Harvard Catalyst Profiles

Contact, publication, and social network information about Harvard faculty and fellows.

Bruce R. Fischl, Ph.D.

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Other Positions
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Research
research activities and funding
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
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  1. RF1MH123195 (IGLESIAS GONZALEZ, JUAN EUGENIO) Aug 1, 2020 - Jul 31, 2023
    NIH
    Open-source software for multi-scale mapping of the human brain
    Role: Co-Principal Investigator
  2. R01AG064027 (FISCHL, BRUCE) Apr 15, 2020 - Mar 31, 2025
    NIH
    Deep Learning Algorithms for FreeSurfer
    Role: Principal Investigator
  3. R56AG064027 (FISCHL, BRUCE) Aug 1, 2019 - Apr 14, 2020
    NIH
    Deep Learning Algorithms for FreeSurfer
    Role: Principal Investigator
  4. R42AG062026 (SCHMANSKY, NICHOLAS JOHN) Jul 1, 2019 - May 31, 2022
    NIH
    Unbiased longitudinal neuromorphometry for clinical decision support
    Role: Co-Principal Investigator
  5. R01NS105820 (FISCHL, BRUCE) Dec 1, 2018 - Nov 30, 2023
    NIH
    Segmenting Brain Structures for Neurological Disorders
    Role: Principal Investigator

