Harvard Catalyst Profiles

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Simon Keith Warfield, Ph.D.

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Research
The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. S10OD025111 (WARFIELD, SIMON K) Mar 6, 2018 - Mar 5, 2019
    NIH
    Acquisition of a Siemens 3T MRI for Research Imaging
    Role: Principal Investigator
  2. R44MH086984 (NEVO, EREZ) Sep 23, 2016 - Aug 31, 2019
    NIH/NIMH
    Prospective/Retrospective Motion Correction System for Motion Robust Pediatric MRI
    Role: Co-Principal Investigator
  3. R01EB019483 (WARFIELD, SIMON K) Jul 1, 2015 - Apr 30, 2019
    NIH/NIBIB
    Improved Motion Robust MRI of Children
    Role: Principal Investigator
  4. R01DK100404 (WARFIELD, SIMON K) Jan 8, 2014 - Dec 31, 2018
    NIH/NIDDK
    Novel MRI Imaging Tools and Software for Assessing Pediatric Crohn's Disease
    Role: Co-Principal Investigator
  5. R01NS079788 (WARFIELD, SIMON K) Aug 1, 2013 - Jul 31, 2018
    NIH/NINDS
    MRI Biomarkers of Patients with Tuberous Sclerosis Complex and Autism
    Role: Principal Investigator

Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Rollins CK, Ortinau CM, Stopp C, Friedman KG, Tworetzky W, Gagoski B, Velasco-Annis C, Afacan O, Vasung L, Beaute JI, Rofeberg V, Estroff JA, Grant PE, Soul JS, Yang E, Wypij D, Gholipour A, Warfield SK, Newburger JW. Regional Brain Growth Trajectories in Fetuses with Congenital Heart Disease. Ann Neurol. 2020 Oct 21. PMID: 33084086.
    Citations:    Fields:    
  2. Wallace TE, Polimeni JR, Stockmann JP, Hoge WS, Kober T, Warfield SK, Afacan O. Dynamic distortion correction for functional MRI using FID navigators. Magn Reson Med. 2020 Sep 24. PMID: 32970869.
    Citations:    Fields:    
  3. Sui Y, Afacan O, Gholipour A, Warfield SK. SLIMM: Slice localization integrated MRI monitoring. Neuroimage. 2020 Aug 24; 223:117280. PMID: 32853815.
    Citations:    Fields:    
  4. Ning L, Bonet-Carne E, Grussu F, Sepehrband F, Kaden E, Veraart J, Blumberg SB, Khoo CS, Palombo M, Kokkinos I, Alexander DC, Coll-Font J, Scherrer B, Warfield SK, Karayumak SC, Rathi Y, Koppers S, Weninger L, Ebert J, Merhof D, Moyer D, Pietsch M, Christiaens D, Gomes Teixeira RA, Tournier JD, Schilling KG, Huo Y, Nath V, Hansen C, Blaber J, Landman BA, Zhylka A, Pluim JPW, Parker G, Rudrapatna U, Evans J, Charron C, Jones DK, Tax CMW. Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results. Neuroimage. 2020 Jul 13; 221:117128. PMID: 32673745.
    Citations:    Fields:    
  5. Jaimes C, Rofeberg V, Stopp C, Ortinau CM, Gholipour A, Friedman KG, Tworetzky W, Estroff J, Newburger JW, Wypij D, Warfield SK, Yang E, Rollins CK. Association of Isolated Congenital Heart Disease with Fetal Brain Maturation. AJNR Am J Neuroradiol. 2020 08; 41(8):1525-1531. PMID: 32646947.
    Citations:    Fields:    
  6. Vasung L, Rollins CK, Velasco-Annis C, Yun HJ, Zhang J, Warfield SK, Feldman HA, Gholipour A, Grant PE. Spatiotemporal Differences in the Regional Cortical Plate and Subplate Volume Growth during Fetal Development. Cereb Cortex. 2020 Jun 30; 30(8):4438-4453. PMID: 32147720.
    Citations:    Fields:    
  7. Campanale CM, Scherrer B, Afacan O, Majeed A, Warfield SK, Sanders SP. Myofiber organization in the failing systemic right ventricle. J Cardiovasc Magn Reson. 2020 06 29; 22(1):49. PMID: 32600420.
    Citations:    Fields:    Translation:HumansCells
  8. Karimi D, Dou H, Warfield SK, Gholipour A. Deep learning with noisy labels: Exploring techniques and remedies in medical image analysis. Med Image Anal. 2020 10; 65:101759. PMID: 32623277.
