Harvard Catalyst Profiles

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Ali Amiryousefi, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Alijagic A, Scherbak N, Kotlyar O, Karlsson P, Wang X, Odnevall I, Benada O, Amiryousefi A, Andersson L, Persson A, Felth J, Andersson H, Larsson M, Hedbrant A, Salihovic S, Hyötyläinen T, Repsilber D, Särndahl E, Engwall M. A Novel Nanosafety Approach Using Cell Painting, Metabolomics, and Lipidomics Captures the Cellular and Molecular Phenotypes Induced by the Unintentionally Formed Metal-Based (Nano)Particles. Cells. 2023 Jan 11; 12(2). PMID: 36672217; PMCID: PMC9856453.
    Citations:    Fields:    Translation:HumansCells
  2. Amiryousefi A, Williams B, Jafari M, Tang J. The ENDS of assumptions: an online tool for the epistemic non-parametric drug-response scoring. Bioinformatics. 2022 05 26; 38(11):3132-3133. PMID: 35389453; PMCID: PMC9154283.
    Citations:    Fields:    
  3. Zheng S, Poczai P, Hyvönen J, Tang J, Amiryousefi A. Chloroplot: An Online Program for the Versatile Plotting of Organelle Genomes. Front Genet. 2020; 11:576124. PMID: 33101394; PMCID: PMC7545089.
    Citations: 51     
  4. Jafari M, Wang Y, Amiryousefi A, Tang J. Unsupervised Learning and Multipartite Network Models: A Promising Approach for Understanding Traditional Medicine. Front Pharmacol. 2020; 11:1319. PMID: 32982738; PMCID: PMC7479204.
    Citations: 14     
  5. Salojärvi J, Smolander OP, Nieminen K, Rajaraman S, Safronov O, Safdari P, Lamminmäki A, Immanen J, Lan T, Tanskanen J, Rastas P, Amiryousefi A, Jayaprakash B, Kammonen JI, Hagqvist R, Eswaran G, Ahonen VH, Serra JA, Asiegbu FO, de Dios Barajas-Lopez J, Blande D, Blokhina O, Blomster T, Broholm S, Brosché M, Cui F, Dardick C, Ehonen SE, Elomaa P, Escamez S, Fagerstedt KV, Fujii H, Gauthier A, Gollan PJ, Halimaa P, Heino PI, Himanen K, Hollender C, Kangasjärvi S, Kauppinen L, Kelleher CT, Kontunen-Soppela S, Koskinen JP, Kovalchuk A, Kärenlampi SO, Kärkönen AK, Lim KJ, Leppälä J, Macpherson L, Mikola J, Mouhu K, Mähönen AP, Niinemets Ü, Oksanen E, Overmyer K, Palva ET, Pazouki L, Pennanen V, Puhakainen T, Poczai P, Possen BJHM, Punkkinen M, Rahikainen MM, Rousi M, Ruonala R, van der Schoot C, Shapiguzov A, Sierla M, Sipilä TP, Sutela S, Teeri TH, Tervahauta AI, Vaattovaara A, Vahala J, Vetchinnikova L, Welling A, Wrzaczek M, Xu E, Paulin LG, Schulman AH, Lascoux M, Albert VA, Auvinen P, Helariutta Y, Kangasjärvi J. Author Correction: Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch. Nat Genet. 2019 Jul; 51(7):1187-1189. PMID: 31197270; PMCID: PMC8076037.
    Citations: 2     Fields:    
  6. Sablok G, Amiryousefi A, He X, Hyvönen J, Poczai P. Sequencing the Plastid Genome of Giant Ragweed (Ambrosia trifida, Asteraceae) From a Herbarium Specimen. Front Plant Sci. 2019; 10:218. PMID: 30873197; PMCID: PMC6403193.
    Citations: 11     
  7. Smetana O, Mäkilä R, Lyu M, Amiryousefi A, Sánchez Rodríguez F, Wu MF, Solé-Gil A, Leal Gavarrón M, Siligato R, Miyashima S, Roszak P, Blomster T, Reed JW, Broholm S, Mähönen AP. High levels of auxin signalling define the stem-cell organizer of the vascular cambium. Nature. 2019 01; 565(7740):485-489. PMID: 30626967.
    Citations: 57     Fields:    Translation:AnimalsCells
  8. Amiryousefi A, Hyvönen J, Poczai P. IRscope: an online program to visualize the junction sites of chloroplast genomes. Bioinformatics. 2018 09 01; 34(17):3030-3031. PMID: 29659705.
    Citations: 265     Fields:    
  9. Amiryousefi A, Hyvönen J, Poczai P. iMEC: Online Marker Efficiency Calculator. Appl Plant Sci. 2018 Jun; 6(6):e01159. PMID: 30131901; PMCID: PMC6025818.
    Citations: 23     
  10. Amiryousefi A, Hyvönen J, Poczai P. The chloroplast genome sequence of bittersweet (Solanum dulcamara): Plastid genome structure evolution in Solanaceae. PLoS One. 2018; 13(4):e0196069. PMID: 29694416; PMCID: PMC5919006.
