Harvard Catalyst Profiles

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Erica Ashton Kayleigh DePasquale, Ph.D.


Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Ainciburu M, Morgan DM, DePasquale EAK, Love JC, Prósper F, van Galen P. WAT3R: recovery of T-cell receptor variable regions from 3' single-cell RNA-sequencing. Bioinformatics. 2022 07 11; 38(14):3645-3647. PMID: 35674381; PMCID: PMC9272805.
    Citations:    Fields:    
  2. DePasquale EAK, van Galen P. Plasticity and immune evasion in childhood ALL. Blood. 2022 04 07; 139(14):2096-2097. PMID: 35389444.
    Citations:    Fields:    Translation:Humans
  3. DePasquale EAK, Ssozi D, Ainciburu M, Good J, Noel J, Villanueva MA, Couturier CP, Shalek AK, Aranki SF, Mallidi HR, Griffin GK, Lane AA, van Galen P. Single-Cell Multiomics Reveals Clonal T-Cell Expansions and Exhaustion in Blastic Plasmacytoid Dendritic Cell Neoplasm. Front Immunol. 2022; 13:809414. PMID: 35359938; PMCID: PMC8960171.
    Citations: 1     Fields:    Translation:HumansCells
  4. Miller TE, Lareau CA, Verga JA, DePasquale EAK, Liu V, Ssozi D, Sandor K, Yin Y, Ludwig LS, El Farran CA, Morgan DM, Satpathy AT, Griffin GK, Lane AA, Love JC, Bernstein BE, Sankaran VG, van Galen P. Mitochondrial variant enrichment from high-throughput single-cell RNA sequencing resolves clonal populations. Nat Biotechnol. 2022 07; 40(7):1030-1034. PMID: 35210612; PMCID: PMC9288977.
    Citations: 4     Fields:    Translation:HumansCells
  5. DePasquale EAK, Alganem K, Bentea E, Nawreen N, McGuire JL, Tomar T, Naji F, Hilhorst R, Meller J, McCullumsmith RE. KRSA: An R package and R Shiny web application for an end-to-end upstream kinase analysis of kinome array data. PLoS One. 2021; 16(12):e0260440. PMID: 34919543; PMCID: PMC8682895.
    Citations:    Fields:    Translation:HumansCells
  6. Wu X, Shukla R, Alganem K, Zhang X, Eby HM, Devine EA, Depasquale E, Reigle J, Simmons M, Hahn MK, Au-Yeung C, Asgariroozbehani R, Hahn CG, Haroutunian V, Meller J, Meador-Woodruff J, McCullumsmith RE. Transcriptional profile of pyramidal neurons in chronic schizophrenia reveals lamina-specific dysfunction of neuronal immunity. Mol Psychiatry. 2021 12; 26(12):7699-7708. PMID: 34272489; PMCID: PMC8761210.
    Citations:    Fields:    Translation:HumansCells
  7. DePasquale EAK, Schnell D, Chetal K, Salomonis N. Protocol for Identification and Removal of Doublets with DoubletDecon. STAR Protoc. 2020 09 18; 1(2):100085. PMID: 33111118; PMCID: PMC7580240.
    Citations: 4     Fields:    
  8. Bentea E, Villers A, Moore C, Funk AJ, O'Donovan SM, Verbruggen L, Lara O, Janssen P, De Pauw L, Declerck NB, DePasquale EAK, Churchill MJ, Sato H, Hermans E, Arckens L, Meshul CK, Ris L, McCullumsmith RE, Massie A. Corticostriatal dysfunction and social interaction deficits in mice lacking the cystine/glutamate antiporter. Mol Psychiatry. 2021 09; 26(9):4754-4769. PMID: 32366950; PMCID: PMC7609546.
    Citations: 9     Fields:    Translation:Animals
  9. DePasquale EAK, Schnell D, Dexheimer P, Ferchen K, Hay S, Chetal K, Valiente-Alandí Í, Blaxall BC, Grimes HL, Salomonis N. cellHarmony: cell-level matching and holistic comparison of single-cell transcriptomes. Nucleic Acids Res. 2019 12 02; 47(21):e138. PMID: 31529053.
    Citations: 24     Fields:    Translation:HumansCells
  10. DePasquale EAK, Schnell DJ, Van Camp PJ, Valiente-Alandí Í, Blaxall BC, Grimes HL, Singh H, Salomonis N. DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data. Cell Rep. 2019 11 05; 29(6):1718-1727.e8. PMID: 31693907.
    Citations: 60     Fields:    Translation:HumansAnimalsCells
  11. Bentea E, Depasquale EAK, O'Donovan SM, Sullivan CR, Simmons M, Meador-Woodruff JH, Zhou Y, Xu C, Bai B, Peng J, Song H, Ming GL, Meller J, Wen Z, McCullumsmith RE. Kinase network dysregulation in a human induced pluripotent stem cell model of DISC1 schizophrenia. Mol Omics. 2019 06 10; 15(3):173-188. PMID: 31106784; PMCID: PMC6563817.
    Citations: 14     Fields:    Translation:HumansCells
  12. Sullivan CR, Mielnik CA, O'Donovan SM, Funk AJ, Bentea E, DePasquale EA, Alganem K, Wen Z, Haroutunian V, Katsel P, Ramsey AJ, Meller J, McCullumsmith RE. Connectivity Analyses of Bioenergetic Changes in Schizophrenia: Identification of Novel Treatments. Mol Neurobiol. 2019 Jun; 56(6):4492-4517. PMID: 30338483.
    Citations: 15     Fields:    Translation:HumansAnimalsCells
  13. McGuire JL, DePasquale EAK, Watanabe M, Anwar F, Ngwenya LB, Atluri G, Romick-Rosendale LE, McCullumsmith RE, Evanson NK. Chronic Dysregulation of Cortical and Subcortical Metabolism After Experimental Traumatic Brain Injury. Mol Neurobiol. 2019 Apr; 56(4):2908-2921. PMID: 30069831.
    Citations: 6     Fields:    Translation:Animals
  14. McGuire JL, Depasquale EA, Funk AJ, O'Donnovan SM, Hasselfeld K, Marwaha S, Hammond JH, Hartounian V, Meador-Woodruff JH, Meller J, McCullumsmith RE. Abnormalities of signal transduction networks in chronic schizophrenia. NPJ Schizophr. 2017 Sep 12; 3(1):30. PMID: 28900113; PMCID: PMC5595970.
    Citations: 28     
  15. Dorsett CR, McGuire JL, Niedzielko TL, DePasquale EA, Meller J, Floyd CL, McCullumsmith RE. Traumatic Brain Injury Induces Alterations in Cortical Glutamate Uptake without a Reduction in Glutamate Transporter-1 Protein Expression. J Neurotrauma. 2017 01 01; 34(1):220-234. PMID: 27312729; PMCID: PMC5198172.
    Citations: 25     Fields:    Translation:Animals
  16. Dorsett CR, McGuire JL, DePasquale EA, Gardner AE, Floyd CL, McCullumsmith RE. Glutamate Neurotransmission in Rodent Models of Traumatic Brain Injury. J Neurotrauma. 2017 01 15; 34(2):263-272. PMID: 27256113; PMCID: PMC5220558.
    Citations: 44     Fields:    Translation:HumansAnimalsCells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.