Harvard Catalyst Profiles

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Manoj Kumar Kanakasabapathy, M.Sc.(Tech)


Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Cherouveim P, Jiang VS, Kanakasabapathy MK, Thirumalaraju P, Souter I, Dimitriadis I, Bormann CL, Shafiee H. Quality assurance (QA) for monitoring the performance of assisted reproductive technology (ART) staff using artificial intelligence (AI). J Assist Reprod Genet. 2022 Nov 14. PMID: 36374394.
    Citations:    Fields:    
  2. Chen H, Kim S, Hardie JM, Thirumalaraju P, Gharpure S, Rostamian S, Udayakumar S, Lei Q, Cho G, Kanakasabapathy MK, Shafiee H. Deep learning-assisted sensitive detection of fentanyl using a bubbling-microchip. Lab Chip. 2022 Nov 04. PMID: 36331061.
    Citations:    Fields:    
  3. Suárez-Trujillo A, Kandula H, Kumar J, Devi A, Shirley L, Thirumalaraju P, Kanakasabapathy MK, Shafiee H, Hart L. Validation of a smartphone-based device to measure concentration, motility, and morphology in swine ejaculates. Transl Anim Sci. 2022 Oct; 6(4):txac119. PMID: 36263416; PMCID: PMC9558898.
  4. Hammer KC, Jiang VS, Kanakasabapathy MK, Thirumalaraju P, Kandula H, Dimitriadis I, Souter I, Bormann CL, Shafiee H. Using artificial intelligence to avoid human error in identifying embryos: a retrospective cohort study. J Assist Reprod Genet. 2022 Oct; 39(10):2343-2348. PMID: 35962845; PMCID: PMC9596636.
    Citations:    Fields:    
  5. Silva FSR, Erdogmus E, Shokr A, Kandula H, Thirumalaraju P, Kanakasabapathy MK, Hardie JM, Pacheco LGC, Li JZ, Kuritzkes DR, Shafiee H. SARS-CoV-2 RNA Detection by a Cellphone-Based Amplification-Free System with CRISPR/CAS-Dependent Enzymatic (CASCADE) Assay. Adv Mater Technol. 2021 Dec; 6(12):2100602. PMID: 34514084; PMCID: PMC8420437.
    Citations: 6     
  6. Bormann CL, Curchoe CL, Thirumalaraju P, Kanakasabapathy MK, Gupta R, Pooniwala R, Kandula H, Souter I, Dimitriadis I, Shafiee H. Correction to: Deep learning early warning system for embryo culture conditions and embryologist performance in the ART laboratory. J Assist Reprod Genet. 2021 Jul; 38(7):1893. PMID: 33990900.
    Citations:    Fields:    
  7. Kanakasabapathy MK, Thirumalaraju P, Kandula H, Doshi F, Sivakumar AD, Kartik D, Gupta R, Pooniwala R, Branda JA, Tsibris AM, Kuritzkes DR, Petrozza JC, Bormann CL, Shafiee H. Adaptive adversarial neural networks for the analysis of lossy and domain-shifted datasets of medical images. Nat Biomed Eng. 2021 06; 5(6):571-585. PMID: 34112997; PMCID: PMC8943917.
    Citations: 3     Fields:    Translation:HumansAnimalsCells
  8. Bormann CL, Curchoe CL, Thirumalaraju P, Kanakasabapathy MK, Gupta R, Pooniwala R, Kandula H, Souter I, Dimitriadis I, Shafiee H. Deep learning early warning system for embryo culture conditions and embryologist performance in the ART laboratory. J Assist Reprod Genet. 2021 Jul; 38(7):1641-1646. PMID: 33904010; PMCID: PMC8324654.
    Citations: 2     Fields:    Translation:Humans
  9. Thirumalaraju P, Kanakasabapathy MK, Bormann CL, Gupta R, Pooniwala R, Kandula H, Souter I, Dimitriadis I, Shafiee H. Evaluation of deep convolutional neural networks in classifying human embryo images based on their morphological quality. Heliyon. 2021 Feb; 7(2):e06298. PMID: 33665450.
