH/NINDS
    Segmenting Brain Structures for Neurological Disorders
    Role: Principal Investigator

Bibliographic
selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Sun H, Jain A, Leone MJ, Alabsi HS, Brenner LN, Ye E, Ge W, Shao YP, Boutros CL, Wang R, Tesh RA, Magdamo C, Collens SI, Ganglberger W, Bassett IV, Meigs JB, Kalpathy-Cramer J, Li MD, Chu JT, Dougan ML, Stratton LW, Rosand J, Fischl B, Das S, Mukerji SS, Robbins GK, Westover MB. CoVA: An Acuity Score for Outpatient Screening that Predicts COVID-19 Prognosis. J Infect Dis. 2020 Oct 24. PMID: 33098643.
    Citations:    
  2. Yang J, Chen IA, Chang S, Tang J, Lee B, Kiliç K, Sunil S, Wang H, Varadarajan D, Magnain C, Chen SC, Costantini I, Pavone F, Fischl B, Boas DA. Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters. Neurophotonics. 2020 Oct; 7(4):045005. PMID: 33094126.
    Citations:    
  3. Cheng J, Dalca AV, Fischl B, Zöllei L. Cortical surface registration using unsupervised learning. Neuroimage. 2020 Jul 20; 221:117161. PMID: 32702486.
    Citations:    Fields:    
  4. Diamond BR, Donald CLM, Frau-Pascual A, Snider SB, Fischl B, Dams-O'Connor K, Edlow BL. Optimizing the accuracy of cortical volumetric analysis in traumatic brain injury. MethodsX. 2020; 7:100994. PMID: 32760659.
    Citations:    
  5. Sun H, Jain A, Leone MJ, Alabsi HS, Brenner LN, Ye E, Ge W, Shao YP, Boutros CL, Wang R, Tesh RA, Magdamo C, Collens SI, Ganglberger W, Bassett IV, Meigs JB, Kalpathy-Cramer J, Li MD, Chu JT, Dougan M, Stratton L, Rosand J, Fischl B, Das S, Mukerji SS, Robbins GK, Westover MB. COVID-19 Outpatient Screening: a Prediction Score for Adverse Events. medRxiv. 2020 Jun 22. PMID: 32607523.
    Citations:    
  6. Henschel L, Conjeti S, Estrada S, Diers K, Fischl B, Reuter M. FastSurfer - A fast and accurate deep learning based neuroimaging pipeline. Neuroimage. 2020 10 01; 219:117012. PMID: 32526386.
    Citations:    Fields:    
  7. Aganj I, Frau-Pascual A, Iglesias JE, Yendiki A, Augustinack JC, Salat DH, Fischl B. COMPENSATORY BRAIN CONNECTION DISCOVERY IN ALZHEIMER'S DISEASE. Proc IEEE Int Symp Biomed Imaging. 2020 Apr; 2020:283-287. PMID: 32587665.
    Citations:    
  8. Zöllei L, Iglesias JE, Ou Y, Grant PE, Fischl B. Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years. Neuroimage. 2020 09; 218:116946. PMID: 32442637.
    Citations:    Fields:    
  9. Jones R, Grisot G, Augustinack J, Magnain C, Boas DA, Fischl B, Wang H, Yendiki A. Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain. Neuroimage. 2020 07 01; 214:116704. PMID: 32151760.
    Citations:    Fields:    
  10. Iacono D, Lee P, Edlow BL, Gray N, Fischl B, Kenney K, Lew HL, Lozanoff S, Liacouras P, Lichtenberger J, Dams-O'Connor K, Cifu D, Hinds SR, Perl DP. Early-Onset Dementia in War Veterans: Brain Polypathology and Clinicopathologic Complexity. J Neuropathol Exp Neurol. 2020 02 01; 79(2):144-162. PMID: 31851313.
    Citations:    Fields:    Translation:Humans
  11. Brown EM, Pierce ME, Clark DC, Fischl BR, Iglesias JE, Milberg WP, McGlinchey RE, Salat DH. Test-retest reliability of FreeSurfer automated hippocampal subfield segmentation within and across scanners. Neuroimage. 2020 04 15; 210:116563. PMID: 31972281.
