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Bruce R. Fischl, Ph.D.

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Other Positions
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Research
research activities and funding
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
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  1. R01EB023281 (GREVE, DOUGLAS N) Sep 15, 2016 - Jun 30, 2020
    NIH/NIBIB
    Free Surfer Development, Maintenance, and Hardening
    Role: Principal Investigator
  2. R21DK108277 (FISCHL, BRUCE) Sep 20, 2015 - Aug 31, 2017
    NIH/NIDDK
    Auto Calibration and shaped insulin delivery to lower average blood glucose
    Role: Principal Investigator
  3. R44NS089090 (SCHMANSKY, NICHOLAS JOHN) Sep 15, 2015 - Aug 31, 2018
    NIH/NINDS
    MRI brain morphometry for computer-aided detection of neurological disorders
    Role: Principal Investigator
  4. R01EB019956 (FISCHL, BRUCE) Aug 20, 2015 - Jun 30, 2019
    NIH/NIBIB
    Algorithms for MR and OCT-based Architectonic and Laminar Segmentation
    Role: Principal Investigator
  5. R21EB018907 (FISCHL, BRUCE) May 1, 2015 - Apr 30, 2017
    NIH/NIBIB
    OCTology: histology using optical coherence tomography
    Role: Principal Investigator
research resources
This researcher has shared information about their research resources in the eagle-i Network. To update or add resource records, contact eagle-i@hms.harvard.edu.
Martinos Center for Biomedical Imaging Core Facility (MGH) - Core services (6) and Instruments (8)

Bibliographic
selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Magnain C, Augustinack JC, Tirrell L, Fogarty M, Frosch MP, Boas D, Fischl B, Rockland KS. Colocalization of neurons in optical coherence microscopy and Nissl-stained histology in Brodmann's area 32 and area 21. Brain Struct Funct. 2018 Oct 17. PMID: 30328512.
    View in: PubMed
  2. Bookheimer SY, Salat DH, Terpstra M, Ances BM, Barch DM, Buckner RL, Burgess GC, Curtiss SW, Diaz-Santos M, Elam JS, Fischl B, Greve DN, Hagy HA, Harms MP, Hatch OM, Hedden T, Hodge C, Japardi KC, Kuhn TP, Ly TK, Smith SM, Somerville LH, Ugurbil K, van der Kouwe A, Van Essen D, Woods RP, Yacoub E. The Lifespan Human Connectome Project in Aging: An overview. Neuroimage. 2018 Oct 15; 185:335-348. PMID: 30332613.
    View in: PubMed
  3. Harms MP, Somerville LH, Ances BM, Andersson J, Barch DM, Bastiani M, Bookheimer SY, Brown TB, Buckner RL, Burgess GC, Coalson TS, Chappell MA, Dapretto M, Douaud G, Fischl B, Glasser MF, Greve DN, Hodge C, Jamison KW, Jbabdi S, Kandala S, Li X, Mair RW, Mangia S, Marcus D, Mascali D, Moeller S, Nichols TE, Robinson EC, Salat DH, Smith SM, Sotiropoulos SN, Terpstra M, Thomas KM, Tisdall MD, Ugurbil K, van der Kouwe A, Woods RP, Zöllei L, Van Essen DC, Yacoub E. Extending the Human Connectome Project across ages: Imaging protocols for the Lifespan Development and Aging projects. Neuroimage. 2018 Dec; 183:972-984. PMID: 30261308.
    View in: PubMed
  4. Iglesias JE, Modat M, Peter L, Stevens A, Annunziata R, Vercauteren T, Lein E, Fischl B, Ourselin S. Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. Med Image Anal. 2018 Sep 22; 50:127-144. PMID: 30282061.
    View in: PubMed
  5. Li Y, Barkovich MJ, Karch CM, Nillo RM, Fan CC, Broce IJ, Tan CH, Cuneo D, Hess CP, Dillon WP, Glenn OA, Glastonbury CM, Olney N, Yokoyama JS, Bonham LW, Miller B, Kao A, Schmansky N, Fischl B, Andreassen OA, Jernigan T, Dale A, Barkovich AJ, Desikan RS, Sugrue LP. Regionally specific TSC1 and TSC2 gene expression in tuberous sclerosis complex. Sci Rep. 2018 Sep 06; 8(1):13373. PMID: 30190613.
    View in: PubMed
  6. Aganj I, Harisinghani MG, Weissleder R, Fischl B. Unsupervised Medical Image Segmentation Based on the Local Center of Mass. Sci Rep. 2018 Aug 29; 8(1):13012. PMID: 30158534.
    View in: PubMed
  7. Iglesias JE, Insausti R, Lerma-Usabiaga G, Bocchetta M, Van Leemput K, Greve DN, van der Kouwe A, Fischl B, Caballero-Gaudes C, Paz-Alonso PM. A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. Neuroimage. 2018 Dec; 183:314-326. PMID: 30121337.
    View in: PubMed
  8. Wu J, Ngo GH, Greve D, Li J, He T, Fischl B, Eickhoff SB, Yeo BTT. Accurate nonlinear mapping between MNI volumetric and FreeSurfer surface coordinate systems. Hum Brain Mapp. 2018 May 16. PMID: 29770530.
