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Amanda Koire, M.D., Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Koire A, Nong YH, Cain CM, Greeley CS, Puryear LJ, Van Horne BS. Longer wait time after identification of peripartum depression symptoms is associated with increased symptom burden at psychiatric assessment. J Psychiatr Res. 2022 08; 152:360-365. PMID: 35785579.
    Citations:    Fields:    Translation:Humans
  2. Koire A, Joffe H, Buckley R. Menopausal Hormone Therapy and the Mind: The Role of Hormone Replacement in the Prevention and Treatment of Cognitive Decline, Dementia, and Cognitive Dysfunction of Depression. Harv Rev Psychiatry. 2022 Jul-Aug 01; 30(4):215-225. PMID: 35616610.
    Citations:    Fields:    Translation:Humans
  3. Liu CH, Koire A, Erdei C, Mittal L. Subjective social status, COVID-19 health worries, and mental health symptoms in perinatal women. SSM Popul Health. 2022 Jun; 18:101116. PMID: 35582494; PMCID: PMC9098429.
    Citations:    
  4. Peng CS, Koire AM, Eisendrath S, Abrams J, Feldman MD, Jimenez-Madiedo C. "Non-healing Wounds": Addressing Complex Physical and Emotional Trauma in a Case of Factitious Disorder. Harv Rev Psychiatry. 2022 May-Jun 01; 30(3):207-213. PMID: 35421012.
    Citations:    Fields:    Translation:Humans
  5. Koire A, Van Horne BS, Nong YH, Cain CM, Greeley CS, Puryear L. Patterns of peripartum depression screening and detection in a large, multi-site, integrated healthcare system. Arch Womens Ment Health. 2022 06; 25(3):603-610. PMID: 35332376.
    Citations:    Fields:    Translation:HumansPHPublic Health
  6. Hsu TK, Asmussen J, Koire A, Choi BK, Gadhikar MA, Huh E, Lin CH, Konecki DM, Kim YW, Pickering CR, Kimmel M, Donehower LA, Frederick MJ, Myers JN, Katsonis P, Lichtarge O. A general calculus of fitness landscapes finds genes under selection in cancers. Genome Res. 2022 05; 32(5):916-929. PMID: 35301263; PMCID: PMC9104707.
    Citations: 3     Fields:    Translation:Humans
  7. Erdei C, Feldman N, Koire A, Mittal L, Liu CHJ. COVID-19 Pandemic Experiences and Maternal Stress in Neonatal Intensive Care Units. Children (Basel). 2022 Feb 13; 9(2). PMID: 35204971; PMCID: PMC8870163.
    Citations:    
  8. Koire A, Mittal L, Erdei C, Liu CH. Maternal-fetal bonding during the COVID-19 pandemic. BMC Pregnancy Childbirth. 2021 Dec 28; 21(1):846. PMID: 34963458.
    Citations: 1     Fields:    Translation:HumansCells
  9. Lin HC, Zehnah PL, Koire A, Mittal L, Erdei C, Liu CH. Maternal Self-Efficacy Buffers the Effects of COVID-19-Related Experiences on Postpartum Parenting Stress. J Obstet Gynecol Neonatal Nurs. 2022 03; 51(2):177-194. PMID: 35114164; PMCID: PMC8709937.
    Citations: 1     Fields:    Translation:HumansCellsPHPublic Health
  10. Liu CH, Koire A, Erdei C, Mittal L. Unexpected changes in birth experiences during the COVID-19 pandemic: Implications for maternal mental health. Arch Gynecol Obstet. 2022 09; 306(3):687-697. PMID: 34724569; PMCID: PMC8558094.
    Citations: 5     Fields:    
  11. Koire A, Katsonis P, Kim YW, Buchovecky C, Wilson SJ, Lichtarge O. A method to delineate de novo missense variants across pathways prioritizes genes linked to autism. Sci Transl Med. 2021 05 19; 13(594). PMID: 34011629; PMCID: PMC8916821.
    Citations: 7     Fields:    Translation:Humans
  12. Conrad RC, Hahm HC, Koire A, Pinder-Amaker S, Liu CH. College student mental health risks during the COVID-19 pandemic: Implications of campus relocation. J Psychiatr Res. 2021 04; 136:117-126. PMID: 33588225.
    Citations: 31     Fields:    Translation:HumansPHPublic Health
  13. Kim YW, Al-Ramahi I, Koire A, Wilson SJ, Konecki DM, Mota S, Soleimani S, Botas J, Lichtarge O. Harnessing the paradoxical phenotypes of APOE ?2 and APOE ?4 to identify genetic modifiers in Alzheimer's disease. Alzheimers Dement. 2021 05; 17(5):831-846. PMID: 33576571; PMCID: PMC8247413.
    Citations: 7     Fields:    Translation:HumansAnimals
  14. Koire A, Chu DM, Aagaard K. Family history is a predictor of current preterm birth. Am J Obstet Gynecol MFM. 2021 01; 3(1):100277. PMID: 33451608.