    Citations: 39     Fields:    Translation:Animals
  11. Poczai P, Amiryousefi A, Hyvönen J. Complete chloroplast genome sequence of Coyote tobacco (Nicotiana attenuata, Solanaceae). Mitochondrial DNA B Resour. 2017 Nov 06; 2(2):761-762. PMID: 33473973; PMCID: PMC7800028.
    Citations: 1     
  12. Amiryousefi A, Hyvönen J, Poczai P. The plastid genome sequence of the invasive plant common Ragweed (Ambrosia artemisiifolia, Asteraceae). Mitochondrial DNA B Resour. 2017 Oct 18; 2(2):753-754. PMID: 33473969; PMCID: PMC7800964.
    Citations:    
  13. Amiryousefi A, Hyvönen J, Poczai P. The plastid genome of Vanillon (Vanilla pompona, Orchidaceae). Mitochondrial DNA B Resour. 2017 Sep 29; 2(2):689-691. PMID: 33473949; PMCID: PMC7800859.
    Citations: 4     
  14. Salojärvi J, Smolander OP, Nieminen K, Rajaraman S, Safronov O, Safdari P, Lamminmäki A, Immanen J, Lan T, Tanskanen J, Rastas P, Amiryousefi A, Jayaprakash B, Kammonen JI, Hagqvist R, Eswaran G, Ahonen VH, Serra JA, Asiegbu FO, de Dios Barajas-Lopez J, Blande D, Blokhina O, Blomster T, Broholm S, Brosché M, Cui F, Dardick C, Ehonen SE, Elomaa P, Escamez S, Fagerstedt KV, Fujii H, Gauthier A, Gollan PJ, Halimaa P, Heino PI, Himanen K, Hollender C, Kangasjärvi S, Kauppinen L, Kelleher CT, Kontunen-Soppela S, Koskinen JP, Kovalchuk A, Kärenlampi SO, Kärkönen AK, Lim KJ, Leppälä J, Macpherson L, Mikola J, Mouhu K, Mähönen AP, Niinemets Ü, Oksanen E, Overmyer K, Palva ET, Pazouki L, Pennanen V, Puhakainen T, Poczai P, Possen BJHM, Punkkinen M, Rahikainen MM, Rousi M, Ruonala R, van der Schoot C, Shapiguzov A, Sierla M, Sipilä TP, Sutela S, Teeri TH, Tervahauta AI, Vaattovaara A, Vahala J, Vetchinnikova L, Welling A, Wrzaczek M, Xu E, Paulin LG, Schulman AH, Lascoux M, Albert VA, Auvinen P, Helariutta Y, Kangasjärvi J. Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch. Nat Genet. 2017 Jun; 49(6):904-912. PMID: 28481341.
    Citations: 60     Fields:    Translation:Animals
  15. Cui F, Brosché M, Lehtonen MT, Amiryousefi A, Xu E, Punkkinen M, Valkonen JP, Fujii H, Overmyer K. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant. 2016 06 06; 9(6):926-38. PMID: 27060495.
    Citations: 31     Fields:    Translation:Animals
  16. Hovi T, Ollgren J, Haapakoski J, Amiryousefi A, Savolainen-Kopra C. Exposure to persons with symptoms of respiratory or gastrointestinal infection and relative risk of disease: self-reported observations by controls in a randomized intervention trial. Trials. 2015 Apr 17; 16:168. PMID: 25879224; PMCID: PMC4412200.
    Citations: 3     Fields:    Translation:Humans
  17. Savolainen-Kopra C, Korpela T, Simonen-Tikka ML, Amiryousefi A, Ziegler T, Roivainen M, Hovi T. Single treatment with ethanol hand rub is ineffective against human rhinovirus--hand washing with soap and water removes the virus efficiently. J Med Virol. 2012 Mar; 84(3):543-7. PMID: 22246844.
    Citations: 33     Fields:    Translation:HumansCellsPHPublic Health
  18. Savolainen-Kopra C, Haapakoski J, Peltola PA, Ziegler T, Korpela T, Anttila P, Amiryousefi A, Huovinen P, Huvinen M, Noronen H, Riikkala P, Roivainen M, Ruutu P, Teirilä J, Vartiainen E, Hovi T. Hand washing with soap and water together with behavioural recommendations prevents infections in common work environment: an open cluster-randomized trial. Trials. 2012 Jan 16; 13:10. PMID: 22243622; PMCID: PMC3296604.
    Citations: 27     Fields:    Translation:HumansPHPublic Health
  19. Savolainen-Kopra C, Haapakoski J, Peltola PA, Ziegler T, Korpela T, Anttila P, Amiryousefi A, Huovinen P, Huvinen M, Noronen H, Riikkala P, Roivainen M, Ruutu P, Teirilä J, Vartiainen E, Hovi T. STOPFLU: is it possible to reduce the number of days off in office work by improved hand-hygiene? Trials. 2010 Jun 04; 11:69. PMID: 20525328; PMCID: PMC2889989.
    Citations: 8     Fields:    Translation:HumansPHPublic Health
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.