    View in: PubMed
  9. Edlow BL, Keene CD, Perl DP, Iacono D, Folkerth RD, Stewart W, Mac Donald CL, Augustinack J, Diaz-Arrastia R, Estrada C, Flannery E, Gordon WA, Grabowski TJ, Hansen K, Hoffman J, Kroenke C, Larson EB, Lee P, Mareyam A, McNab JA, McPhee J, Moreau AL, Renz A, Richmire K, Stevens A, Tang CY, Tirrell LS, Trittschuh EH, van der Kouwe A, Varjabedian A, Wald LL, Wu O, Yendiki A, Young L, Zöllei L, Fischl B, Crane PK, Dams-O'Connor K. Multimodal Characterization of the Late Effects of Traumatic Brain Injury: A Methodological Overview of the Late Effects of Traumatic Brain Injury Project. J Neurotrauma. 2018 Jul 15; 35(14):1604-1619. PMID: 29421973.
    View in: PubMed
  10. Lindemer ER, Greve DN, Fischl B, Salat DH, Gomez-Isla T. White matter abnormalities and cognition in patients with conflicting diagnoses and CSF profiles. Neurology. 2018 Apr 24; 90(17):e1461-e1469. PMID: 29572277.
    View in: PubMed
  11. Fischl B, Sereno MI. Microstructural parcellation of the human brain. Neuroimage. 2018 Nov 15; 182:219-231. PMID: 29496612.
    View in: PubMed
  12. Kenney K, Iacono D, Edlow BL, Katz DI, Diaz-Arrastia R, Dams-O'Connor K, Daneshvar DH, Stevens A, Moreau AL, Tirrell LS, Varjabedian A, Yendiki A, van der Kouwe A, Mareyam A, McNab JA, Gordon WA, Fischl B, McKee AC, Perl DP. Dementia After Moderate-Severe Traumatic Brain Injury: Coexistence of Multiple Proteinopathies. J Neuropathol Exp Neurol. 2018 Jan 01; 77(1):50-63. PMID: 29155947.
    View in: PubMed
  13. Greve DN, Fischl B. False positive rates in surface-based anatomical analysis. Neuroimage. 2018 May 01; 171:6-14. PMID: 29288131.
    View in: PubMed
  14. Belathur Suresh M, Fischl B, Salat DH. Factors influencing accuracy of cortical thickness in the diagnosis of Alzheimer's disease. Hum Brain Mapp. 2018 04; 39(4):1500-1515. PMID: 29271096.
    View in: PubMed
  15. Wang H, Magnain C, Sakadžic S, Fischl B, Boas DA. Characterizing the optical properties of human brain tissue with high numerical aperture optical coherence tomography. Biomed Opt Express. 2017 Dec 01; 8(12):5617-5636. PMID: 29296492.
    View in: PubMed
  16. Siless V, Chang K, Fischl B, Yendiki A. AnatomiCuts: Hierarchical clustering of tractography streamlines based on anatomical similarity. Neuroimage. 2018 02 01; 166:32-45. PMID: 29100937.
    View in: PubMed
  17. Wang H, Magnain C, Wang R, Dubb J, Varjabedian A, Tirrell LS, Stevens A, Augustinack JC, Konukoglu E, Aganj I, Frosch MP, Schmahmann JD, Fischl B, Boas DA. as-PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity. Neuroimage. 2018 01 15; 165:56-68. PMID: 29017866.
    View in: PubMed
  18. Zaretskaya N, Fischl B, Reuter M, Renvall V, Polimeni JR. Advantages of cortical surface reconstruction using submillimeter 7 T MEMPRAGE. Neuroimage. 2018 01 15; 165:11-26. PMID: 28970143.
    View in: PubMed
  19. Aganj I, Fischl B. Multimodal Image Registration through Simultaneous Segmentation. IEEE Signal Process Lett. 2017 Nov; 24(11):1661-1665. PMID: 29151777.
    View in: PubMed
  20. Tong T, Aganj I, Ge T, Polimeni JR, Fischl B. Functional density and edge maps: Characterizing functional architecture in individuals and improving cross-subject registration. Neuroimage. 2017 09; 158:346-355. PMID: 28716714.
    View in: PubMed
  21. Saygin ZM, Kliemann D, Iglesias JE, van der Kouwe AJW, Boyd E, Reuter M, Stevens A, Van Leemput K, McKee A, Frosch MP, Fischl B, Augustinack JC. High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas. Neuroimage. 2017 07 15; 155:370-382. PMID: 28479476.
    View in: PubMed
  22. Bianciardi M, Strong C, Toschi N, Edlow BL, Fischl B, Brown EN, Rosen BR, Wald LL. A probabilistic template of human mesopontine tegmental nuclei from in vivo 7T MRI. Neuroimage. 2018 04 15; 170:222-230. PMID: 28476663.
    View in: PubMed
  23. Polimeni JR, Renvall V, Zaretskaya N, Fischl B. Analysis strategies for high-resolution UHF-fMRI data. Neuroimage. 2018 03; 168:296-320. PMID: 28461062.
    View in: PubMed
  24. Koley S, Chakraborty C, Mainero C, Fischl B, Aganj I. A Fast Approach to Automatic Detection of Brain Lesions. Brainlesion (2016). 2016; 10154:52-61. PMID: 29082383.
    View in: PubMed
  25. Thaker AA, Weinberg BD, Dillon WP, Hess CP, Cabral HJ, Fleischman DA, Leurgans SE, Bennett DA, Hyman BT, Albert MS, Killiany RJ, Fischl B, Dale AM, Desikan RS. Entorhinal Cortex: Antemortem Cortical Thickness and Postmortem Neurofibrillary Tangles and Amyloid Pathology. AJNR Am J Neuroradiol. 2017 May; 38(5):961-965. PMID: 28279988.
