Harvard Catalyst Profiles

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Markus D Herrmann, M.D.


Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Bridge CP, Gorman C, Pieper S, Doyle SW, Lennerz JK, Kalpathy-Cramer J, Clunie DA, Fedorov AY, Herrmann MD. Highdicom: a Python Library for Standardized Encoding of Image Annotations and Machine Learning Model Outputs in Pathology and Radiology. J Digit Imaging. 2022 Aug 22. PMID: 35995898.
    Citations:    Fields:    
  2. Schapiro D, Yapp C, Sokolov A, Reynolds SM, Chen YA, Sudar D, Xie Y, Muhlich J, Arias-Camison R, Arena S, Taylor AJ, Nikolov M, Tyler M, Lin JR, Burlingame EA, Chang YH, Farhi SL, Thorsson V, Venkatamohan N, Drewes JL, Pe'er D, Gutman DA, Herrmann MD, Gehlenborg N, Bankhead P, Roland JT, Herndon JM, Snyder MP, Angelo M, Nolan G, Swedlow JR, Schultz N, Merrick DT, Mazzili SA, Cerami E, Rodig SJ, Santagata S, Sorger PK. MITI minimum information guidelines for highly multiplexed tissue images. Nat Methods. 2022 03; 19(3):262-267. PMID: 35277708; PMCID: PMC9009186.
    Citations: 6     Fields:    
  3. Dudgeon SN, Wen S, Hanna MG, Gupta R, Amgad M, Sheth M, Marble H, Huang R, Herrmann MD, Szu CH, Tong D, Werness B, Szu E, Larsimont D, Madabhushi A, Hytopoulos E, Chen W, Singh R, Hart SN, Sharma A, Saltz J, Salgado R, Gallas BD. A Pathologist-Annotated Dataset for Validating Artificial Intelligence: A Project Description and Pilot Study. J Pathol Inform. 2021; 12:45. PMID: 34881099; PMCID: PMC8609287.
    Citations: 5     
  4. Bompoti A, Papazoglou AS, Moysidis DV, Otountzidis N, Karagiannidis E, Stalikas N, Panteris E, Ganesh V, Sanctuary T, Arvanitidis C, Sianos G, Michaelson JS, Herrmann MD. Volumetric Imaging of Lung Tissue at Micrometer Resolution: Clinical Applications of Micro-CT for the Diagnosis of Pulmonary Diseases. Diagnostics (Basel). 2021 Nov 10; 11(11). PMID: 34829422.
  5. Fedorov A, Longabaugh WJR, Pot D, Clunie DA, Pieper S, Aerts HJWL, Homeyer A, Lewis R, Akbarzadeh A, Bontempi D, Clifford W, Herrmann MD, Höfener H, Octaviano I, Osborne C, Paquette S, Petts J, Punzo D, Reyes M, Schacherer DP, Tian M, White G, Ziegler E, Shmulevich I, Pihl T, Wagner U, Farahani K, Kikinis R. NCI Imaging Data Commons. Cancer Res. 2021 08 15; 81(16):4188-4193. PMID: 34185678.
    Citations: 1     Fields:    Translation:Humans
  6. Papazoglou AS, Karagiannidis E, Moysidis DV, Sofidis G, Bompoti A, Stalikas N, Panteris E, Arvanitidis C, Herrmann MD, Michaelson JS, Sianos G. Current clinical applications and potential perspective of micro-computed tomography in cardiovascular imaging: A systematic scoping review. Hellenic J Cardiol. 2021 Nov-Dec; 62(6):399-407. PMID: 33991670.
    Citations: 3     Fields:    Translation:HumansAnimals
  7. Dash RC, Jones N, Merrick R, Haroske G, Harrison J, Sayers C, Haarselhorst N, Wintell M, Herrmann MD, Macary F. Integrating the Health-care Enterprise Pathology and Laboratory Medicine Guideline for Digital Pathology Interoperability. J Pathol Inform. 2021; 12:16. PMID: 34221632; PMCID: PMC8240547.
    Citations: 3     
  8. Herrmann MD, Lennerz JK. [Technical, operational, and regulatory considerations for the adoption of digital and computational pathology]. Pathologe. 2020 Dec; 41(Suppl 2):103-110. PMID: 33263808.