    Citations: 2     Fields:    
  9. Karimi D, Peters JM, Ouaalam A, Prabhu SP, Sahin M, Krueger DA, Kolevzon A, Eng C, Warfield SK, Gholipour A. LEARNING TO DETECT BRAIN LESIONS FROM NOISY ANNOTATIONS. Proc IEEE Int Symp Biomed Imaging. 2020 Apr; 2020:1910-1914. PMID: 32879655.
    Citations:    
  10. Taquet M, Smith SM, Prohl AK, Peters JM, Warfield SK, Scherrer B, Harrison PJ. A structural brain network of genetic vulnerability to psychiatric illness. Mol Psychiatry. 2020 May 06. PMID: 32372008.
    Citations:    Fields:    
  11. Jaimes C, Machado-Rivas F, Afacan O, Khan S, Marami B, Ortinau CM, Rollins CK, Velasco-Annis C, Warfield SK, Gholipour A. In vivo characterization of emerging white matter microstructure in the fetal brain in the third trimester. Hum Brain Mapp. 2020 Aug 15; 41(12):3177-3185. PMID: 32374063.
    Citations: 1     Fields:    
  12. Afacan O, Hoge WS, Wallace TE, Gholipour A, Kurugol S, Warfield SK. Simultaneous Motion and Distortion Correction Using Dual-Echo Diffusion-Weighted MRI. J Neuroimaging. 2020 05; 30(3):276-285. PMID: 32374453.
    Citations:    Fields:    
  13. Kurugol S, Afacan O, Lee RS, Seager CM, Ferguson MA, Stein DR, Nichols RC, Dugan M, Stemmer A, Warfield SK, Chow JS. Correction to: Prospective pediatric study comparing glomerular filtration rate estimates based on motion-robust dynamic contrast-enhanced magnetic resonance imaging and serum creatinine (eGFR) to 99mTc DTPA. Pediatr Radiol. 2020 May; 50(5):755-756. PMID: 32170349.
    Citations:    Fields:    
  14. Scherrer B, Prohl AK, Taquet M, Kapur K, Peters JM, Tomas-Fernandez X, Davis PE, M Bebin E, Krueger DA, Northrup H, Y Wu J, Sahin M, Warfield SK. The Connectivity Fingerprint of the Fusiform Gyrus Captures the Risk of Developing Autism in Infants with Tuberous Sclerosis Complex. Cereb Cortex. 2020 04 14; 30(4):2199-2214. PMID: 31812987.
    Citations:    Fields:    
  15. Vasung L, Rollins CK, Yun HJ, Velasco-Annis C, Zhang J, Wagstyl K, Evans A, Warfield SK, Feldman HA, Grant PE, Gholipour A. Quantitative In vivo MRI Assessment of Structural Asymmetries and Sexual Dimorphism of Transient Fetal Compartments in the Human Brain. Cereb Cortex. 2020 03 14; 30(3):1752-1767. PMID: 31602456.
    Citations: 2     Fields:    
  16. Bassell J, Srivastava S, Prohl AK, Scherrer B, Kapur K, Filip-Dhima R, Berry-Kravis E, Soorya L, Thurm A, Powell CM, Bernstein JA, Buxbaum JD, Kolevzon A, Warfield SK, Sahin M. Diffusion Tensor Imaging Abnormalities in the Uncinate Fasciculus and Inferior Longitudinal Fasciculus in Phelan-McDermid Syndrome. Pediatr Neurol. 2020 05; 106:24-31. PMID: 32107139.
    Citations:    Fields:    
  17. Kurugol S, Afacan O, Lee RS, Seager CM, Ferguson MA, Stein DR, Nichols RC, Dugan M, Stemmer A, Warfield SK, Chow JS. Prospective pediatric study comparing glomerular filtration rate estimates based on motion-robust dynamic contrast-enhanced magnetic resonance imaging and serum creatinine (eGFR) to 99mTc DTPA. Pediatr Radiol. 2020 05; 50(5):698-705. PMID: 31984436.
    Citations:    Fields:    
  18. Peters JM, Hyde DE, Chu CJ, Boom M, Scherrer B, Madsen JR, Stone SS, Ouaalam H, Prabhu SP, Sahin M, Warfield SK. Lesion-Constrained Electrical Source Imaging: A Novel Approach in Epilepsy Surgery for Tuberous Sclerosis Complex. J Clin Neurophysiol. 2020 Jan; 37(1):79-86. PMID: 31261349.