    Citations: 1     Fields:    
  12. Ciesielski KTR, Stern ME, Diamond A, Khan S, Busa EA, Goldsmith TE, van der Kouwe A, Fischl B, Rosen BR. Maturational Changes in Human Dorsal and Ventral Visual Networks. Cereb Cortex. 2019 12 17; 29(12):5131-5149. PMID: 30927361.
    Citations: 1     Fields:    
  13. Alho EJL, Alho ATDL, Horn A, Martin MDGM, Edlow BL, Fischl B, Nagy J, Fonoff ET, Hamani C, Heinsen H. The Ansa Subthalamica: A Neglected Fiber Tract. Mov Disord. 2020 01; 35(1):75-80. PMID: 31758733.
    Citations: 3     Fields:    
  14. Kliemann D, Adolphs R, Tyszka JM, Fischl B, Yeo BTT, Nair R, Dubois J, Paul LK. Intrinsic Functional Connectivity of the Brain in Adults with a Single Cerebral Hemisphere. Cell Rep. 2019 11 19; 29(8):2398-2407.e4. PMID: 31747608.
    Citations: 3     Fields:    Translation:Humans
  15. Edlow BL, Mareyam A, Horn A, Polimeni JR, Witzel T, Tisdall MD, Augustinack JC, Stockmann JP, Diamond BR, Stevens A, Tirrell LS, Folkerth RD, Wald LL, Fischl B, van der Kouwe A. 7 Tesla MRI of the ex vivo human brain at 100 micron resolution. Sci Data. 2019 10 30; 6(1):244. PMID: 31666530.
    Citations: 4     Fields:    Translation:Humans
  16. Dalca AV, Yu E, Golland P, Fischl B, Sabuncu MR, Iglesias JE. Unsupervised Deep Learning for Bayesian Brain MRI Segmentation. Med Image Comput Comput Assist Interv. 2019 Oct; 11766:356-365. PMID: 32432231.
    Citations: 1     Fields:    
  17. Aganj I, Fischl B. Expected Label Value Computation for Atlas-Based Image Segmentation. Proc IEEE Int Symp Biomed Imaging. 2019 Apr; 2019:334-338. PMID: 31341547.
    Citations:    
  18. Jog A, Hoopes A, Greve DN, Van Leemput K, Fischl B. PSACNN: Pulse sequence adaptive fast whole brain segmentation. Neuroimage. 2019 10 01; 199:553-569. PMID: 31129303.
    Citations: 1     Fields:    Translation:Humans
  19. Cohen MA, Dilks DD, Koldewyn K, Weigelt S, Feather J, Kell AJ, Keil B, Fischl B, Zöllei L, Wald L, Saxe R, Kanwisher N. Representational similarity precedes category selectivity in the developing ventral visual pathway. Neuroimage. 2019 08 15; 197:565-574. PMID: 31077844.
    Citations: 2     Fields:    Translation:Humans
  20. Frost R, Wighton P, Karahanoglu FI, Robertson RL, Grant PE, Fischl B, Tisdall MD, van der Kouwe A. Markerless high-frequency prospective motion correction for neuroanatomical MRI. Magn Reson Med. 2019 07; 82(1):126-144. PMID: 30821010.
    Citations: 4     Fields:    Translation:Humans
  21. Stewart W, Allinson K, Al-Sarraj S, Bachmeier C, Barlow K, Belli A, Burns MP, Carson A, Crawford F, Dams-O'Connor K, Diaz-Arrastia R, Dixon CE, Edlow BL, Ferguson S, Fischl B, Folkerth RD, Gentleman S, Giza CC, Grady MS, Helmy A, Herceg M, Holton JL, Howell D, Hutchinson PJ, Iacono D, Iglesias JE, Ikonomovic MD, Johnson VE, Keene CD, Kofler JK, Koliatsos VE, Lee EB, Levin H, Lifshitz J, Ling H, Loane DJ, Love S, Maas AI, Marklund N, Master CL, McElvenny DM, Meaney DF, Menon DK, Montine TJ, Mouzon B, Mufson EJ, Ojo JO, Prins M, Revesz T, Ritchie CW, Smith C, Sylvester R, Tang CY, Trojanowski JQ, Urankar K, Vink R, Wellington C, Wilde EA, Wilson L, Yeates K, Smith DH. Primum non nocere: a call for balance when reporting on CTE. Lancet Neurol. 2019 03; 18(3):231-233. PMID: 30784550.