    Citations:    Fields:    Translation:Humans
  9. Marble HD, Huang R, Dudgeon SN, Lowe A, Herrmann MD, Blakely S, Leavitt MO, Isaacs M, Hanna MG, Sharma A, Veetil J, Goldberg P, Schmid JH, Lasiter L, Gallas BD, Abels E, Lennerz JK. A Regulatory Science Initiative to Harmonize and Standardize Digital Pathology and Machine Learning Processes to Speed up Clinical Innovation to Patients. J Pathol Inform. 2020; 11:22. PMID: 33042601; PMCID: PMC7518200.
    Citations: 10     
  10. Fedorov A, Beichel R, Kalpathy-Cramer J, Clunie D, Onken M, Riesmeier J, Herz C, Bauer C, Beers A, Fillion-Robin JC, Lasso A, Pinter C, Pieper S, Nolden M, Maier-Hein K, Herrmann MD, Saltz J, Prior F, Fennessy F, Buatti J, Kikinis R. Quantitative Imaging Informatics for Cancer Research. JCO Clin Cancer Inform. 2020 05; 4:444-453. PMID: 32392097.
    Citations: 6     Fields:    Translation:Humans
  11. Herrmann MD, Clunie DA, Fedorov A, Doyle SW, Pieper S, Klepeis V, Le LP, Mutter GL, Milstone DS, Schultz TJ, Kikinis R, Kotecha GK, Hwang DH, Andriole KP, Iafrate AJ, Brink JA, Boland GW, Dreyer KJ, Michalski M, Golden JA, Louis DN, Lennerz JK. Implementing the DICOM Standard for Digital Pathology. J Pathol Inform. 2018; 9:37. PMID: 30533276; PMCID: PMC6236926.
    Citations: 27     
  12. Gut G, Herrmann MD, Pelkmans L. Multiplexed protein maps link subcellular organization to cellular states. Science. 2018 08 03; 361(6401). PMID: 30072512.
    Citations: 98     Fields:    Translation:HumansCells
  13. Caicedo JC, Cooper S, Heigwer F, Warchal S, Qiu P, Molnar C, Vasilevich AS, Barry JD, Bansal HS, Kraus O, Wawer M, Paavolainen L, Herrmann MD, Rohban M, Hung J, Hennig H, Concannon J, Smith I, Clemons PA, Singh S, Rees P, Horvath P, Linington RG, Carpenter AE. Data-analysis strategies for image-based cell profiling. Nat Methods. 2017 Aug 31; 14(9):849-863. PMID: 28858338; PMCID: PMC6871000.
    Citations: 156     Fields:    Translation:HumansAnimals
  14. Stoeger T, Battich N, Herrmann MD, Yakimovich Y, Pelkmans L. Computer vision for image-based transcriptomics. Methods. 2015 Sep 01; 85:44-53. PMID: 26014038.
    Citations: 11     Fields:    Translation:HumansAnimalsCells
  15. Nagel PD, Stenzinger A, Feld FM, Herrmann MD, Brüderlein S, Barth TF, Marienfeld R, Endris V, Weichert W, Debatin KM, Westhoff MA, Lessel D, Möller P, Lennerz JK. KIT mutations in primary mediastinal B-cell lymphoma. Blood Cancer J. 2014 Aug 22; 4:e241. PMID: 25148223.
    Citations: 1     Fields:    Translation:HumansCells
  16. Herrmann MD, Neumayr A, Essig A, Spiess J, Merk J, Möller P, Liebold A, Barth TF. Isolated Whipple's endocarditis: an underestimated diagnosis that requires molecular analysis of surgical material. Ann Thorac Surg. 2014 Jul; 98(1):e1-3. PMID: 24996742.
    Citations: 3     Fields:    Translation:HumansCells
  17. Herrmann MD, Lennerz JK, Bullinger L, Bartholomae S, Holzmann K, Westhoff MA, Corbacioglu S, Debatin KM. Transitory dasatinib-resistant states in KIT(mut) t(8;21) acute myeloid leukemia cells correlate with altered KIT expression. Exp Hematol. 2014 Feb; 42(2):90-100. PMID: 24211243.
    Citations: 3     Fields:    Translation:HumansCells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.