    View in: PubMed
  26. Yokoyama JS, Karch CM, Fan CC, Bonham LW, Kouri N, Ross OA, Rademakers R, Kim J, Wang Y, Höglinger GU, Müller U, Ferrari R, Hardy J, Momeni P, Sugrue LP, Hess CP, James Barkovich A, Boxer AL, Seeley WW, Rabinovici GD, Rosen HJ, Miller BL, Schmansky NJ, Fischl B, Hyman BT, Dickson DW, Schellenberg GD, Andreassen OA, Dale AM, Desikan RS. Shared genetic risk between corticobasal degeneration, progressive supranuclear palsy, and frontotemporal dementia. Acta Neuropathol. 2017 05; 133(5):825-837. PMID: 28271184.
    View in: PubMed
  27. Aganj I, Iglesias JE, Reuter M, Sabuncu MR, Fischl B. Mid-space-independent deformable image registration. Neuroimage. 2017 05 15; 152:158-170. PMID: 28242316.
    View in: PubMed
  28. Lerch JP, van der Kouwe AJ, Raznahan A, Paus T, Johansen-Berg H, Miller KL, Smith SM, Fischl B, Sotiropoulos SN. Studying neuroanatomy using MRI. Nat Neurosci. 2017 Feb 23; 20(3):314-326. PMID: 28230838.
    View in: PubMed
  29. Ding SL, Royall JJ, Sunkin SM, Ng L, Facer BA, Lesnar P, Guillozet-Bongaarts A, McMurray B, Szafer A, Dolbeare TA, Stevens A, Tirrell L, Benner T, Caldejon S, Dalley RA, Dee N, Lau C, Nyhus J, Reding M, Riley ZL, Sandman D, Shen E, van der Kouwe A, Varjabedian A, Write M, Zollei L, Dang C, Knowles JA, Koch C, Phillips JW, Sestan N, Wohnoutka P, Zielke HR, Hohmann JG, Jones AR, Bernard A, Hawrylycz MJ, Hof PR, Fischl B, LeinReference ES. Comprehensive cellular-resolution atlas of the adult human brain. J Comp Neurol. 2017 02 01; 525(2):407. PMID: 27917481.
    View in: PubMed
  30. Lindemer ER, Greve DN, Fischl BR, Augustinack JC, Salat DH. Regional staging of white matter signal abnormalities in aging and Alzheimer's disease. Neuroimage Clin. 2017; 14:156-165. PMID: 28180074.
    View in: PubMed
  31. Lindemer ER, Greve DN, Fischl B, Augustinack JC, Salat DH. Differential Regional Distribution of Juxtacortical White Matter Signal Abnormalities in Aging and Alzheimer's Disease. J Alzheimers Dis. 2017; 57(1):293-303. PMID: 28222518.
    View in: PubMed
  32. Weiner KS, Barnett MA, Lorenz S, Caspers J, Stigliani A, Amunts K, Zilles K, Fischl B, Grill-Spector K. The Cytoarchitecture of Domain-specific Regions in Human High-level Visual Cortex. Cereb Cortex. 2017 01 01; 27(1):146-161. PMID: 27909003.
    View in: PubMed
  33. Ding SL, Royall JJ, Sunkin SM, Ng L, Facer BA, Lesnar P, Guillozet-Bongaarts A, McMurray B, Szafer A, Dolbeare TA, Stevens A, Tirrell L, Benner T, Caldejon S, Dalley RA, Dee N, Lau C, Nyhus J, Reding M, Riley ZL, Sandman D, Shen E, van der Kouwe A, Varjabedian A, Wright M, Zöllei L, Dang C, Knowles JA, Koch C, Phillips JW, Sestan N, Wohnoutka P, Zielke HR, Hohmann JG, Jones AR, Bernard A, Hawrylycz MJ, Hof PR, Fischl B, Lein ES. Comprehensive cellular-resolution atlas of the adult human brain. J Comp Neurol. 2016 11 01; 524(16):3127-481. PMID: 27418273.
    View in: PubMed
  34. Sabuncu MR, Ge T, Holmes AJ, Smoller JW, Buckner RL, Fischl B. Morphometricity as a measure of the neuroanatomical signature of a trait. Proc Natl Acad Sci U S A. 2016 09 27; 113(39):E5749-56. PMID: 27613854.
    View in: PubMed
  35. Iglesias JE, Van Leemput K, Augustinack J, Insausti R, Fischl B, Reuter M. Bayesian longitudinal segmentation of hippocampal substructures in brain MRI using subject-specific atlases. Neuroimage. 2016 Nov 01; 141:542-555. PMID: 27426838.
    View in: PubMed
  36. Magnain C, Wang H, Sakadžic S, Fischl B, Boas DA. En face speckle reduction in optical coherence microscopy by frequency compounding. Opt Lett. 2016 May 01; 41(9):1925-8. PMID: 27128040.
    View in: PubMed
  37. Konukoglu E, Coutu JP, Salat DH, Fischl B. Multivariate statistical analysis of diffusion imaging parameters using partial least squares: Application to white matter variations in Alzheimer's disease. Neuroimage. 2016 07 01; 134:573-586. PMID: 27103138.