    Citations: 6     Fields:    Translation:Humans
  22. Blazejewska AI, Fischl B, Wald LL, Polimeni JR. Intracortical smoothing of small-voxel fMRI data can provide increased detection power without spatial resolution losses compared to conventional large-voxel fMRI data. Neuroimage. 2019 04 01; 189:601-614. PMID: 30690157.
    Citations:    Fields:    Translation:Humans
  23. Frau-Pascual A, Fogarty M, Fischl B, Yendiki A, Aganj I. Quantification of structural brain connectivity via a conductance model. Neuroimage. 2019 04 01; 189:485-496. PMID: 30677502.
    Citations: 1     Fields:    Translation:Humans
  24. Magnain C, Augustinack JC, Tirrell L, Fogarty M, Frosch MP, Boas D, Fischl B, Rockland KS. Colocalization of neurons in optical coherence microscopy and Nissl-stained histology in Brodmann's area 32 and area 21. Brain Struct Funct. 2019 Jan; 224(1):351-362. PMID: 30328512.
    Citations: 1     Fields:    Translation:HumansCells
  25. Bookheimer SY, Salat DH, Terpstra M, Ances BM, Barch DM, Buckner RL, Burgess GC, Curtiss SW, Diaz-Santos M, Elam JS, Fischl B, Greve DN, Hagy HA, Harms MP, Hatch OM, Hedden T, Hodge C, Japardi KC, Kuhn TP, Ly TK, Smith SM, Somerville LH, Ugurbil K, van der Kouwe A, Van Essen D, Woods RP, Yacoub E. The Lifespan Human Connectome Project in Aging: An overview. Neuroimage. 2019 01 15; 185:335-348. PMID: 30332613.
    Citations: 12     Fields:    Translation:Humans
  26. Harms MP, Somerville LH, Ances BM, Andersson J, Barch DM, Bastiani M, Bookheimer SY, Brown TB, Buckner RL, Burgess GC, Coalson TS, Chappell MA, Dapretto M, Douaud G, Fischl B, Glasser MF, Greve DN, Hodge C, Jamison KW, Jbabdi S, Kandala S, Li X, Mair RW, Mangia S, Marcus D, Mascali D, Moeller S, Nichols TE, Robinson EC, Salat DH, Smith SM, Sotiropoulos SN, Terpstra M, Thomas KM, Tisdall MD, Ugurbil K, van der Kouwe A, Woods RP, Zöllei L, Van Essen DC, Yacoub E. Extending the Human Connectome Project across ages: Imaging protocols for the Lifespan Development and Aging projects. Neuroimage. 2018 12; 183:972-984. PMID: 30261308.
    Citations: 12     Fields:    Translation:Humans
  27. Iglesias JE, Modat M, Peter L, Stevens A, Annunziata R, Vercauteren T, Lein E, Fischl B, Ourselin S. Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. Med Image Anal. 2018 12; 50:127-144. PMID: 30282061.
    Citations:    Fields:    Translation:Humans
  28. Li Y, Barkovich MJ, Karch CM, Nillo RM, Fan CC, Broce IJ, Tan CH, Cuneo D, Hess CP, Dillon WP, Glenn OA, Glastonbury CM, Olney N, Yokoyama JS, Bonham LW, Miller B, Kao A, Schmansky N, Fischl B, Andreassen OA, Jernigan T, Dale A, Barkovich AJ, Desikan RS, Sugrue LP. Regionally specific TSC1 and TSC2 gene expression in tuberous sclerosis complex. Sci Rep. 2018 09 06; 8(1):13373. PMID: 30190613.
    Citations: 1     Fields:    Translation:Humans
  29. Aganj I, Harisinghani MG, Weissleder R, Fischl B. Unsupervised Medical Image Segmentation Based on the Local Center of Mass. Sci Rep. 2018 08 29; 8(1):13012. PMID: 30158534.
    Citations: 6     Fields:    Translation:Humans
  30. Iglesias JE, Insausti R, Lerma-Usabiaga G, Bocchetta M, Van Leemput K, Greve DN, van der Kouwe A, Fischl B, Caballero-Gaudes C, Paz-Alonso PM. A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. Neuroimage. 2018 12; 183:314-326. PMID: 30121337.
    Citations: 17     Fields:    Translation:Humans
  31. Wu J, Ngo GH, Greve D, Li J, He T, Fischl B, Eickhoff SB, Yeo BTT. Accurate nonlinear mapping between MNI volumetric and FreeSurfer surface coordinate systems. Hum Brain Mapp. 2018 09; 39(9):3793-3808. PMID: 29770530.
    Citations: 2     Fields:    Translation:Humans
  32. Edlow BL, Keene CD, Perl DP, Iacono D, Folkerth RD, Stewart W, Mac Donald CL, Augustinack J, Diaz-Arrastia R, Estrada C, Flannery E, Gordon WA, Grabowski TJ, Hansen K, Hoffman J, Kroenke C, Larson EB, Lee P, Mareyam A, McNab JA, McPhee J, Moreau AL, Renz A, Richmire K, Stevens A, Tang CY, Tirrell LS, Trittschuh EH, van der Kouwe A, Varjabedian A, Wald LL, Wu O, Yendiki A, Young L, Zöllei L, Fischl B, Crane PK, Dams-O'Connor K. Multimodal Characterization of the Late Effects of Traumatic Brain Injury: A Methodological Overview of the Late Effects of Traumatic Brain Injury Project. J Neurotrauma. 2018 07 15; 35(14):1604-1619. PMID: 29421973.
    Citations: 3     Fields:    Translation:Humans
  33. Lindemer ER, Greve DN, Fischl B, Salat DH, Gomez-Isla T. White matter abnormalities and cognition in patients with conflicting diagnoses and CSF profiles. Neurology. 2018 04 24; 90(17):e1461-e1469. PMID: 29572277.
    Citations: 1     Fields:    Translation:Humans
  34. Fischl B, Sereno MI. Microstructural parcellation of the human brain. Neuroimage. 2018 11 15; 182:219-231. PMID: 29496612.
    Citations: 1     Fields:    Translation:Humans
  35. Kenney K, Iacono D, Edlow BL, Katz DI, Diaz-Arrastia R, Dams-O'Connor K, Daneshvar DH, Stevens A, Moreau AL, Tirrell LS, Varjabedian A, Yendiki A, van der Kouwe A, Mareyam A, McNab JA, Gordon WA, Fischl B, McKee AC, Perl DP. Dementia After Moderate-Severe Traumatic Brain Injury: Coexistence of Multiple Proteinopathies. J Neuropathol Exp Neurol. 2018 Jan 01; 77(1):50-63. PMID: 29155947.
    Citations: 14     Fields:    Translation:HumansCells
  36. Greve DN, Fischl B. False positive rates in surface-based anatomical analysis. Neuroimage. 2018 05 01; 171:6-14. PMID: 29288131.
    Citations: 16     Fields:    Translation:Humans
  37. Belathur Suresh M, Fischl B, Salat DH. Factors influencing accuracy of cortical thickness in the diagnosis of Alzheimer's disease. Hum Brain Mapp. 2018 04; 39(4):1500-1515. PMID: 29271096.
    Citations: 3     Fields:    Translation:Humans
  38. Wang H, Magnain C, Sakadžic S, Fischl B, Boas DA. Characterizing the optical properties of human brain tissue with high numerical aperture optical coherence tomography. Biomed Opt Express. 2017 Dec 01; 8(12):5617-5636. PMID: 29296492.
    Citations: 10     
  39. Siless V, Chang K, Fischl B, Yendiki A. AnatomiCuts: Hierarchical clustering of tractography streamlines based on anatomical similarity. Neuroimage. 2018 02 01; 166:32-45. PMID: 29100937.
    Citations: 2     Fields:    Translation:Humans
  40. Wang H, Magnain C, Wang R, Dubb J, Varjabedian A, Tirrell LS, Stevens A, Augustinack JC, Konukoglu E, Aganj I, Frosch MP, Schmahmann JD, Fischl B, Boas DA. as-PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity. Neuroimage. 2018 01 15; 165:56-68. PMID: 29017866.
    Citations: 5     Fields:    Translation:Humans
  41. Zaretskaya N, Fischl B, Reuter M, Renvall V, Polimeni JR. Advantages of cortical surface reconstruction using submillimeter 7 T MEMPRAGE. Neuroimage. 2018 01 15; 165:11-26. PMID: 28970143.
    Citations: 7     Fields:    Translation:Humans
  42. Aganj I, Fischl B. Multimodal Image Registration through Simultaneous Segmentation. IEEE Signal Process Lett. 2017 Nov; 24(11):1661-1665. PMID: 29151777.
    Citations:    
  43. Tong T, Aganj I, Ge T, Polimeni JR, Fischl B. Functional density and edge maps: Characterizing functional architecture in individuals and improving cross-subject registration. Neuroimage. 2017 09; 158:346-355. PMID: 28716714.
    Citations: 9     Fields:    Translation:Humans
  44. Saygin ZM, Kliemann D, Iglesias JE, van der Kouwe AJW, Boyd E, Reuter M, Stevens A, Van Leemput K, McKee A, Frosch MP, Fischl B, Augustinack JC. High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas. Neuroimage. 2017 07 15; 155:370-382. PMID: 28479476.
    Citations: 33     Fields:    Translation:Humans
  45. Bianciardi M, Strong C, Toschi N, Edlow BL, Fischl B, Brown EN, Rosen BR, Wald LL. A probabilistic template of human mesopontine tegmental nuclei from in vivo 7T MRI. Neuroimage. 2018 04 15; 170:222-230. PMID: 28476663.
    Citations: 7     Fields:    Translation:Humans
  46. Polimeni JR, Renvall V, Zaretskaya N, Fischl B. Analysis strategies for high-resolution UHF-fMRI data. Neuroimage. 2018 03; 168:296-320. PMID: 28461062.
    Citations: 8     Fields:    Translation:Humans
  47. Koley S, Chakraborty C, Mainero C, Fischl B, Aganj I. A Fast Approach to Automatic Detection of Brain Lesions. Brainlesion. 2016; 10154:52-61. PMID: 29082383.
    Citations:    
  48. Thaker AA, Weinberg BD, Dillon WP, Hess CP, Cabral HJ, Fleischman DA, Leurgans SE, Bennett DA, Hyman BT, Albert MS, Killiany RJ, Fischl B, Dale AM, Desikan RS. Entorhinal Cortex: Antemortem Cortical Thickness and Postmortem Neurofibrillary Tangles and Amyloid Pathology. AJNR Am J Neuroradiol. 2017 May; 38(5):961-965. PMID: 28279988.
    Citations: 7     Fields:    Translation:HumansCells
  49. Yokoyama JS, Karch CM, Fan CC, Bonham LW, Kouri N, Ross OA, Rademakers R, Kim J, Wang Y, Höglinger GU, Müller U, Ferrari R, Hardy J, Momeni P, Sugrue LP, Hess CP, James Barkovich A, Boxer AL, Seeley WW, Rabinovici GD, Rosen HJ, Miller BL, Schmansky NJ, Fischl B, Hyman BT, Dickson DW, Schellenberg GD, Andreassen OA, Dale AM, Desikan RS. Shared genetic risk between corticobasal degeneration, progressive supranuclear palsy, and frontotemporal dementia. Acta Neuropathol. 2017 05; 133(5):825-837. PMID: 28271184.
    Citations: 14     Fields:    Translation:HumansCells
  50. Aganj I, Iglesias JE, Reuter M, Sabuncu MR, Fischl B. Mid-space-independent deformable image registration. Neuroimage. 2017 05 15; 152:158-170. PMID: 28242316.
    Citations: 2     Fields:    Translation:Humans
  51. Lerch JP, van der Kouwe AJ, Raznahan A, Paus T, Johansen-Berg H, Miller KL, Smith SM, Fischl B, Sotiropoulos SN. Studying neuroanatomy using MRI. Nat Neurosci. 2017 Feb 23; 20(3):314-326. PMID: 28230838.
    Citations: 31     Fields:    Translation:Humans
  52. Ding SL, Royall JJ, Sunkin SM, Ng L, Facer BA, Lesnar P, Guillozet-Bongaarts A, McMurray B, Szafer A, Dolbeare TA, Stevens A, Tirrell L, Benner T, Caldejon S, Dalley RA, Dee N, Lau C, Nyhus J, Reding M, Riley ZL, Sandman D, Shen E, van der Kouwe A, Varjabedian A, Write M, Zollei L, Dang C, Knowles JA, Koch C, Phillips JW, Sestan N, Wohnoutka P, Zielke HR, Hohmann JG, Jones AR, Bernard A, Hawrylycz MJ, Hof PR, Fischl B, LeinReference ES. Comprehensive cellular-resolution atlas of the adult human brain. J Comp Neurol. 2017 02 01; 525(2):407. PMID: 27917481.
    Citations: 5     Fields:    
  53. Lindemer ER, Greve DN, Fischl BR, Augustinack JC, Salat DH. Regional staging of white matter signal abnormalities in aging and Alzheimer's disease. Neuroimage Clin. 2017; 14:156-165. PMID: 28180074.
    Citations: 12     Fields:    Translation:Humans
  54. Lindemer ER, Greve DN, Fischl B, Augustinack JC, Salat DH. Differential Regional Distribution of Juxtacortical White Matter Signal Abnormalities in Aging and Alzheimer's Disease. J Alzheimers Dis. 2017; 57(1):293-303. PMID: 28222518.
    Citations: 7     Fields:    Translation:Humans
  55. Weiner KS, Barnett MA, Lorenz S, Caspers J, Stigliani A, Amunts K, Zilles K, Fischl B, Grill-Spector K. The Cytoarchitecture of Domain-specific Regions in Human High-level Visual Cortex. Cereb Cortex. 2017 01 01; 27(1):146-161. PMID: 27909003.
    Citations: 11     Fields:    Translation:Humans
  56. Ding SL, Royall JJ, Sunkin SM, Ng L, Facer BA, Lesnar P, Guillozet-Bongaarts A, McMurray B, Szafer A, Dolbeare TA, Stevens A, Tirrell L, Benner T, Caldejon S, Dalley RA, Dee N, Lau C, Nyhus J, Reding M, Riley ZL, Sandman D, Shen E, van der Kouwe A, Varjabedian A, Wright M, Zöllei L, Dang C, Knowles JA, Koch C, Phillips JW, Sestan N, Wohnoutka P, Zielke HR, Hohmann JG, Jones AR, Bernard A, Hawrylycz MJ, Hof PR, Fischl B, Lein ES. Comprehensive cellular-resolution atlas of the adult human brain. J Comp Neurol. 2016 11 01; 524(16):3127-481. PMID: 27418273.
    Citations: 37     Fields:    Translation:Humans
  57. Sabuncu MR, Ge T, Holmes AJ, Smoller JW, Buckner RL, Fischl B. Morphometricity as a measure of the neuroanatomical signature of a trait. Proc Natl Acad Sci U S A. 2016 09 27; 113(39):E5749-56. PMID: 27613854.
    Citations: 9     Fields:    Translation:Humans
  58. Iglesias JE, Van Leemput K, Augustinack J, Insausti R, Fischl B, Reuter M. Bayesian longitudinal segmentation of hippocampal substructures in brain MRI using subject-specific atlases. Neuroimage. 2016 Nov 01; 141:542-555. PMID: 27426838.
    Citations: 19     Fields:    Translation:Humans
  59. Magnain C, Wang H, Sakadžic S, Fischl B, Boas DA. En face speckle reduction in optical coherence microscopy by frequency compounding. Opt Lett. 2016 May 01; 41(9):1925-8. PMID: 27128040.
    Citations: 3     Fields:    
  60. Konukoglu E, Coutu JP, Salat DH, Fischl B. Multivariate statistical analysis of diffusion imaging parameters using partial least squares: Application to white matter variations in Alzheimer's disease. Neuroimage. 2016 07 01; 134:573-586. PMID: 27103138.
    Citations: 4     Fields:    Translation:Humans
  61. Ho NF, Iglesias JE, Sum MY, Kuswanto CN, Sitoh YY, De Souza J, Hong Z, Fischl B, Roffman JL, Zhou J, Sim K, Holt DJ. Progression from selective to general involvement of hippocampal subfields in schizophrenia. Mol Psychiatry. 2017 01; 22(1):142-152. PMID: 26903271.
    Citations: 31     Fields:    Translation:Humans
  62. Larvie M, Fischl B. Volumetric and fiber-tracing MRI methods for gray and white matter. Handb Clin Neurol. 2016; 135:39-60. PMID: 27432659.
    Citations: 1     Fields:    Translation:HumansCells
  63. Yendiki A, Reuter M, Wilkens P, Rosas HD, Fischl B. Joint reconstruction of white-matter pathways from longitudinal diffusion MRI data with anatomical priors. Neuroimage. 2016 Feb 15; 127:277-286. PMID: 26717853.
