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Rui Duan, Ph.D.

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Biography
education and training
Duke University, Durham, NCMS2015
University of Pennsylvania, Philadelphia, PAPhD2020

Overview
overview
My research interests mainly focus on statistical and computational methods for integrating evidence from different data sources, identifying signals from high dimensional data, and accounting for suboptimality of real-world data, such as missing data and measurement errors.
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Bibliographic
selected publications
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Edmondson MJ, Luo C, Duan R, Maltenfort M, Chen Z, Locke K, Shults J, Bian J, Ryan PB, Forrest CB, Chen Y. An efficient and accurate distributed learning algorithm for modeling multi-site zero-inflated count outcomes. Sci Rep. 2021 Oct 04; 11(1):19647. PMID: 34608222.
    Citations:    Fields:    
  2. Tong J, Chen Z, Duan R, Lo-Ciganic WH, Lyu T, Tao C, Merkel PA, Kranzler HR, Bian J, Chen Y. Identifying Clinical Risk Factors for Opioid Use Disorder using a Distributed Algorithm to Combine Real-World Data from a Large Clinical Data Research Network. AMIA Annu Symp Proc. 2020; 2020:1220-1229. PMID: 33936498.
    Citations:    Fields:    Translation:Humans
  3. Duan R, Chen Z, Tong J, Luo C, Lyu T, Tao C, Maraganore D, Bian J, Chen Y. Leverage Real-world Longitudinal Data in Large Clinical Research Networks for Alzheimer's Disease and Related Dementia (ADRD). AMIA Annu Symp Proc. 2020; 2020:393-401. PMID: 33936412.
    Citations:    Fields:    Translation:Humans
  4. Falcone M, Luo C, Chen Y, Birtwell D, Cheatle M, Duan R, Gabriel PE, He L, Ko EM, Lenz HJ, Mirkovic N, Mowery DL, Ochroch EA, Paulson EC, Schriver E, Schnoll RA, Bekelman JE, Lerman C. Risk of Persistent Opioid Use following Major Surgery in Matched Samples of Patients with and without Cancer. Cancer Epidemiol Biomarkers Prev. 2020 11; 29(11):2126-2133. PMID: 32859580.
    Citations: 1     Fields:    
  5. Duan R, Luo C, Schuemie MJ, Tong J, Liang CJ, Chang HH, Boland MR, Bian J, Xu H, Holmes JH, Forrest CB, Morton SC, Berlin JA, Moore JH, Mahoney KB, Chen Y. Learning from local to global: An efficient distributed algorithm for modeling time-to-event data. J Am Med Inform Assoc. 2020 07 01; 27(7):1028-1036. PMID: 32626900.
    Citations: 5     Fields:    Translation:Humans
  6. Hubbard RA, Tong J, Duan R, Chen Y. Reducing Bias Due to Outcome Misclassification for Epidemiologic Studies Using EHR-derived Probabilistic Phenotypes. Epidemiology. 2020 07; 31(4):542-550. PMID: 32282406.
    Citations:    Fields:    Translation:Humans
  7. Tong J, Duan R, Li R, Scheuemie MJ, Moore JH, Chen Y. Robust-ODAL: Learning from heterogeneous health systems without sharing patient-level data. Pac Symp Biocomput. 2020; 25:695-706. PMID: 31797639.
    Citations: 4     Fields:    Translation:Humans
  8. Huang J, Zhang X, Tong J, Du J, Duan R, Yang L, Moore JH, Tao C, Chen Y. Comparing drug safety of hepatitis C therapies using post-market data. BMC Med Inform Decis Mak. 2019 08 08; 19(Suppl 4):147. PMID: 31391106.
    Citations: 2     Fields:    Translation:Humans
  9. Duan R, Zhang X, Du J, Huang J, Tao C, Chen Y. On the evidence consistency of pharmacovigilance outcomes between Food and Drug Administration Adverse Event Reporting System and electronic medical record data for acute mania patients. Health Informatics J. 2020 06; 26(2):753-764. PMID: 30887861.
    Citations:    Fields:    Translation:Humans
  10. Lin R, Amith MT, Liang C, Duan R, Chen Y, Tao C. Visualized Emotion Ontology: a model for representing visual cues of emotions. BMC Med Inform Decis Mak. 2018 07 23; 18(Suppl 2):64. PMID: 30066654.
    Citations: 3     Fields:    Translation:Humans
  11. Huang J, Du J, Duan R, Zhang X, Tao C, Chen Y. Characterization of the Differential Adverse Event Rates by Race/Ethnicity Groups for HPV Vaccine by Integrating Data From Different Sources. Front Pharmacol. 2018; 9:539. PMID: 29896103.
    Citations: 3     
  12. Duan R, Zhang X, Du J, Huang J, Tao C, Chen Y. Post-marketing Drug Safety Evaluation using Data Mining Based on FAERS. Data Min Big Data (2017). 2017; 2017:379-389. PMID: 30035271.
    Citations: 1     
  13. Duan R, Cao M, Wu Y, Huang J, Denny JC, Xu H, Chen Y. An Empirical Study for Impacts of Measurement Errors on EHR based Association Studies. AMIA Annu Symp Proc. 2016; 2016:1764-1773. PMID: 28269935.
    Citations: 11     Fields:    Translation:Humans
  14. Huang J, Zhang X, Du J, Duan R, Yang L, Moore JH, Chen Y, Tao C. Comparing Different Adverse Effects Among Multiple Drugs Using FAERS Data. Stud Health Technol Inform. 2017; 245:1268. PMID: 29295353.
    Citations:    Fields:    Translation:Humans
  15. Du J, Huang J, Duan R, Chen Y, Tao C. Comparing the Human Papillomavirus Vaccination Opinions Trends from Different Twitter User Groups with a Machine Learning Based System and Semiparametric Nonlinear Regression. Stud Health Technol Inform. 2017; 245:1218. PMID: 29295305.
    Citations:    Fields:    Translation:HumansPHPublic Health
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.