    View in: PubMed
  38. Ho NF, Iglesias JE, Sum MY, Kuswanto CN, Sitoh YY, De Souza J, Hong Z, Fischl B, Roffman JL, Zhou J, Sim K, Holt DJ. Progression from selective to general involvement of hippocampal subfields in schizophrenia. Mol Psychiatry. 2017 01; 22(1):142-152. PMID: 26903271.
    View in: PubMed
  39. Larvie M, Fischl B. Volumetric and fiber-tracing MRI methods for gray and white matter. Handb Clin Neurol. 2016; 135:39-60. PMID: 27432659.
    View in: PubMed
  40. Yendiki A, Reuter M, Wilkens P, Rosas HD, Fischl B. Joint reconstruction of white-matter pathways from longitudinal diffusion MRI data with anatomical priors. Neuroimage. 2016 Feb 15; 127:277-286. PMID: 26717853.
    View in: PubMed
  41. Tisdall MD, Reuter M, Qureshi A, Buckner RL, Fischl B, van der Kouwe AJW. Prospective motion correction with volumetric navigators (vNavs) reduces the bias and variance in brain morphometry induced by subject motion. Neuroimage. 2016 Feb 15; 127:11-22. PMID: 26654788; PMCID: PMC4754677 [Available on 02/15/17].
    View in: PubMed, PubMed Central
  42. Aganj I, Iglesias JE, Reuter M, Sabuncu MR, Fischl B. Mid-Space-Independent Symmetric Data Term for Pairwise Deformable Image Registration. Med Image Comput Comput Assist Interv. 2015 Oct; 9350:263-271. PMID: 26835520.
    View in: PubMed
  43. Cash DM, Frost C, Iheme LO, Ünay D, Kandemir M, Fripp J, Salvado O, Bourgeat P, Reuter M, Fischl B, Lorenzi M, Frisoni GB, Pennec X, Pierson RK, Gunter JL, Senjem ML, Jack CR, Guizard N, Fonov VS, Collins DL, Modat M, Cardoso MJ, Leung KK, Wang H, Das SR, Yushkevich PA, Malone IB, Fox NC, Schott JM, Ourselin S. Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge. Neuroimage. 2015 Dec; 123:149-64. PMID: 26275383.
    View in: PubMed
  44. Ganz M, Greve DN, Fischl B, Konukoglu E. Relevant feature set estimation with a knock-out strategy and random forests. Neuroimage. 2015 Nov 15; 122:131-48. PMID: 26272728; PMCID: PMC4618061 [Available on 11/15/16].
    View in: PubMed, PubMed Central
  45. Boes AD, Caruso P, Duhaime AC, Fischl B. FreeSurfer is useful for early detection of Rasmussen's encephalitis prior to obvious atrophy. Dev Med Child Neurol. 2016 Feb; 58(2):209-10. PMID: 26174006; PMCID: PMC4825051 [Available on 02/01/17].
    View in: PubMed, PubMed Central
  46. Holmes AJ, Hollinshead MO, O'Keefe TM, Petrov VI, Fariello GR, Wald LL, Fischl B, Rosen BR, Mair RW, Roffman JL, Smoller JW, Buckner RL. Brain Genomics Superstruct Project initial data release with structural, functional, and behavioral measures. Sci Data. 2015; 2:150031. PMID: 26175908; PMCID: PMC4493828.
    View in: PubMed, PubMed Central
  47. Lindemer ER, Salat DH, Smith EE, Nguyen K, Fischl B, Greve DN. White matter signal abnormality quality differentiates mild cognitive impairment that converts to Alzheimer's disease from nonconverters. Neurobiol Aging. 2015 Sep; 36(9):2447-57. PMID: 26095760; PMCID: PMC4523418.
    View in: PubMed, PubMed Central
  48. Iglesias JE, Augustinack JC, Nguyen K, Player CM, Player A, Wright M, Roy N, Frosch MP, McKee AC, Wald LL, Fischl B, Van Leemput K. A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI. Neuroimage. 2015 Jul 15; 115:117-37. PMID: 25936807; PMCID: PMC4461537.
    View in: PubMed, PubMed Central
  49. Iglesias JE, Van Leemput K, Bhatt P, Casillas C, Dutt S, Schuff N, Truran-Sacrey D, Boxer A, Fischl B. Bayesian segmentation of brainstem structures in MRI. Neuroimage. 2015 Jun; 113:184-95. PMID: 25776214; PMCID: PMC4434226.
    View in: PubMed, PubMed Central
  50. de Macedo Rodrigues K, Ben-Avi E, Sliva DD, Choe MS, Drottar M, Wang R, Fischl B, Grant PE, Zöllei L. A FreeSurfer-compliant consistent manual segmentation of infant brains spanning the 0-2 year age range. Front Hum Neurosci. 2015; 9:21. PMID: 25741260; PMCID: PMC4332305.
    View in: PubMed, PubMed Central
  51. Magnain C, Augustinack JC, Konukoglu E, Frosch MP, Sakadžic S, Varjabedian A, Garcia N, Wedeen VJ, Boas DA, Fischl B. Optical coherence tomography visualizes neurons in human entorhinal cortex. Neurophotonics. 2015 Feb 09; 2(1):015004. PMID: 25741528.
    View in: PubMed
  52. Hibar DP, Stein JL, Renteria ME, Arias-Vasquez A, Desrivières S, Jahanshad N, Toro R, Wittfeld K, Abramovic L, Andersson M, Aribisala BS, Armstrong NJ, Bernard M, Bohlken MM, Boks MP, Bralten J, Brown AA, Chakravarty MM, Chen Q, Ching CR, Cuellar-Partida G, den Braber A, Giddaluru S, Goldman AL, Grimm O, Guadalupe T, Hass J, Woldehawariat G, Holmes AJ, Hoogman M, Janowitz D, Jia T, Kim S, Klein M, Kraemer B, Lee PH, Olde Loohuis LM, Luciano M, Macare C, Mather KA, Mattheisen M, Milaneschi Y, Nho K, Papmeyer M, Ramasamy A, Risacher SL, Roiz-Santiañez R, Rose EJ, Salami A, Sämann PG, Schmaal L, Schork AJ, Shin J, Strike LT, Teumer A, van Donkelaar MM, van Eijk KR, Walters RK, Westlye LT, Whelan CD, Winkler AM, Zwiers MP, Alhusaini S, Athanasiu L, Ehrlich S, Hakobjan MM, Hartberg CB, Haukvik UK, Heister AJ, Hoehn D, Kasperaviciute D, Liewald DC, Lopez LM, Makkinje RR, Matarin M, Naber MA, McKay DR, Needham M, Nugent AC, Pütz B, Royle NA, Shen L, Sprooten E, Trabzuni D, van der Marel SS, van Hulzen KJ, Walton E, Wolf C, Almasy L, Ames D, Arepalli S, Assareh AA, Bastin ME, Brodaty H, Bulayeva KB, Carless MA, Cichon S, Corvin A, Curran JE, Czisch M, de Zubicaray GI, Dillman A, Duggirala R, Dyer TD, Erk S, Fedko IO, Ferrucci L, Foroud TM, Fox PT, Fukunaga M, Gibbs JR, Göring HH, Green RC, Guelfi S, Hansell NK, Hartman CA, Hegenscheid K, Heinz A, Hernandez DG, Heslenfeld DJ, Hoekstra PJ, Holsboer F, Homuth G, Hottenga JJ, Ikeda M, Jack CR, Jenkinson M, Johnson R, Kanai R, Keil M, Kent JW, Kochunov P, Kwok JB, Lawrie SM, Liu X, Longo DL, McMahon KL, Meisenzahl E, Melle I, Mohnke S, Montgomery GW, Mostert JC, Mühleisen TW, Nalls MA, Nichols TE, Nilsson LG, Nöthen MM, Ohi K, Olvera RL, Perez-Iglesias R, Pike GB, Potkin SG, Reinvang I, Reppermund S, Rietschel M, Romanczuk-Seiferth N, Rosen GD, Rujescu D, Schnell K, Schofield PR, Smith C, Steen VM, Sussmann JE, Thalamuthu A, Toga AW, Traynor BJ, Troncoso J, Turner JA, Valdés Hernández MC, van 't Ent D, van der Brug M, van der Wee NJ, van Tol MJ, Veltman DJ, Wassink TH, Westman E, Zielke RH, Zonderman AB, Ashbrook DG, Hager R, Lu L, McMahon FJ, Morris DW, Williams RW, Brunner HG, Buckner RL, Buitelaar JK, Cahn W, Calhoun VD, Cavalleri GL, Crespo-Facorro B, Dale AM, Davies GE, Delanty N, Depondt C, Djurovic S, Drevets WC, Espeseth T, Gollub RL, Ho BC, Hoffmann W, Hosten N, Kahn RS, Le Hellard S, Meyer-Lindenberg A, Müller-Myhsok B, Nauck M, Nyberg L, Pandolfo M, Penninx BW, Roffman JL, Sisodiya SM, Smoller JW, van Bokhoven H, van Haren NE, Völzke H, Walter H, Weiner MW, Wen W, White T, Agartz I, Andreassen OA, Blangero J, Boomsma DI, Brouwer RM, Cannon DM, Cookson MR, de Geus EJ, Deary IJ, Donohoe G, Fernández G, Fisher SE, Francks C, Glahn DC, Grabe HJ, Gruber O, Hardy J, Hashimoto R, Hulshoff Pol HE, Jönsson EG, Kloszewska I, Lovestone S, Mattay VS, Mecocci P, McDonald C, McIntosh AM, Ophoff RA, Paus T, Pausova Z, Ryten M, Sachdev PS, Saykin AJ, Simmons A, Singleton A, Soininen H, Wardlaw JM, Weale ME, Weinberger DR, Adams HH, Launer LJ, Seiler S, Schmidt R, Chauhan G, Satizabal CL, Becker JT, Yanek L, van der Lee SJ, Ebling M, Fischl B, Longstreth WT, Greve D, Schmidt H, Nyquist P, Vinke LN, van Duijn CM, Xue L, Mazoyer B, Bis JC, Gudnason V, Seshadri S, Ikram MA, Martin NG, Wright MJ, Schumann G, Franke B, Thompson PM, Medland SE. Common genetic variants influence human subcortical brain structures. Nature. 2015 Apr 09; 520(7546):224-9. PMID: 25607358.
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  53. Wachinger C, Golland P, Kremen W, Fischl B, Reuter M. BrainPrint: a discriminative characterization of brain morphology. Neuroimage. 2015 Apr 01; 109:232-48. PMID: 25613439; PMCID: PMC4340729.
    View in: PubMed, PubMed Central
  54. Reuter M, Tisdall MD, Qureshi A, Buckner RL, van der Kouwe AJW, Fischl B. Head motion during MRI acquisition reduces gray matter volume and thickness estimates. Neuroimage. 2015 Feb 15; 107:107-115. PMID: 25498430.