    Citations:    Fields:    Translation:Humans
  19. Prohl AK, Scherrer B, Tomas-Fernandez X, Davis PE, Filip-Dhima R, Prabhu SP, Peters JM, Bebin EM, Krueger DA, Northrup H, Wu JY, Sahin M, Warfield SK. Early white matter development is abnormal in tuberous sclerosis complex patients who develop autism spectrum disorder. J Neurodev Disord. 2019 12 16; 11(1):36. PMID: 31838998.
    Citations: 5     Fields:    Translation:Humans
  20. Coll-Font J, Afacan O, Chow JS, Lee RS, Stemmer A, Warfield SK, Kurugol S. Bulk motion-compensated DCE-MRI for functional imaging of kidneys in newborns. J Magn Reson Imaging. 2020 07; 52(1):207-216. PMID: 31837071.
    Citations:    Fields:    
  21. Kurugol S, Seager CM, Thaker H, Coll-Font J, Afacan O, Nichols RC, Warfield SK, Lee RS, Chow JS. Feed and wrap magnetic resonance urography provides anatomic and functional imaging in infants without anesthesia. J Pediatr Urol. 2020 Feb; 16(1):116-120. PMID: 31889687.
    Citations:    Fields:    
  22. Gholipour A, Warfield SK. Motion-corrected foetal cardiac MRI. Nat Biomed Eng. 2019 11; 3(11):852-854. PMID: 31645682.
    Citations:    Fields:    Translation:Humans
  23. Sui Y, Afacan O, Gholipour A, Warfield SK. Isotropic MRI Super-Resolution Reconstruction with Multi-scale Gradient Field Prior. Med Image Comput Comput Assist Interv. 2019 Oct; 11766:3-11. PMID: 32832937.
    Citations:    Fields:    
  24. Afacan O, Estroff JA, Yang E, Barnewolt CE, Connolly SA, Parad RB, Mulkern RV, Warfield SK, Gholipour A. Fetal Echoplanar Imaging: Promises and Challenges. Top Magn Reson Imaging. 2019 Oct; 28(5):245-254. PMID: 31592991.
    Citations:    Fields:    Translation:Humans
  25. Taquet M, Jankovski A, Rensonnet G, Jacobs D, des Rieux A, Macq B, Warfield SK, Scherrer B. Extra-axonal restricted diffusion as an in-vivo marker of reactive microglia. Sci Rep. 2019 09 25; 9(1):13874. PMID: 31554896.
    Citations:    Fields:    
  26. Miller K, Joldes GR, Bourantas G, Warfield SK, Hyde DE, Kikinis R, Wittek A. Biomechanical modeling and computer simulation of the brain during neurosurgery. Int J Numer Method Biomed Eng. 2019 10; 35(10):e3250. PMID: 31400252.
    Citations:    Fields:    Translation:Humans
  27. Wallace TE, Afacan O, Kober T, Warfield SK. Rapid measurement and correction of spatiotemporal B0 field changes using FID navigators and a multi-channel reference image. Magn Reson Med. 2020 02; 83(2):575-589. PMID: 31463976.
    Citations:    Fields:    
  28. Afacan O, Wallace TE, Warfield SK. Retrospective correction of head motion using measurements from an electromagnetic tracker. Magn Reson Med. 2020 02; 83(2):427-437. PMID: 31400036.
    Citations:    Fields:    
  29. Ortinau CM, Rollins CK, Gholipour A, Yun HJ, Marshall M, Gagoski B, Afacan O, Friedman K, Tworetzky W, Warfield SK, Newburger JW, Inder TE, Grant PE, Im K. Early-Emerging Sulcal Patterns Are Atypical in Fetuses with Congenital Heart Disease. Cereb Cortex. 2019 07 22; 29(8):3605-3616. PMID: 30272144.
    Citations: 3     Fields:    Translation:Humans
  30. Prohl AK, Scherrer B, Tomas-Fernandez X, Filip-Dhima R, Kapur K, Velasco-Annis C, Clancy S, Carmody E, Dean M, Valle M, Prabhu SP, Peters JM, Bebin EM, Krueger DA, Northrup H, Wu JY, Sahin M, Warfield SK. Reproducibility of Structural and Diffusion Tensor Imaging in the TACERN Multi-Center Study. Front Integr Neurosci. 2019; 13:24. PMID: 31417372.
    Citations: 4     
  31. Ahtam B, Dehaes M, Sliva DD, Peters JM, Krueger DA, Bebin EM, Northrup H, Wu JY, Warfield SK, Sahin M, Grant PE. Resting-State fMRI Networks in Children with Tuberous Sclerosis Complex. J Neuroimaging. 2019 11; 29(6):750-759. PMID: 31304656.
