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Rene Niehus, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Reich NG, Lessler J, Funk S, Viboud C, Vespignani A, Tibshirani RJ, Shea K, Schienle M, Runge MC, Rosenfeld R, Ray EL, Niehus R, Johnson HC, Johansson MA, Hochheiser H, Gardner L, Bracher J, Borchering RK, Biggerstaff M. Collaborative Hubs: Making the Most of Predictive Epidemic Modeling. Am J Public Health. 2022 06; 112(6):839-842. PMID: 35420897; PMCID: PMC9137029.
    Citations:    Fields:    Translation:HumansPHPublic Health
  2. Suk JE, Pharris A, Beauté J, Colzani E, Needham H, Kinsman J, Niehus R, Grah R, Omokanye A, Plachouras D, Baka A, Prasse B, Sandmann F, Severi E, Alm E, Wiltshire E, Ciancio B. Public health considerations for transitioning beyond the acute phase of the COVID-19 pandemic in the EU/EEA. Euro Surveill. 2022 04; 27(17). PMID: 35485272; PMCID: PMC9052765.
    Citations:    Fields:    Translation:HumansCellsPHPublic Health
  3. Gostic KM, McGough L, Baskerville EB, Abbott S, Joshi K, Tedijanto C, Kahn R, Niehus R, Hay JA, De Salazar PM, Hellewell J, Meakin S, Munday JD, Bosse NI, Sherrat K, Thompson RN, White LF, Huisman JS, Scire J, Bonhoeffer S, Stadler T, Wallinga J, Funk S, Lipsitch M, Cobey S. Correction: Practical considerations for measuring the effective reproductive number, Rt. PLoS Comput Biol. 2021 Dec; 17(12):e1009679. PMID: 34879070.
    Citations:    Fields:    
  4. Niehus R, Oliveira NM, Li A, Fletcher AG, Foster KR. The evolution of strategy in bacterial warfare via the regulation of bacteriocins and antibiotics. Elife. 2021 09 07; 10. PMID: 34488940; PMCID: PMC8423443.
    Citations: 2     Fields:    
  5. Auguet OT, Niehus R, Gweon HS, Berkley JA, Waichungo J, Njim T, Edgeworth JD, Batra R, Chau K, Swann J, Walker SA, Peto TEA, Crook DW, Lamble S, Turner P, Cooper BS, Stoesser N. Population-level faecal metagenomic profiling as a tool to predict antimicrobial resistance in Enterobacterales isolates causing invasive infections: An exploratory study across Cambodia, Kenya, and the UK. EClinicalMedicine. 2021 Jun; 36:100910. PMID: 34124634; PMCID: PMC8173267.
    Citations: 1     
  6. Accorsi EK, Qiu X, Rumpler E, Kennedy-Shaffer L, Kahn R, Joshi K, Goldstein E, Stensrud MJ, Niehus R, Cevik M, Lipsitch M. How to detect and reduce potential sources of biases in studies of SARS-CoV-2 and COVID-19. Eur J Epidemiol. 2021 Feb; 36(2):179-196. PMID: 33634345.
    Citations: 32     Fields:    Translation:HumansCells
  7. Menkir TF, Chin T, Hay JA, Surface ED, De Salazar PM, Buckee CO, Watts A, Khan K, Sherbo R, Yan AWC, Mina MJ, Lipsitch M, Niehus R. Estimating internationally imported cases during the early COVID-19 pandemic. Nat Commun. 2021 01 12; 12(1):311. PMID: 33436574.
    Citations: 7     Fields:    Translation:HumansCellsPHPublic Health
  8. Gostic KM, McGough L, Baskerville EB, Abbott S, Joshi K, Tedijanto C, Kahn R, Niehus R, Hay JA, De Salazar PM, Hellewell J, Meakin S, Munday JD, Bosse NI, Sherrat K, Thompson RN, White LF, Huisman JS, Scire J, Bonhoeffer S, Stadler T, Wallinga J, Funk S, Lipsitch M, Cobey S. Practical considerations for measuring the effective reproductive number, Rt. PLoS Comput Biol. 2020 12; 16(12):e1008409. PMID: 33301457.
    Citations: 97     Fields:    Translation:HumansCellsPHPublic Health
  9. Schluter J, Peled JU, Taylor BP, Markey KA, Smith M, Taur Y, Niehus R, Staffas A, Dai A, Fontana E, Amoretti LA, Wright RJ, Morjaria S, Fenelus M, Pessin MS, Chao NJ, Lew M, Bohannon L, Bush A, Sung AD, Hohl TM, Perales MA, van den Brink MRM, Xavier JB. The gut microbiota is associated with immune cell dynamics in humans. Nature. 2020 12; 588(7837):303-307. PMID: 33239790; PMCID: PMC7725892.