    View in: PubMed
  55. Wachinger C, Golland P, Magnain C, Fischl B, Reuter M. Multi-modal robust inverse-consistent linear registration. Hum Brain Mapp. 2015 Apr; 36(4):1365-80. PMID: 25470798; PMCID: PMC4732282.
    View in: PubMed, PubMed Central
  56. Iglesias JE, Sabuncu MR, Aganj I, Bhatt P, Casillas C, Salat D, Boxer A, Fischl B, Van Leemput K. An algorithm for optimal fusion of atlases with different labeling protocols. Neuroimage. 2015 Feb 01; 106:451-63. PMID: 25463466; PMCID: PMC4286284.
    View in: PubMed, PubMed Central
  57. Shafee R, Buckner RL, Fischl B. Gray matter myelination of 1555 human brains using partial volume corrected MRI images. Neuroimage. 2015 Jan 15; 105:473-85. PMID: 25449739; PMCID: PMC4262571.
    View in: PubMed, PubMed Central
  58. Aganj I, Reuter M, Sabuncu MR, Fischl B. Avoiding symmetry-breaking spatial non-uniformity in deformable image registration via a quasi-volume-preserving constraint. Neuroimage. 2015 Feb 01; 106:238-51. PMID: 25449738; PMCID: PMC4286290.
    View in: PubMed, PubMed Central
  59. Augustinack JC, van der Kouwe AJ, Salat DH, Benner T, Stevens AA, Annese J, Fischl B, Frosch MP, Corkin S. H.M.'s contributions to neuroscience: a review and autopsy studies. Hippocampus. 2014 Nov; 24(11):1267-86. PMID: 25154857.
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  60. Wang H, Zhu J, Reuter M, Vinke LN, Yendiki A, Boas DA, Fischl B, Akkin T. Cross-validation of serial optical coherence scanning and diffusion tensor imaging: a study on neural fiber maps in human medulla oblongata. Neuroimage. 2014 Oct 15; 100:395-404. PMID: 24954840; PMCID: PMC4142686.
    View in: PubMed, PubMed Central
  61. Sabuncu MR, Bernal-Rusiel JL, Reuter M, Greve DN, Fischl B. Event time analysis of longitudinal neuroimage data. Neuroimage. 2014 Aug 15; 97:9-18. PMID: 24736175; PMCID: PMC4078261.
    View in: PubMed, PubMed Central
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  212. Spiridon M, Fischl B, Kanwisher N. Location and spatial profile of category-specific regions in human extrastriate cortex. Hum Brain Mapp. 2006 Jan; 27(1):77-89. PMID: 15966002; PMCID: PMC3264054.
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  213. Salat DH, van der Kouwe AJ, Tuch DS, Quinn BT, Fischl B, Dale AM, Corkin S. Neuroimaging H.M.: a 10-year follow-up examination. Hippocampus. 2006; 16(11):936-45. PMID: 17016801.
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  214. Salat DH, Tuch DS, Hevelone ND, Fischl B, Corkin S, Rosas HD, Dale AM. Age-related changes in prefrontal white matter measured by diffusion tensor imaging. Ann N Y Acad Sci. 2005 Dec; 1064:37-49. PMID: 16394146.
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  215. Lazar SW, Kerr CE, Wasserman RH, Gray JR, Greve DN, Treadway MT, McGarvey M, Quinn BT, Dusek JA, Benson H, Rauch SL, Moore CI, Fischl B. Meditation experience is associated with increased cortical thickness. Neuroreport. 2005 Nov 28; 16(17):1893-7. PMID: 16272874; PMCID: PMC1361002.
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  216. Rauch SL, Milad MR, Orr SP, Quinn BT, Fischl B, Pitman RK. Orbitofrontal thickness, retention of fear extinction, and extraversion. Neuroreport. 2005 Nov 28; 16(17):1909-12. PMID: 16272877.
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  217. Jovicich J, Czanner S, Greve D, Haley E, van der Kouwe A, Gollub R, Kennedy D, Schmitt F, Brown G, Macfall J, Fischl B, Dale A. Reliability in multi-site structural MRI studies: effects of gradient non-linearity correction on phantom and human data. Neuroimage. 2006 Apr 01; 30(2):436-43. PMID: 16300968.
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  218. Walhovd KB, Fjell AM, Reinvang I, Lundervold A, Dale AM, Eilertsen DE, Quinn BT, Salat D, Makris N, Fischl B. Effects of age on volumes of cortex, white matter and subcortical structures. Neurobiol Aging. 2005 Oct; 26(9):1261-70; discussion 1275-8. PMID: 16005549.
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  219. Fjell AM, Walhovd KB, Reinvang I, Lundervold A, Salat D, Quinn BT, Fischl B, Dale AM. Selective increase of cortical thickness in high-performing elderly--structural indices of optimal cognitive aging. Neuroimage. 2006 Feb 01; 29(3):984-94. PMID: 16176876.
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  220. Rosas HD, Hevelone ND, Zaleta AK, Greve DN, Salat DH, Fischl B. Regional cortical thinning in preclinical Huntington disease and its relationship to cognition. Neurology. 2005 Sep 13; 65(5):745-7. PMID: 16157910.