    Citations: 4     
  10. Draz MS, Vasan A, Muthupandian A, Kanakasabapathy MK, Thirumalaraju P, Sreeram A, Krishnakumar S, Yogesh V, Lin W, Yu XG, Chung RT, Shafiee H. Virus detection using nanoparticles and deep neural network-enabled smartphone system. Sci Adv. 2020 12; 6(51). PMID: 33328239; PMCID: PMC7744080.
    Citations: 6     Fields:    
  11. Shokr A, Pacheco LGC, Thirumalaraju P, Kanakasabapathy MK, Gandhi J, Kartik D, Silva FSR, Erdogmus E, Kandula H, Luo S, Yu XG, Chung RT, Li JZ, Kuritzkes DR, Shafiee H. Mobile Health (mHealth) Viral Diagnostics Enabled with Adaptive Adversarial Learning. ACS Nano. 2021 01 26; 15(1):665-673. PMID: 33226787; PMCID: PMC8299938.
    Citations: 4     Fields:    Translation:HumansPHPublic Health
  12. Bormann CL, Kanakasabapathy MK, Thirumalaraju P, Gupta R, Pooniwala R, Kandula H, Hariton E, Souter I, Dimitriadis I, Ramirez LB, Curchoe CL, Swain J, Boehnlein LM, Shafiee H. Performance of a deep learning based neural network in the selection of human blastocysts for implantation. Elife. 2020 09 15; 9. PMID: 32930094.
    Citations: 16     Fields:    Translation:Humans
  13. Bormann CL, Thirumalaraju P, Kanakasabapathy MK, Kandula H, Souter I, Dimitriadis I, Gupta R, Pooniwala R, Shafiee H. Consistency and objectivity of automated embryo assessments using deep neural networks. Fertil Steril. 2020 04; 113(4):781-787.e1. PMID: 32228880.
    Citations: 14     Fields:    Translation:Humans
  14. Kanakasabapathy MK, Thirumalaraju P, Bormann CL, Kandula H, Dimitriadis I, Souter I, Yogesh V, Kota Sai Pavan S, Yarravarapu D, Gupta R, Pooniwala R, Shafiee H. Development and evaluation of inexpensive automated deep learning-based imaging systems for embryology. Lab Chip. 2019 12 21; 19(24):4139-4145. PMID: 31755505.
    Citations: 9     Fields:    Translation:Humans
  15. Dimitriadis I, L Bormann C, Kanakasabapathy MK, Thirumalaraju P, Kandula H, Yogesh V, Gudipati N, Natarajan V, C Petrozza J, Shafiee H. Automated smartphone-based system for measuring sperm viability, DNA fragmentation, and hyaluronic binding assay score. PLoS One. 2019; 14(3):e0212562. PMID: 30865652.
    Citations: 4     Fields:    Translation:Humans
  16. Potluri V, Kathiresan PS, Kandula H, Thirumalaraju P, Kanakasabapathy MK, Kota Sai Pavan S, Yarravarapu D, Soundararajan A, Baskar K, Gupta R, Gudipati N, C Petrozza J, Shafiee H. An inexpensive smartphone-based device for point-of-care ovulation testing. Lab Chip. 2018 12 18; 19(1):59-67. PMID: 30534677.
    Citations: 6     Fields:    Translation:Humans
  17. Draz MS, Kochehbyoki KM, Vasan A, Battalapalli D, Sreeram A, Kanakasabapathy MK, Kallakuri S, Tsibris A, Kuritzkes DR, Shafiee H. DNA engineered micromotors powered by metal nanoparticles for motion based cellphone diagnostics. Nat Commun. 2018 10 16; 9(1):4282. PMID: 30327456.
    Citations: 16     Fields:    Translation:HumansCells
  18. Draz MS, Lakshminaraasimulu NK, Krishnakumar S, Battalapalli D, Vasan A, Kanakasabapathy MK, Sreeram A, Kallakuri S, Thirumalaraju P, Li Y, Hua S, Yu XG, Kuritzkes DR, Shafiee H. Motion-Based Immunological Detection of Zika Virus Using Pt-Nanomotors and a Cellphone. ACS Nano. 2018 06 26; 12(6):5709-5718. PMID: 29767504; PMCID: PMC6860978.
