Harvard Catalyst Profiles

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Jacob Nearing, Ph.D.


Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. DeClercq V, Nearing JT, Sweeney E. Plant-Based Diets and Cancer Risk: What is the Evidence? Curr Nutr Rep. 2022 06; 11(2):354-369. PMID: 35334103.
    Citations:    Fields:    Translation:Humans
  2. Nearing JT, Douglas GM, Hayes MG, MacDonald J, Desai DK, Allward N, Jones CMA, Wright RJ, Dhanani AS, Comeau AM, Langille MGI. Author Correction: Microbiome differential abundance methods produce different results across 38 datasets. Nat Commun. 2022 Feb 03; 13(1):777. PMID: 35115546; PMCID: PMC8813933.
    Citations:    Fields:    
  3. Nearing JT, Douglas GM, Hayes MG, MacDonald J, Desai DK, Allward N, Jones CMA, Wright RJ, Dhanani AS, Comeau AM, Langille MGI. Microbiome differential abundance methods produce different results across 38 datasets. Nat Commun. 2022 01 17; 13(1):342. PMID: 35039521; PMCID: PMC8763921.
    Citations: 71     Fields:    Translation:Humans
  4. DeClercq V, Nearing JT, Langille MGI. Investigation of the impact of commonly used medications on the oral microbiome of individuals living without major chronic conditions. PLoS One. 2021; 16(12):e0261032. PMID: 34882708; PMCID: PMC8659300.
    Citations: 2     Fields:    Translation:HumansCells
  5. Nearing JT, Comeau AM, Langille MGI. Identifying biases and their potential solutions in human microbiome studies. Microbiome. 2021 05 18; 9(1):113. PMID: 34006335; PMCID: PMC8132403.
    Citations: 16     Fields:    Translation:Humans
  6. Sultan M, Nearing JT, Brown JM, Huynh TT, Cruickshank BM, Lamoureaux E, Vidovic D, Dahn ML, Fernando W, Coyle KM, Giacomantonio CA, Langille MGI, Marcato P. An in vivo genome-wide shRNA screen identifies BCL6 as a targetable biomarker of paclitaxel resistance in breast cancer. Mol Oncol. 2021 08; 15(8):2046-2064. PMID: 33932086; PMCID: PMC8333778.
    Citations: 3     Fields:    Translation:HumansCells
  7. Zhang J, Cook J, Nearing JT, Zhang J, Raudonis R, Glick BR, Langille MGI, Cheng Z. Harnessing the plant microbiome to promote the growth of agricultural crops. Microbiol Res. 2021 Apr; 245:126690. PMID: 33460987.
    Citations: 17     Fields:    Translation:HumansAnimalsCellsPHPublic Health
  8. Dunn KA, Connors J, Bielawski JP, Nearing JT, Langille MGI, Van Limbergen J, Fernandez CV, MacDonald T, Kulkarni K. Investigating the gut microbial community and genes in children with differing levels of change in serum asparaginase activity during pegaspargase treatment for acute lymphoblastic leukemia. Leuk Lymphoma. 2021 04; 62(4):927-936. PMID: 33258724.
    Citations: 2     Fields:    Translation:Humans
  9. Nearing JT, DeClercq V, Van Limbergen J, Langille MGI. Assessing the Variation within the Oral Microbiome of Healthy Adults. mSphere. 2020 09 30; 5(5). PMID: 32999079; PMCID: PMC7529435.
    Citations: 22     Fields:    Translation:HumansCells
  10. Yurgel SN, Nearing JT, Douglas GM, Langille MGI. Metagenomic Functional Shifts to Plant Induced Environmental Changes. Front Microbiol. 2019; 10:1682. PMID: 31404278; PMCID: PMC6676915.
    Citations: 6     
  11. Nearing JT, Connors J, Whitehouse S, Van Limbergen J, Macdonald T, Kulkarni K, Langille MGI. Infectious Complications Are Associated With Alterations in the Gut Microbiome in Pediatric Patients With Acute Lymphoblastic Leukemia. Front Cell Infect Microbiol. 2019; 9:28. PMID: 30838178; PMCID: PMC6389711.
    Citations: 19     Fields:    Translation:Humans
  12. Nearing JT, Douglas GM, Comeau AM, Langille MGI. Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches. PeerJ. 2018; 6:e5364. PMID: 30123705; PMCID: PMC6087418.
    Citations: 100     
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.