Bibliographic
selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Aganj I, Fischl B. Multi-Atlas Image Soft Segmentation via Computation of the Expected Label Value. IEEE Trans Med Imaging. 2021 06; 40(6):1702-1710. PMID: 33687840.
    Citations:    Fields:    
  2. Frau-Pascual A, Augustinack J, Varadarajan D, Yendiki A, Salat DH, Fischl B, Aganj I. Conductance-Based Structural Brain Connectivity in Aging and Dementia. Brain Connect. 2021 May 27. PMID: 34042511.
    Citations:    Fields:    
  3. Iglesias JE, Billot B, Balbastre Y, Tabari A, Conklin J, Gilberto González R, Alexander DC, Golland P, Edlow BL, Fischl B. Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. Neuroimage. 2021 08 15; 237:118206. PMID: 34048902.
    Citations:    Fields:    
  4. Sederevicius D, Vidal-Piñeiro D, Sørensen Ø, van Leemput K, Iglesias JE, Dalca AV, Greve DN, Fischl B, Bjørnerud A, Walhovd KB, Fjell AM. Reliability and sensitivity of two whole-brain segmentation approaches included in FreeSurfer - ASEG and SAMSEG. Neuroimage. 2021 08 15; 237:118113. PMID: 33940143.
    Citations:    Fields:    
  5. Nolan AL, Petersen C, Iacono D, Mac Donald CL, Mukherjee P, van der Kouwe A, Jain S, Stevens A, Diamond BR, Wang R, Markowitz AJ, Fischl B, Perl DP, Manley GT, Keene CD, Diaz-Arrastia R, Edlow BL. Tractography-Pathology Correlations in Traumatic Brain Injury: A TRACK-TBI Study. J Neurotrauma. 2021 Jun 15; 38(12):1620-1631. PMID: 33412995.
    Citations: 2     Fields:    
  6. Lu H, Kashani AH, Arfanakis K, Caprihan A, DeCarli C, Gold BT, Li Y, Maillard P, Satizabal CL, Stables L, Wang DJJ, Corriveau RA, Singh H, Smith EE, Fischl B, van der Kouwe A, Schwab K, Helmer KG, Greenberg SM. MarkVCID cerebral small vessel consortium: II. Neuroimaging protocols. Alzheimers Dement. 2021 04; 17(4):716-725. PMID: 33480157.
    Citations:    Fields:    
  7. Sun H, Jain A, Leone MJ, Alabsi HS, Brenner LN, Ye E, Ge W, Shao YP, Boutros CL, Wang R, Tesh RA, Magdamo C, Collens SI, Ganglberger W, Bassett IV, Meigs JB, Kalpathy-Cramer J, Li MD, Chu JT, Dougan ML, Stratton LW, Rosand J, Fischl B, Das S, Mukerji SS, Robbins GK, Westover MB. CoVA: An Acuity Score for Outpatient Screening that Predicts Coronavirus Disease 2019 Prognosis. J Infect Dis. 2021 01 04; 223(1):38-46. PMID: 33098643.
    Citations: 8     Fields:    Translation:Humans
  8. Yang J, Chen IA, Chang S, Tang J, Lee B, Kiliç K, Sunil S, Wang H, Varadarajan D, Magnain C, Chen SC, Costantini I, Pavone F, Fischl B, Boas DA. Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters. Neurophotonics. 2020 Oct; 7(4):045005. PMID: 33094126.
    Citations:    
  9. Cheng J, Dalca AV, Fischl B, Zöllei L. Cortical surface registration using unsupervised learning. Neuroimage. 2020 11 01; 221:117161. PMID: 32702486.
    Citations:    Fields:    Translation:Humans
  10. Diamond BR, Donald CLM, Frau-Pascual A, Snider SB, Fischl B, Dams-O'Connor K, Edlow BL. Optimizing the accuracy of cortical volumetric analysis in traumatic brain injury. MethodsX. 2020; 7:100994. PMID: 32760659.
    Citations: 1     
  11. Sun H, Jain A, Leone MJ, Alabsi HS, Brenner LN, Ye E, Ge W, Shao YP, Boutros CL, Wang R, Tesh RA, Magdamo C, Collens SI, Ganglberger W, Bassett IV, Meigs JB, Kalpathy-Cramer J, Li MD, Chu JT, Dougan M, Stratton L, Rosand J, Fischl B, Das S, Mukerji SS, Robbins GK, Westover MB. COVID-19 Outpatient Screening: a Prediction Score for Adverse Events. medRxiv. 2020 Jun 22. PMID: 32607523.
    Citations: 1     
  12. Henschel L, Conjeti S, Estrada S, Diers K, Fischl B, Reuter M. FastSurfer - A fast and accurate deep learning based neuroimaging pipeline. Neuroimage. 2020 10 01; 219:117012. PMID: 32526386.
    Citations: 7     Fields:    Translation:Humans
  13. Aganj I, Frau-Pascual A, Iglesias JE, Yendiki A, Augustinack JC, Salat DH, Fischl B. COMPENSATORY BRAIN CONNECTION DISCOVERY IN ALZHEIMER'S DISEASE. Proc IEEE Int Symp Biomed Imaging. 2020 Apr; 2020:283-287. PMID: 32587665.
    Citations:    
  14. Zöllei L, Iglesias JE, Ou Y, Grant PE, Fischl B. Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years. Neuroimage. 2020 09; 218:116946. PMID: 32442637.
    Citations: 5     Fields:    Translation:HumansCells
  15. Jones R, Grisot G, Augustinack J, Magnain C, Boas DA, Fischl B, Wang H, Yendiki A. Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain. Neuroimage. 2020 07 01; 214:116704. PMID: 32151760.
    Citations: 1     Fields:    Translation:Humans
  16. Iacono D, Lee P, Edlow BL, Gray N, Fischl B, Kenney K, Lew HL, Lozanoff S, Liacouras P, Lichtenberger J, Dams-O'Connor K, Cifu D, Hinds SR, Perl DP. Early-Onset Dementia in War Veterans: Brain Polypathology and Clinicopathologic Complexity. J Neuropathol Exp Neurol. 2020 02 01; 79(2):144-162. PMID: 31851313.
    Citations: 4     Fields:    Translation:Humans
  17. Brown EM, Pierce ME, Clark DC, Fischl BR, Iglesias JE, Milberg WP, McGlinchey RE, Salat DH. Test-retest reliability of FreeSurfer automated hippocampal subfield segmentation within and across scanners. Neuroimage. 2020 04 15; 210:116563. PMID: 31972281.
    Citations: 13     Fields:    Translation:Humans
  18. Ciesielski KTR, Stern ME, Diamond A, Khan S, Busa EA, Goldsmith TE, van der Kouwe A, Fischl B, Rosen BR. Maturational Changes in Human Dorsal and Ventral Visual Networks. Cereb Cortex. 2019 12 17; 29(12):5131-5149. PMID: 30927361.
    Citations: 2     Fields:    Translation:Humans
  19. Alho EJL, Alho ATDL, Horn A, Martin MDGM, Edlow BL, Fischl B, Nagy J, Fonoff ET, Hamani C, Heinsen H. The Ansa Subthalamica: A Neglected Fiber Tract. Mov Disord. 2020 01; 35(1):75-80. PMID: 31758733.
    Citations: 5     Fields:    Translation:HumansAnimals
  20. Kliemann D, Adolphs R, Tyszka JM, Fischl B, Yeo BTT, Nair R, Dubois J, Paul LK. Intrinsic Functional Connectivity of the Brain in Adults with a Single Cerebral Hemisphere. Cell Rep. 2019 11 19; 29(8):2398-2407.e4. PMID: 31747608.
    Citations: 7     Fields:    Translation:Humans
  21. Edlow BL, Mareyam A, Horn A, Polimeni JR, Witzel T, Tisdall MD, Augustinack JC, Stockmann JP, Diamond BR, Stevens A, Tirrell LS, Folkerth RD, Wald LL, Fischl B, van der Kouwe A. 7 Tesla MRI of the ex vivo human brain at 100 micron resolution. Sci Data. 2019 10 30; 6(1):244. PMID: 31666530.
    Citations: 16     Fields:    Translation:Humans
  22. Dalca AV, Yu E, Golland P, Fischl B, Sabuncu MR, Iglesias JE. Unsupervised Deep Learning for Bayesian Brain MRI Segmentation. Med Image Comput Comput Assist Interv. 2019 Oct; 11766:356-365. PMID: 32432231.
    Citations: 1     Fields:    
  23. Aganj I, Fischl B. Expected Label Value Computation for Atlas-Based Image Segmentation. Proc IEEE Int Symp Biomed Imaging. 2019 Apr; 2019:334-338. PMID: 31341547.
    Citations: 1     
  24. Jog A, Hoopes A, Greve DN, Van Leemput K, Fischl B. PSACNN: Pulse sequence adaptive fast whole brain segmentation. Neuroimage. 2019 10 01; 199:553-569. PMID: 31129303.
    Citations: 2     Fields:    Translation:Humans
  25. Cohen MA, Dilks DD, Koldewyn K, Weigelt S, Feather J, Kell AJ, Keil B, Fischl B, Zöllei L, Wald L, Saxe R, Kanwisher N. Representational similarity precedes category selectivity in the developing ventral visual pathway. Neuroimage. 2019 08 15; 197:565-574. PMID: 31077844.
    Citations: 4     Fields:    Translation:Humans
  26. Frost R, Wighton P, Karahanoglu FI, Robertson RL, Grant PE, Fischl B, Tisdall MD, van der Kouwe A. Markerless high-frequency prospective motion correction for neuroanatomical MRI. Magn Reson Med. 2019 07; 82(1):126-144. PMID: 30821010.
    Citations: 9