    Citations: 14     Fields:    Translation:HumansCells
  19. Draz MS, Moazeni M, Venkataramani M, Lakshminarayanan H, Saygili E, Lakshminaraasimulu NK, Kochehbyoki KM, Kanakasabapathy MK, Shabahang S, Vasan A, Bijarchi MA, Memic A, Shafiee H. Hybrid Paper-Plastic Microchip for Flexible and High-Performance Point-of-Care Diagnostics. Adv Funct Mater. 2018 Jun 27; 28(26). PMID: 30416415; PMCID: PMC6223320.
    Citations: 8     
  20. Kanakasabapathy MK, Pandya HJ, Draz MS, Chug MK, Sadasivam M, Kumar S, Etemad B, Yogesh V, Safavieh M, Asghar W, Li JZ, Tsibris AM, Kuritzkes DR, Shafiee H. Rapid, label-free CD4 testing using a smartphone compatible device. Lab Chip. 2017 08 22; 17(17):2910-2919. PMID: 28702612.
    Citations: 24     Fields:    Translation:Humans
  21. Safavieh M, Pandya HJ, Venkataraman M, Thirumalaraju P, Kanakasabapathy MK, Singh A, Prabhakar D, Chug MK, Shafiee H. Rapid Real-Time Antimicrobial Susceptibility Testing with Electrical Sensing on Plastic Microchips with Printed Electrodes. ACS Appl Mater Interfaces. 2017 Apr 12; 9(14):12832-12840. PMID: 28291334.
    Citations: 11     Fields:    
  22. Kanakasabapathy MK, Sadasivam M, Singh A, Preston C, Thirumalaraju P, Venkataraman M, Bormann CL, Draz MS, Petrozza JC, Shafiee H. An automated smartphone-based diagnostic assay for point-of-care semen analysis. Sci Transl Med. 2017 03 22; 9(382). PMID: 28330865.
    Citations: 41     Fields:    Translation:Humans
  23. Safavieh M, Kaul V, Khetani S, Singh A, Dhingra K, Kanakasabapathy MK, Draz MS, Memic A, Kuritzkes DR, Shafiee H. Paper microchip with a graphene-modified silver nano-composite electrode for electrical sensing of microbial pathogens. Nanoscale. 2017 Feb 02; 9(5):1852-1861. PMID: 27845796.
    Citations: 16     Fields:    Translation:Cells
  24. Pandya HJ, Kanakasabapathy MK, Verma S, Chug MK, Memic A, Gadjeva M, Shafiee H. Label-free electrical sensing of bacteria in eye wash samples: A step towards point-of-care detection of pathogens in patients with infectious keratitis. Biosens Bioelectron. 2017 May 15; 91:32-39. PMID: 27987408; PMCID: PMC5323318.
    Citations: 5     Fields:    Translation:HumansAnimalsCells
  25. Safavieh M, Khetani S, Juillard F, Kaul V, Kanakasabapathy MK, Kaye KM, Shafiee H. Electrical response of a B lymphoma cell line latently infected with Kaposi's sarcoma herpesvirus. Biosens Bioelectron. 2016 Jun 15; 80:230-236. PMID: 26851580.
    Citations: 2     Fields:    Translation:HumansCells
  26. Safavieh M, Kanakasabapathy MK, Tarlan F, Ahmed MU, Zourob M, Asghar W, Shafiee H. Emerging Loop-Mediated Isothermal Amplification-Based Microchip and Microdevice Technologies for Nucleic Acid Detection. ACS Biomater Sci Eng. 2016 Mar 14; 2(3):278-294. PMID: 28503658; PMCID: PMC5425166.
    Citations: 42     Fields:    
  27. Shafiee H, Kanakasabapathy MK, Juillard F, Keser M, Sadasivam M, Yuksekkaya M, Hanhauser E, Henrich TJ, Kuritzkes DR, Kaye KM, Demirci U. Printed Flexible Plastic Microchip for Viral Load Measurement through Quantitative Detection of Viruses in Plasma and Saliva. Sci Rep. 2015 Jun 05; 5:9919. PMID: 26046668.
    Citations: 15     Fields:    Translation:HumansCells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.