    Citations: 3     Fields:    Translation:Humans
  15. Clarke CN, Katsonis P, Hsu TK, Koire AM, Silva-Figueroa A, Christakis I, Williams MD, Kutahyalioglu M, Kwatampora L, Xi Y, Lee JE, Koptez ES, Busaidy NL, Perrier ND, Lichtarge O. Comprehensive Genomic Characterization of Parathyroid Cancer Identifies Novel Candidate Driver Mutations and Core Pathways. J Endocr Soc. 2019 Mar 01; 3(3):544-559. PMID: 30788456; PMCID: PMC6372985.
    Citations: 18     
  16. Huang KL, Mashl RJ, Wu Y, Ritter DI, Wang J, Oh C, Paczkowska M, Reynolds S, Wyczalkowski MA, Oak N, Scott AD, Krassowski M, Cherniack AD, Houlahan KE, Jayasinghe R, Wang LB, Zhou DC, Liu D, Cao S, Kim YW, Koire A, McMichael JF, Hucthagowder V, Kim TB, Hahn A, Wang C, McLellan MD, Al-Mulla F, Johnson KJ, Lichtarge O, Boutros PC, Raphael B, Lazar AJ, Zhang W, Wendl MC, Govindan R, Jain S, Wheeler D, Kulkarni S, Dipersio JF, Reimand J, Meric-Bernstam F, Chen K, Shmulevich I, Plon SE, Chen F, Ding L. Pathogenic Germline Variants in 10,389 Adult Cancers. Cell. 2018 04 05; 173(2):355-370.e14. PMID: 29625052.
    Citations: 255     Fields:    Translation:HumansCells
  17. Gennarino VA, Palmer EE, McDonell LM, Wang L, Adamski CJ, Koire A, See L, Chen CA, Schaaf CP, Rosenfeld JA, Panzer JA, Moog U, Hao S, Bye A, Kirk EP, Stankiewicz P, Breman AM, McBride A, Kandula T, Dubbs HA, Macintosh R, Cardamone M, Zhu Y, Ying K, Dias KR, Cho MT, Henderson LB, Baskin B, Morris P, Tao J, Cowley MJ, Dinger ME, Roscioli T, Caluseriu O, Suchowersky O, Sachdev RK, Lichtarge O, Tang J, Boycott KM, Holder JL, Zoghbi HY. A Mild PUM1 Mutation Is Associated with Adult-Onset Ataxia, whereas Haploinsufficiency Causes Developmental Delay and Seizures. Cell. 2018 02 22; 172(5):924-936.e11. PMID: 29474920; PMCID: PMC5832058.
    Citations: 49     Fields:    Translation:HumansAnimalsCells
  18. Koire A, Gilbert BE, Sucgang R, Zechiedrich L. Correction: Repurposed Transcriptomic Data Reveal Small Viral RNA Produced by Influenza Virus during Infection in Mice. PLoS One. 2017; 12(12):e0189384. PMID: 29206873.
    Citations:    Fields:    
  19. Koire A, Kim YW, Wang J, Katsonis P, Jin H, Lichtarge O. Codon-level co-occurrences of germline variants and somatic mutations in cancer are rare but often lead to incorrect variant annotation and underestimated impact prediction. PLoS One. 2017; 12(3):e0174766. PMID: 28350864.
    Citations:    Fields:    Translation:HumansCells
  20. Gallion J, Koire A, Katsonis P, Schoenegge AM, Bouvier M, Lichtarge O. Predicting phenotype from genotype: Improving accuracy through more robust experimental and computational modeling. Hum Mutat. 2017 05; 38(5):569-580. PMID: 28230923.
    Citations: 16     Fields:    Translation:HumansCells
  21. Koire A, Gilbert BE, Sucgang R, Zechiedrich L. Repurposed Transcriptomic Data Reveal Small Viral RNA Produced by Influenza Virus during Infection in Mice. PLoS One. 2016; 11(10):e0165729. PMID: 27788253.
    Citations: 3     Fields:    Translation:AnimalsCells
  22. Koire A, Katsonis P, Lichtarge O. REPURPOSING GERMLINE EXOMES OF THE CANCER GENOME ATLAS DEMANDS A CAUTIOUS APPROACH AND SAMPLE-SPECIFIC VARIANT FILTERING. Pac Symp Biocomput. 2016; 21:207-18. PMID: 26776187.
    Citations: 13     Fields:    Translation:Humans
  23. Katsonis P, Koire A, Wilson SJ, Hsu TK, Lua RC, Wilkins AD, Lichtarge O. Single nucleotide variations: biological impact and theoretical interpretation. Protein Sci. 2014 Dec; 23(12):1650-66. PMID: 25234433.
    Citations: 38     Fields:    Translation:Humans
  24. Koire AM, Cavalcanti AR. Fusion of the subunits a and ß of succinyl-CoA synthetase as a phylogenetic marker for Pezizomycotina fungi. Genet Mol Biol. 2011 Oct; 34(4):669-75. PMID: 22215972.
    Citations: 1     
  25. Salim HM, Koire AM, Stover NA, Cavalcanti AR. Detection of fused genes in eukaryotic genomes using gene deFuser: analysis of the Tetrahymena thermophila genome. BMC Bioinformatics. 2011 Jul 11; 12:279. PMID: 21745395.
    Citations: 6     Fields:    Translation:Animals
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.