    Citations:    Fields:    Translation:Humans
  32. Peters JM, Struyven RR, Prohl AK, Vasung L, Stajduhar A, Taquet M, Bushman JJ, Lidov H, Singh JM, Scherrer B, Madsen JR, Prabhu SP, Sahin M, Afacan O, Warfield SK. White matter mean diffusivity correlates with myelination in tuberous sclerosis complex. Ann Clin Transl Neurol. 2019 07; 6(7):1178-1190. PMID: 31353853.
    Citations: 4     Fields:    Translation:HumansCells
  33. Joldes G, Bourantas G, Zwick B, Chowdhury H, Wittek A, Agrawal S, Mountris K, Hyde D, Warfield SK, Miller K. Suite of meshless algorithms for accurate computation of soft tissue deformation for surgical simulation. Med Image Anal. 2019 08; 56:152-171. PMID: 31229760.
    Citations:    Fields:    Translation:Animals
  34. Sourati J, Gholipour A, Dy JG, Tomas-Fernandez X, Kurugol S, Warfield SK. Intelligent Labeling Based on Fisher Information for Medical Image Segmentation Using Deep Learning. IEEE Trans Med Imaging. 2019 11; 38(11):2642-2653. PMID: 30932833.
    Citations:    Fields:    Translation:Humans
  35. Cole AR, Perry DA, Raza A, Nedder AP, Pollack E, Regan WL, van den Bosch SJ, Polizzotti BD, Yang E, Davila D, Afacan O, Warfield SK, Ou Y, Sefton B, Everett AD, Neil JJ, Lidov HGW, Mayer JE, Kheir JN. Perioperatively Inhaled Hydrogen Gas Diminishes Neurologic Injury Following Experimental Circulatory Arrest in Swine. JACC Basic Transl Sci. 2019 Apr; 4(2):176-187. PMID: 31061920.
    Citations: 2     
  36. Hyde DE, Peters J, Warfield SK. Multi-Resolution Graph Based Volumetric Cortical Basis Functions From Local Anatomic Features. IEEE Trans Biomed Eng. 2019 12; 66(12):3381-3392. PMID: 30872218.
    Citations:    Fields:    Translation:Humans
  37. Waugh JL, Kuster JK, Makhlouf ML, Levenstein JM, Multhaupt-Buell TJ, Warfield SK, Sharma N, Blood AJ. A registration method for improving quantitative assessment in probabilistic diffusion tractography. Neuroimage. 2019 04 01; 189:288-306. PMID: 30611874.
    Citations:    Fields:    Translation:Humans
  38. Hashemi SR, Salehi SSM, Erdogmus D, Prabhu SP, Warfield SK, Gholipour A. Asymmetric Loss Functions and Deep Densely Connected Networks for Highly Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection. IEEE Access. 2019; 7:721-1735. PMID: 31528523.
    Citations: 2     
  39. Marami B, Scherrer B, Khan S, Afacan O, Prabhu SP, Sahin M, Warfield SK, Gholipour A. Motion-robust diffusion compartment imaging using simultaneous multi-slice acquisition. Magn Reson Med. 2019 05; 81(5):3314-3329. PMID: 30443929.
    Citations:    Fields:    Translation:Humans
  40. Lamash Y, Kurugol S, Freiman M, Perez-Rossello JM, Callahan MJ, Bousvaros A, Warfield SK. Curved planar reformatting and convolutional neural network-based segmentation of the small bowel for visualization and quantitative assessment of pediatric Crohn's disease from MRI. J Magn Reson Imaging. 2019 06; 49(6):1565-1576. PMID: 30353957.
    Citations: 1     Fields:    Translation:Humans
  41. Peters JM, Prohl A, Kapur K, Nath A, Scherrer B, Clancy S, Prabhu SP, Sahin M, Franz DN, Warfield SK, Krueger DA. Longitudinal Effects of Everolimus on White Matter Diffusion in Tuberous Sclerosis Complex. Pediatr Neurol. 2019 01; 90:24-30. PMID: 30424962.
    Citations: 5     Fields:    Translation:HumansCTClinical Trials
  42. Baumer FM, Peters JM, Clancy S, Prohl AK, Prabhu SP, Scherrer B, Jansen FE, Braun KPJ, Sahin M, Stamm A, Warfield SK. Corpus Callosum White Matter Diffusivity Reflects Cumulative Neurological Comorbidity in Tuberous Sclerosis Complex. Cereb Cortex. 2018 10 01; 28(10):3665-3672. PMID: 29939236.
    Citations: 9     Fields: