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Omer Hidir Yilmaz, Ph.D., M.D.

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The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. R01CA257523 (CHAN, ANDREW T) Apr 5, 2021 - Mar 31, 2026
    Effects of inflammaging on intestinal epithelial cells and aspirin chemoprevention.
    Role: Co-Principal Investigator
  2. R01CA245314 (YILMAZ, OMER) Sep 1, 2020 - May 31, 2025
    Impact of fasting on intestinal stem cells and cancer
    Role: Principal Investigator
  3. U01CA250554 (LU, TIMOTHY) Jul 8, 2020 - Jun 30, 2023
    Developing high-throughput genetic perturbation strategies for single cells in cancer organoids
    Role: Co-Principal Investigator
  4. R01DK126545 (KWON, DOUGLAS) Jul 1, 2020 - Jun 30, 2025
    Mechanisms of HIV-associated epithelial intestinal stem cell (ISC) dysfunction
    Role: Co-Principal Investigator
  5. R01CA211184 (YILMAZ, OMER) Dec 23, 2016 - Nov 30, 2021
    Dietary control of stem cells in physiology and cancer
    Role: Principal Investigator

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Neyaz A, Odze RD, Rickelt S, Nieman LT, Bledsoe JR, Mahadevan KK, Arora K, Jeck WR, Taylor MS, Gala M, Patil DT, Yilmaz OH, Rivera MN, Ting DT, Deshpande V. LGR5 in Barrett's Esophagus and its Utility in Predicting Patients at Increased Risk of Advanced Neoplasia. Clin Transl Gastroenterol. 2020 Dec 22; 12(1):e00272. PMID: 33464729.
    Citations:    Fields:    
  2. Rickelt S, Condon C, Mana M, Whittaker C, Pfirschke C, Roper J, Patil DT, Brown I, Mattia AR, Zukerberg L, Zhao Q, Chetty R, Lauwers GY, Neyaz A, Leijssen LGJ, Boylan K, Yilmaz OH, Deshpande V, Hynes RO. Agrin in the Muscularis Mucosa Serves as a Biomarker Distinguishing Hyperplastic Polyps from Sessile Serrated Lesions. Clin Cancer Res. 2020 03 15; 26(6):1277-1287. PMID: 31852835.
    Citations: 2     Fields:    Translation:Humans
  3. Brackett DG, Neyaz A, Arora K, Masia R, Mattia A, Zukerberg L, Misdraji J, Goyal L, Zhu AX, Ferrone CR, Yilmaz OH, Deshpande V. Cholangiolar pattern and albumin in situ hybridisation enable a diagnosis of intrahepatic cholangiocarcinoma. J Clin Pathol. 2020 Jan; 73(1):23-29. PMID: 31422372.
    Citations: 1     Fields:    Translation:HumansCells
  4. Biton M, Haber AL, Rogel N, Burgin G, Beyaz S, Schnell A, Ashenberg O, Su CW, Smillie C, Shekhar K, Chen Z, Wu C, Ordovas-Montanes J, Alvarez D, Herbst RH, Zhang M, Tirosh I, Dionne D, Nguyen LT, Xifaras ME, Shalek AK, von Andrian UH, Graham DB, Rozenblatt-Rosen O, Shi HN, Kuchroo V, Yilmaz OH, Regev A, Xavier RJ. T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation. Cell. 2018 11 15; 175(5):1307-1320.e22. PMID: 30392957.
    Citations: 76     Fields:    Translation:AnimalsCells
  5. Haber AL, Biton M, Rogel N, Herbst RH, Shekhar K, Smillie C, Burgin G, Delorey TM, Howitt MR, Katz Y, Tirosh I, Beyaz S, Dionne D, Zhang M, Raychowdhury R, Garrett WS, Rozenblatt-Rosen O, Shi HN, Yilmaz O, Xavier RJ, Regev A. A single-cell survey of the small intestinal epithelium. Nature. 2017 11 16; 551(7680):333-339. PMID: 29144463.
    Citations: 260     Fields:    Translation:AnimalsCells
  6. Kedrin D, Gandhi SC, Wolf M, Roper J, Yilmaz O, Corey K, Khalili H, Stanford FC, Gala M. Bariatric Surgery Prior to Index Screening Colonoscopy Is Associated With a Decreased Rate of Colorectal Adenomas in Obese Individuals. Clin Transl Gastroenterol. 2017 Feb 09; 8(2):e73. PMID: 28181993.
    Citations: 2     Fields:    
  7. Strijbis K, Yilmaz OH, Dougan SK, Esteban A, Gröne A, Kumamoto CA, Ploegh HL. Intestinal colonization by Candida albicans alters inflammatory responses in Bruton's tyrosine kinase-deficient mice. PLoS One. 2014; 9(11):e112472. PMID: 25379804.
    Citations: 4     Fields:    Translation:HumansAnimalsCells
  8. Lamming DW, Mihaylova MM, Katajisto P, Baar EL, Yilmaz OH, Hutchins A, Gultekin Y, Gaither R, Sabatini DM. Depletion of Rictor, an essential protein component of mTORC2, decreases male lifespan. Aging Cell. 2014 Oct; 13(5):911-7. PMID: 25059582.
    Citations: 42     Fields:    Translation:AnimalsCells
  9. Lassen KG, Kuballa P, Conway KL, Patel KK, Becker CE, Peloquin JM, Villablanca EJ, Norman JM, Liu TC, Heath RJ, Becker ML, Fagbami L, Horn H, Mercer J, Yilmaz OH, Jaffe JD, Shamji AF, Bhan AK, Carr SA, Daly MJ, Virgin HW, Schreiber SL, Stappenbeck TS, Xavier RJ. Atg16L1 T300A variant decreases selective autophagy resulting in altered cytokine signaling and decreased antibacterial defense. Proc Natl Acad Sci U S A. 2014 May 27; 111(21):7741-6. PMID: 24821797.
    Citations: 121     Fields:    Translation:AnimalsCells
  10. Chudnovsky Y, Kim D, Zheng S, Whyte WA, Bansal M, Bray MA, Gopal S, Theisen MA, Bilodeau S, Thiru P, Muffat J, Yilmaz OH, Mitalipova M, Woolard K, Lee J, Nishimura R, Sakata N, Fine HA, Carpenter AE, Silver SJ, Verhaak RG, Califano A, Young RA, Ligon KL, Mellinghoff IK, Root DE, Sabatini DM, Hahn WC, Chheda MG. ZFHX4 interacts with the NuRD core member CHD4 and regulates the glioblastoma tumor-initiating cell state. Cell Rep. 2014 Jan 30; 6(2):313-24. PMID: 24440720.
    Citations: 50     Fields:    Translation:HumansAnimalsCells
  11. Gupta NK, Yilmaz O, Fisher M, Yajnik V. Abatacept: a new treatment option for refractory adult autoimmune enteropathy. J Clin Gastroenterol. 2014 Jan; 48(1):55-8. PMID: 24045285.
    Citations: 4     Fields:    Translation:HumansCells
  12. Conway KL, Kuballa P, Song JH, Patel KK, Castoreno AB, Yilmaz OH, Jijon HB, Zhang M, Aldrich LN, Villablanca EJ, Peloquin JM, Goel G, Lee IA, Mizoguchi E, Shi HN, Bhan AK, Shaw SY, Schreiber SL, Virgin HW, Shamji AF, Stappenbeck TS, Reinecker HC, Xavier RJ. Atg16l1 is required for autophagy in intestinal epithelial cells and protection of mice from Salmonella infection. Gastroenterology. 2013 Dec; 145(6):1347-57. PMID: 23973919.
    Citations: 98     Fields:    Translation:HumansAnimalsCells
  13. Arnason T, Pino MS, Yilmaz O, Kirley SD, Rueda BR, Chung DC, Zukerberg LR. Cables1 is a tumor suppressor gene that regulates intestinal tumor progression in Apc(Min) mice. . 2013 Jul; 14(7):672-8. PMID: 23792637.
    Citations: 10     Translation:HumansAnimalsCells
  14. Curry NL, Mino-Kenudson M, Oliver TG, Yilmaz OH, Yilmaz VO, Moon JY, Jacks T, Sabatini DM, Kalaany NY. Pten-null tumors cohabiting the same lung display differential AKT activation and sensitivity to dietary restriction. Cancer Discov. 2013 Aug; 3(8):908-21. PMID: 23719831.
    Citations: 16     Fields:    Translation:HumansAnimalsCells
  15. Tse JY, Wu S, Shinagare SA, Lauwers GY, Yilmaz O, Wu CL, Deshpande V. Peutz-Jeghers syndrome: a critical look at colonic Peutz-Jeghers polyps. Mod Pathol. 2013 Sep; 26(9):1235-40. PMID: 23599156.
    Citations: 6     Fields:    Translation:Humans
  16. Birsoy K, Wang T, Possemato R, Yilmaz OH, Koch CE, Chen WW, Hutchins AW, Gultekin Y, Peterson TR, Carette JE, Brummelkamp TR, Clish CB, Sabatini DM. MCT1-mediated transport of a toxic molecule is an effective strategy for targeting glycolytic tumors. Nat Genet. 2013 Jan; 45(1):104-8. PMID: 23202129.
    Citations: 86     Fields:    Translation:HumansAnimalsCells
  17. Yilmaz OH, Deshpande V. Pathology and Genetics of Pancreatic Neoplasms. Surg Pathol Clin. 2012 Dec; 5(4):941-59. PMID: 26838509.
    Citations:    Fields:    
  18. Wang H, Chen Y, Fernandez-Del Castillo C, Yilmaz O, Deshpande V. Heterogeneity in signaling pathways of gastroenteropancreatic neuroendocrine tumors: a critical look at notch signaling pathway. Mod Pathol. 2013 Jan; 26(1):139-47. PMID: 22918166.
    Citations: 16     Fields:    Translation:HumansCells
  19. Kelly PJ, Shinagare S, Sainani N, Hong X, Ferrone C, Yilmaz O, Fernández-del Castillo C, Lauwers GY, Deshpande V. Cystic papillary pattern in pancreatic ductal adenocarcinoma: a heretofore undescribed morphologic pattern that mimics intraductal papillary mucinous carcinoma. Am J Surg Pathol. 2012 May; 36(5):696-701. PMID: 22367300.
    Citations: 3     Fields:    Translation:Humans
  20. Lee JY, Nakada D, Yilmaz OH, Tothova Z, Joseph NM, Lim MS, Gilliland DG, Morrison SJ. mTOR activation induces tumor suppressors that inhibit leukemogenesis and deplete hematopoietic stem cells after Pten deletion. Cell Stem Cell. 2010 Nov 05; 7(5):593-605. PMID: 21040901.
    Citations: 99     Fields:    Translation:AnimalsCells
  21. Oravecz-Wilson KI, Philips ST, Yilmaz OH, Ames HM, Li L, Crawford BD, Gauvin AM, Lucas PC, Sitwala K, Downing JR, Morrison SJ, Ross TS. Persistence of leukemia-initiating cells in a conditional knockin model of an imatinib-responsive myeloproliferative disorder. Cancer Cell. 2009 Aug 04; 16(2):137-48. PMID: 19647224.
    Citations: 34     Fields:    Translation:HumansAnimalsCells
  22. Levi BP, Yilmaz OH, Duester G, Morrison SJ. Aldehyde dehydrogenase 1a1 is dispensable for stem cell function in the mouse hematopoietic and nervous systems. Blood. 2009 Feb 19; 113(8):1670-80. PMID: 18971422.
    Citations: 39     Fields:    Translation:AnimalsCells
  23. Eser I, Kapran Z, Altan T, Ozel Karatas M, Aydin D, Okaygun E, Yilmaz OF. Isolates and antibiotic sensitivity of eighty culture-proven endophthalmitis cases from Istanbul. Ophthalmologica. 2008; 222(3):157-60. PMID: 18497523.
    Citations: 4     Fields:    Translation:HumansAnimalsCells
  24. Kiel MJ, Yilmaz OH, Morrison SJ. CD150- cells are transiently reconstituting multipotent progenitors with little or no stem cell activity. Blood. 2008 Apr 15; 111(8):4413-4; author reply 4414-5. PMID: 18398056.
    Citations: 29     Fields:    Translation:AnimalsCells
  25. Yilmaz OH, Morrison SJ. The PI-3kinase pathway in hematopoietic stem cells and leukemia-initiating cells: a mechanistic difference between normal and cancer stem cells. Blood Cells Mol Dis. 2008 Jul-Aug; 41(1):73-6. PMID: 18387833.
    Citations: 13     Fields:    Translation:AnimalsCells
  26. Yilmaz OH, Valdez R, Theisen BK, Guo W, Ferguson DO, Wu H, Morrison SJ. Pten dependence distinguishes haematopoietic stem cells from leukaemia-initiating cells. Nature. 2006 May 25; 441(7092):475-82. PMID: 16598206.
    Citations: 553     Fields:    Translation:AnimalsCells
  27. Kim I, He S, Yilmaz OH, Kiel MJ, Morrison SJ. Enhanced purification of fetal liver hematopoietic stem cells using SLAM family receptors. Blood. 2006 Jul 15; 108(2):737-44. PMID: 16569764.
    Citations: 90     Fields:    Translation:AnimalsCells
  28. Yilmaz OH, Kiel MJ, Morrison SJ. SLAM family markers are conserved among hematopoietic stem cells from old and reconstituted mice and markedly increase their purity. Blood. 2006 Feb 01; 107(3):924-30. PMID: 16219798.
    Citations: 107     Fields:    Translation:AnimalsCells
  29. Kiel MJ, Yilmaz OH, Iwashita T, Yilmaz OH, Terhorst C, Morrison SJ. SLAM family receptors distinguish hematopoietic stem and progenitor cells and reveal endothelial niches for stem cells. Cell. 2005 Jul 01; 121(7):1109-21. PMID: 15989959.
    Citations: 1221     Fields:    Translation:AnimalsCells
  30. Kiel MJ, Iwashita T, Yilmaz OH, Morrison SJ. Spatial differences in hematopoiesis but not in stem cells indicate a lack of regional patterning in definitive hematopoietic stem cells. Dev Biol. 2005 Jul 01; 283(1):29-39. PMID: 15913595.
    Citations: 23     Fields:    Translation:AnimalsCells
  31. Kim I, Yilmaz OH, Morrison SJ. CD144 (VE-cadherin) is transiently expressed by fetal liver hematopoietic stem cells. Blood. 2005 Aug 01; 106(3):903-5. PMID: 15831702.
    Citations: 37     Fields:    Translation:AnimalsCells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.