    Citations: 86     Fields:    Translation:HumansCells
  10. Gostic KM, McGough L, Baskerville EB, Abbott S, Joshi K, Tedijanto C, Kahn R, Niehus R, Hay J, De Salazar PM, Hellewell J, Meakin S, Munday J, Bosse NI, Sherrat K, Thompson RN, White LF, Huisman JS, Scire J, Bonhoeffer S, Stadler T, Wallinga J, Funk S, Lipsitch M, Cobey S. Practical considerations for measuring the effective reproductive number, Rt. medRxiv. 2020 Aug 28. PMID: 32607522; PMCID: PMC7325187.
    Citations:    
  11. Menkir TF, Chin T, Hay J, Surface ED, De Salazar PM, Buckee CO, Watts A, Khan K, Sherbo R, Yan AWC, Mina M, Lipsitch M, Niehus R. Estimating internationally imported cases during the early COVID-19 pandemic. medRxiv. 2020 Jul 17. PMID: 32511613; PMCID: PMC7276040.
    Citations:    
  12. Wu JT, Leung K, Bushman M, Kishore N, Niehus R, de Salazar PM, Cowling BJ, Lipsitch M, Leung GM. Addendum: Estimating clinical severity of COVID-19 from the transmission dynamics in Wuhan, China. Nat Med. 2020 07; 26(7):1149-1150. PMID: 32661399.
    Citations: 8     Fields:    
  13. Niehus R, van Kleef E, Mo Y, Turlej-Rogacka A, Lammens C, Carmeli Y, Goossens H, Tacconelli E, Carevic B, Preotescu L, Malhotra-Kumar S, Cooper BS. Quantifying antibiotic impact on within-patient dynamics of extended-spectrum beta-lactamase resistance. Elife. 2020 05 07; 9. PMID: 32379042; PMCID: PMC7205461.
    Citations: 7     Fields:    Translation:HumansCells
  14. Niehus R, De Salazar PM, Taylor AR, Lipsitch M. Using observational data to quantify bias of traveller-derived COVID-19 prevalence estimates in Wuhan, China. Lancet Infect Dis. 2020 07; 20(7):803-808. PMID: 32246905.
    Citations: 30     Fields:    Translation:HumansCellsPHPublic Health
  15. Wu JT, Leung K, Bushman M, Kishore N, Niehus R, de Salazar PM, Cowling BJ, Lipsitch M, Leung GM. Estimating clinical severity of COVID-19 from the transmission dynamics in Wuhan, China. Nat Med. 2020 04; 26(4):506-510. PMID: 32284616; PMCID: PMC7094929.
    Citations: 464     Fields:    Translation:HumansCellsPHPublic Health
  16. Niehus R, De Salazar PM, Taylor AR, Lipsitch M. Quantifying bias of COVID-19 prevalence and severity estimates in Wuhan, China that depend on reported cases in international travelers. medRxiv. 2020 Feb 18. PMID: 32511442; PMCID: PMC7239063.
    Citations:    
  17. Gweon HS, Shaw LP, Swann J, De Maio N, AbuOun M, Niehus R, Hubbard ATM, Bowes MJ, Bailey MJ, Peto TEA, Hoosdally SJ, Walker AS, Sebra RP, Crook DW, Anjum MF, Read DS, Stoesser N. The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples. Environ Microbiome. 2019 Oct 24; 14(1):7. PMID: 33902704.
    Citations: 12     
  18. Niehus R, Mitri S. Handling unpredictable ecosystems. Nat Ecol Evol. 2018 08; 2(8):1207-1208. PMID: 29988165.
    Citations: 1     Fields:    
  19. Niehus R, Picot A, Oliveira NM, Mitri S, Foster KR. The evolution of siderophore production as a competitive trait. Evolution. 2017 06; 71(6):1443-1455. PMID: 28323325.
    Citations: 39     Fields:    Translation:Cells
  20. Niehus R, Mitri S, Fletcher AG, Foster KR. Migration and horizontal gene transfer divide microbial genomes into multiple niches. Nat Commun. 2015 Nov 23; 6:8924. PMID: 26592443; PMCID: PMC4673824.
    Citations: 41     Fields:    Translation:Cells
  21. Oliveira NM, Niehus R, Foster KR. Evolutionary limits to cooperation in microbial communities. Proc Natl Acad Sci U S A. 2014 Dec 16; 111(50):17941-6. PMID: 25453102; PMCID: PMC4273359.
    Citations: 69     Fields:    
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.