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  221. Martinussen M, Fischl B, Larsson HB, Skranes J, Kulseng S, Vangberg TR, Vik T, Brubakk AM, Haraldseth O, Dale AM. Cerebral cortex thickness in 15-year-old adolescents with low birth weight measured by an automated MRI-based method. Brain. 2005 Nov; 128(Pt 11):2588-96. PMID: 16123146.
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  222. van der Kouwe AJ, Benner T, Fischl B, Schmitt F, Salat DH, Harder M, Sorensen AG, Dale AM. On-line automatic slice positioning for brain MR imaging. Neuroimage. 2005 Aug 01; 27(1):222-30. PMID: 15886023.
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  223. Milad MR, Quinn BT, Pitman RK, Orr SP, Fischl B, Rauch SL. Thickness of ventromedial prefrontal cortex in humans is correlated with extinction memory. Proc Natl Acad Sci U S A. 2005 Jul 26; 102(30):10706-11. PMID: 16024728; PMCID: PMC1180773.
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  224. Augustinack JC, van der Kouwe AJ, Blackwell ML, Salat DH, Wiggins CJ, Frosch MP, Wiggins GC, Potthast A, Wald LL, Fischl BR. Detection of entorhinal layer II using 7Tesla [corrected] magnetic resonance imaging. Ann Neurol. 2005 Apr; 57(4):489-94. PMID: 15786476; PMCID: PMC3857582.
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  225. Fjell AM, Walhovd KB, Reinvang I, Lundervold A, Dale AM, Quinn BT, Makris N, Fischl B. Age does not increase rate of forgetting over weeks--neuroanatomical volumes and visual memory across the adult life-span. J Int Neuropsychol Soc. 2005 Jan; 11(1):2-15. PMID: 15686603.
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  226. Walhovd KB, Fjell AM, Reinvang I, Lundervold A, Fischl B, Salat D, Quinn BT, Makris N, Dale AM. Cortical volume and speed-of-processing are complementary in prediction of performance intelligence. Neuropsychologia. 2005; 43(5):704-13. PMID: 15721183.
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  227. Ségonne F, Grimson E, Fischl B. A genetic algorithm for the topology correction of cortical surfaces. Inf Process Med Imaging. 2005; 19:393-405. PMID: 17354712.
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  228. Salat DH, Tuch DS, Greve DN, van der Kouwe AJ, Hevelone ND, Zaleta AK, Rosen BR, Fischl B, Corkin S, Rosas HD, Dale AM. Age-related alterations in white matter microstructure measured by diffusion tensor imaging. Neurobiol Aging. 2005 Aug-Sep; 26(8):1215-27. PMID: 15917106.
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  229. Gold BT, Balota DA, Cortese MJ, Sergent-Marshall SD, Snyder AZ, Salat DH, Fischl B, Dale AM, Morris JC, Buckner RL. Differing neuropsychological and neuroanatomical correlates of abnormal reading in early-stage semantic dementia and dementia of the Alzheimer type. Neuropsychologia. 2005; 43(6):833-46. PMID: 15716156.
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  230. Walhovd KB, Fjell AM, Reinvang I, Lundervold A, Fischl B, Quinn BT, Dale AM. Size does matter in the long run: hippocampal and cortical volume predict recall across weeks. Neurology. 2004 Oct 12; 63(7):1193-7. PMID: 15477537.
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  231. Ségonne F, Dale AM, Busa E, Glessner M, Salat D, Hahn HK, Fischl B. A hybrid approach to the skull stripping problem in MRI. Neuroimage. 2004 Jul; 22(3):1060-75. PMID: 15219578.
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  232. Rauch SL, Wright CI, Martis B, Busa E, McMullin KG, Shin LM, Dale AM, Fischl B. A magnetic resonance imaging study of cortical thickness in animal phobia. Biol Psychiatry. 2004 May 01; 55(9):946-52. PMID: 15110739.
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  233. Salat DH, Buckner RL, Snyder AZ, Greve DN, Desikan RS, Busa E, Morris JC, Dale AM, Fischl B. Thinning of the cerebral cortex in aging. Cereb Cortex. 2004 Jul; 14(7):721-30. PMID: 15054051.
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  234. Knake S, Grant PE, Stufflebeam SM, Wald LL, Shiraishi H, Rosenow F, Schomer DL, Fischl B, Dale AM, Halgren E. Aids to telemetry in the presurgical evaluation of epilepsy patients: MRI, MEG and other non-invasive imaging techniques. Suppl Clin Neurophysiol. 2004; 57:494-502. PMID: 16106650.
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  235. Fischl B, van der Kouwe A, Destrieux C, Halgren E, Ségonne F, Salat DH, Busa E, Seidman LJ, Goldstein J, Kennedy D, Caviness V, Makris N, Rosen B, Dale AM. Automatically parcellating the human cerebral cortex. Cereb Cortex. 2004 Jan; 14(1):11-22. PMID: 14654453.
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  236. Fischl B, Salat DH, van der Kouwe AJ, Makris N, Ségonne F, Quinn BT, Dale AM. Sequence-independent segmentation of magnetic resonance images. Neuroimage. 2004; 23 Suppl 1:S69-84. PMID: 15501102.
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  237. Kuperberg GR, Broome MR, McGuire PK, David AS, Eddy M, Ozawa F, Goff D, West WC, Williams SC, van der Kouwe AJ, Salat DH, Dale AM, Fischl B. Regionally localized thinning of the cerebral cortex in schizophrenia. Arch Gen Psychiatry. 2003 Sep; 60(9):878-88. PMID: 12963669.
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  238. Golland P, Fischl B. Permutation tests for classification: towards statistical significance in image-based studies. Inf Process Med Imaging. 2003 Jul; 18:330-41. PMID: 15344469.
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  239. Sailer M, Fischl B, Salat D, Tempelmann C, Schönfeld MA, Busa E, Bodammer N, Heinze HJ, Dale A. Focal thinning of the cerebral cortex in multiple sclerosis. Brain. 2003 Aug; 126(Pt 8):1734-44. PMID: 12805100.
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  240. Makris N, Hodge SM, Haselgrove C, Kennedy DN, Dale A, Fischl B, Rosen BR, Harris G, Caviness VS, Schmahmann JD. Human cerebellum: surface-assisted cortical parcellation and volumetry with magnetic resonance imaging. J Cogn Neurosci. 2003 May 15; 15(4):584-99. PMID: 12803969.
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  241. Rosas HD, Liu AK, Hersch S, Glessner M, Ferrante RJ, Salat DH, van der Kouwe A, Jenkins BG, Dale AM, Fischl B. Regional and progressive thinning of the cortical ribbon in Huntington's disease. Neurology. 2002 Mar 12; 58(5):695-701. PMID: 11889230.
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  242. Fischl B, Salat DH, Busa E, Albert M, Dieterich M, Haselgrove C, van der Kouwe A, Killiany R, Kennedy D, Klaveness S, Montillo A, Makris N, Rosen B, Dale AM. Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain. Neuron. 2002 Jan 31; 33(3):341-55. PMID: 11832223.
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  243. Hadjikhani N, Sanchez Del Rio M, Wu O, Schwartz D, Bakker D, Fischl B, Kwong KK, Cutrer FM, Rosen BR, Tootell RB, Sorensen AG, Moskowitz MA. Mechanisms of migraine aura revealed by functional MRI in human visual cortex. Proc Natl Acad Sci U S A. 2001 Apr 10; 98(8):4687-92. PMID: 11287655; PMCID: PMC31895.
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  244. Sasaki Y, Hadjikhani N, Fischl B, Liu AK, Marrett S, Dale AM, Tootell RB, Marret S. Local and global attention are mapped retinotopically in human occipital cortex. Proc Natl Acad Sci U S A. 2001 Feb 13; 98(4):2077-82. PMID: 11172078; PMCID: PMC29384.
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  245. Bar M, Tootell RB, Schacter DL, Greve DN, Fischl B, Mendola JD, Rosen BR, Dale AM. Cortical mechanisms specific to explicit visual object recognition. Neuron. 2001 Feb; 29(2):529-35. PMID: 11239441.
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  246. Fischl B, Liu A, Dale AM. Automated manifold surgery: constructing geometrically accurate and topologically correct models of the human cerebral cortex. IEEE Trans Med Imaging. 2001 Jan; 20(1):70-80. PMID: 11293693.
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  247. Fischl B, Dale AM. Measuring the thickness of the human cerebral cortex from magnetic resonance images. Proc Natl Acad Sci U S A. 2000 Sep 26; 97(20):11050-5. PMID: 10984517; PMCID: PMC27146.
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  248. Moore CI, Stern CE, Corkin S, Fischl B, Gray AC, Rosen BR, Dale AM. Segregation of somatosensory activation in the human rolandic cortex using fMRI. J Neurophysiol. 2000 Jul; 84(1):558-69. PMID: 10899227.
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  249. Dale AM, Liu AK, Fischl BR, Buckner RL, Belliveau JW, Lewine JD, Halgren E. Dynamic statistical parametric mapping: combining fMRI and MEG for high-resolution imaging of cortical activity. Neuron. 2000 Apr; 26(1):55-67. PMID: 10798392.
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  250. Mendola JD, Dale AM, Fischl B, Liu AK, Tootell RB. The representation of illusory and real contours in human cortical visual areas revealed by functional magnetic resonance imaging. J Neurosci. 1999 Oct 01; 19(19):8560-72. PMID: 10493756.
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  251. Dale AM, Fischl B, Sereno MI. Cortical surface-based analysis. I. Segmentation and surface reconstruction. Neuroimage. 1999 Feb; 9(2):179-94. PMID: 9931268.
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  252. Fischl B, Sereno MI, Dale AM. Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system. Neuroimage. 1999 Feb; 9(2):195-207. PMID: 9931269.
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  253. Fischl B, Sereno MI, Tootell RB, Dale AM. High-resolution intersubject averaging and a coordinate system for the cortical surface. Hum Brain Mapp. 1999; 8(4):272-84. PMID: 10619420.
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  254. Schwartz EL, Cohen MA, Fischl B. The Local Structure of Space-variant Images. Neural Netw. 1997 Jul; 10(5):815-831. PMID: 12662872.
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  255. Pfeiffer W, Kockott G, Fischl B, Schleuning G. [Adverse effects of long-term psychopharmacologic therapy on sexual functions]. Psychiatr Prax. 1991 May; 18(3):92-8. PMID: 1886955.
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Funded by the NIH/NCATS Clinical and Translational Science Award (CTSA) program, grant number UL1TR001102, and through institutional support from Harvard University, Harvard Medical School, Harvard T.H. Chan School of Public Health, Beth Israel Deaconess Medical Center, Boston Children's Hospital, Brigham and Women's Hospital, Massachusetts General Hospital and the Dana Farber Cancer Institute.