    Citations: 11     Fields:    Translation:Humans
  64. Tisdall MD, Reuter M, Qureshi A, Buckner RL, Fischl B, van der Kouwe AJW. Prospective motion correction with volumetric navigators (vNavs) reduces the bias and variance in brain morphometry induced by subject motion. Neuroimage. 2016 Feb 15; 127:11-22. PMID: 26654788.
    Citations: 24     Fields:    Translation:Humans
  65. Aganj I, Iglesias JE, Reuter M, Sabuncu MR, Fischl B. Mid-Space-Independent Symmetric Data Term for Pairwise Deformable Image Registration. Med Image Comput Comput Assist Interv. 2015 Oct; 9350:263-271. PMID: 26835520.
    Citations:    Fields:    
  66. Cash DM, Frost C, Iheme LO, Ünay D, Kandemir M, Fripp J, Salvado O, Bourgeat P, Reuter M, Fischl B, Lorenzi M, Frisoni GB, Pennec X, Pierson RK, Gunter JL, Senjem ML, Jack CR, Guizard N, Fonov VS, Collins DL, Modat M, Cardoso MJ, Leung KK, Wang H, Das SR, Yushkevich PA, Malone IB, Fox NC, Schott JM, Ourselin S. Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge. Neuroimage. 2015 Dec; 123:149-64. PMID: 26275383.
    Citations: 18     Fields:    Translation:Humans
  67. Ganz M, Greve DN, Fischl B, Konukoglu E. Relevant feature set estimation with a knock-out strategy and random forests. Neuroimage. 2015 Nov 15; 122:131-48. PMID: 26272728.
    Citations: 3     Fields:    Translation:Humans
  68. Boes AD, Caruso P, Duhaime AC, Fischl B. FreeSurfer is useful for early detection of Rasmussen's encephalitis prior to obvious atrophy. Dev Med Child Neurol. 2016 Feb; 58(2):209-10. PMID: 26174006.
    Citations: 3     Fields:    Translation:Humans
  69. Holmes AJ, Hollinshead MO, O'Keefe TM, Petrov VI, Fariello GR, Wald LL, Fischl B, Rosen BR, Mair RW, Roffman JL, Smoller JW, Buckner RL. Brain Genomics Superstruct Project initial data release with structural, functional, and behavioral measures. Sci Data. 2015; 2:150031. PMID: 26175908.
    Citations: 88     Fields:    Translation:Humans
  70. Lindemer ER, Salat DH, Smith EE, Nguyen K, Fischl B, Greve DN. White matter signal abnormality quality differentiates mild cognitive impairment that converts to Alzheimer's disease from nonconverters. Neurobiol Aging. 2015 Sep; 36(9):2447-57. PMID: 26095760.
    Citations: 16     Fields:    Translation:Humans
  71. Iglesias JE, Augustinack JC, Nguyen K, Player CM, Player A, Wright M, Roy N, Frosch MP, McKee AC, Wald LL, Fischl B, Van Leemput K. A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI. Neuroimage. 2015 Jul 15; 115:117-37. PMID: 25936807.
    Citations: 162     Fields:    Translation:Humans
  72. Iglesias JE, Van Leemput K, Bhatt P, Casillas C, Dutt S, Schuff N, Truran-Sacrey D, Boxer A, Fischl B. Bayesian segmentation of brainstem structures in MRI. Neuroimage. 2015 Jun; 113:184-95. PMID: 25776214.
    Citations: 23     Fields:    Translation:Humans
  73. de Macedo Rodrigues K, Ben-Avi E, Sliva DD, Choe MS, Drottar M, Wang R, Fischl B, Grant PE, Zöllei L. A FreeSurfer-compliant consistent manual segmentation of infant brains spanning the 0-2 year age range. Front Hum Neurosci. 2015; 9:21. PMID: 25741260.
    Citations: 13     
  74. Magnain C, Augustinack JC, Konukoglu E, Frosch MP, Sakadžic S, Varjabedian A, Garcia N, Wedeen VJ, Boas DA, Fischl B. Optical coherence tomography visualizes neurons in human entorhinal cortex. Neurophotonics. 2015 Feb 09; 2(1):015004. PMID: 25741528.
    Citations: 17     
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