Harvard Catalyst Profiles

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Dan Davidi, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Davidi D, Schechter M, Elhadi SA, Matatov A, Nathanson L, Sharon R. a-Synuclein Translocates to the Nucleus to Activate Retinoic-Acid-Dependent Gene Transcription. iScience. 2020 Mar 27; 23(3):100910. PMID: 32120069.
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  2. Flamholz AI, Prywes N, Moran U, Davidi D, Bar-On YM, Oltrogge LM, Alves R, Savage D, Milo R. Revisiting Trade-offs between Rubisco Kinetic Parameters. Biochemistry. 2019 08 06; 58(31):3365-3376. PMID: 31259528.
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  3. Noda-García L, Davidi D, Korenblum E, Elazar A, Putintseva E, Aharoni A, Tawfik DS. Chance and pleiotropy dominate genetic diversity in complex bacterial environments. Nat Microbiol. 2019 07; 4(7):1221-1230. PMID: 30936490.
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  4. Weill U, Yofe I, Sass E, Stynen B, Davidi D, Natarajan J, Ben-Menachem R, Avihou Z, Goldman O, Harpaz N, Chuartzman S, Kniazev K, Knoblach B, Laborenz J, Boos F, Kowarzyk J, Ben-Dor S, Zalckvar E, Herrmann JM, Rachubinski RA, Pines O, Rapaport D, Michnick SW, Levy ED, Schuldiner M. Author Correction: Genome-wide SWAp-Tag yeast libraries for proteome exploration. Nat Methods. 2019 Feb; 16(2):205. PMID: 30602782.
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  5. Weill U, Krieger G, Avihou Z, Milo R, Schuldiner M, Davidi D. Assessment of GFP Tag Position on Protein Localization and Growth Fitness in Yeast. J Mol Biol. 2019 02 01; 431(3):636-641. PMID: 30550779.
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  6. Davidi D, Longo LM, Jablonska J, Milo R, Tawfik DS. A Bird's-Eye View of Enzyme Evolution: Chemical, Physicochemical, and Physiological Considerations. Chem Rev. 2018 09 26; 118(18):8786-8797. PMID: 30133258.
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  7. Weill U, Yofe I, Sass E, Stynen B, Davidi D, Natarajan J, Ben-Menachem R, Avihou Z, Goldman O, Harpaz N, Chuartzman S, Kniazev K, Knoblach B, Laborenz J, Boos F, Kowarzyk J, Ben-Dor S, Zalckvar E, Herrmann JM, Rachubinski RA, Pines O, Rapaport D, Michnick SW, Levy ED, Schuldiner M. Genome-wide SWAp-Tag yeast libraries for proteome exploration. Nat Methods. 2018 08; 15(8):617-622. PMID: 29988094.
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  8. Herz E, Antonovsky N, Bar-On Y, Davidi D, Gleizer S, Prywes N, Noda-Garcia L, Lyn Frisch K, Zohar Y, Wernick DG, Savidor A, Barenholz U, Milo R. The genetic basis for the adaptation of E. coli to sugar synthesis from CO2. Nat Commun. 2017 11 22; 8(1):1705. PMID: 29167457.
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  9. Grigoletto J, Pukaß K, Gamliel A, Davidi D, Katz-Brull R, Richter-Landsberg C, Sharon R. Higher levels of myelin phospholipids in brains of neuronal a-Synuclein transgenic mice precede myelin loss. Acta Neuropathol Commun. 2017 05 08; 5(1):37. PMID: 28482862.
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  10. Davidi D, Milo R. Lessons on enzyme kinetics from quantitative proteomics. Curr Opin Biotechnol. 2017 08; 46:81-89. PMID: 28288339.
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  11. Barenholz U, Davidi D, Reznik E, Bar-On Y, Antonovsky N, Noor E, Milo R. Design principles of autocatalytic cycles constrain enzyme kinetics and force low substrate saturation at flux branch points. Elife. 2017 02 07; 6. PMID: 28169831.
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  12. Noor E, Flamholz A, Bar-Even A, Davidi D, Milo R, Liebermeister W. The Protein Cost of Metabolic Fluxes: Prediction from Enzymatic Rate Laws and Cost Minimization. PLoS Comput Biol. 2016 Nov; 12(11):e1005167. PMID: 27812109.
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  13. Antonovsky N, Gleizer S, Noor E, Zohar Y, Herz E, Barenholz U, Zelcbuch L, Amram S, Wides A, Tepper N, Davidi D, Bar-On Y, Bareia T, Wernick DG, Shani I, Malitsky S, Jona G, Bar-Even A, Milo R. Sugar Synthesis from CO2 in Escherichia coli. Cell. 2016 Jun 30; 166(1):115-25. PMID: 27345370.
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  14. Davidi D, Noor E, Liebermeister W, Bar-Even A, Flamholz A, Tummler K, Barenholz U, Goldenfeld M, Shlomi T, Milo R. Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements. Proc Natl Acad Sci U S A. 2016 Mar 22; 113(12):3401-6. PMID: 26951675.
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  15. Keren L, van Dijk D, Weingarten-Gabbay S, Davidi D, Jona G, Weinberger A, Milo R, Segal E. Noise in gene expression is coupled to growth rate. Genome Res. 2015 Dec; 25(12):1893-902. PMID: 26355006.
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  16. Liebermeister W, Noor E, Flamholz A, Davidi D, Bernhardt J, Milo R. Visual account of protein investment in cellular functions. Proc Natl Acad Sci U S A. 2014 Jun 10; 111(23):8488-93. PMID: 24889604.
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  17. Davidi D, Sade D, Schuchalter S, Gazit E. High-throughput assay for temporal kinetic analysis of lytic coliphage activity. Anal Biochem. 2014 Jan 01; 444:22-4. PMID: 24055749.
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  18. Shaltiel-Karyo R, Davidi D, Menuchin Y, Frenkel-Pinter M, Marcus-Kalish M, Ringo J, Gazit E, Segal D. A novel, sensitive assay for behavioral defects in Parkinson's disease model Drosophila. Parkinsons Dis. 2012; 2012:697564. PMID: 22888468.
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  19. Noor E, Bar-Even A, Flamholz A, Lubling Y, Davidi D, Milo R. An integrated open framework for thermodynamics of reactions that combines accuracy and coverage. Bioinformatics. 2012 Aug 01; 28(15):2037-44. PMID: 22645166.
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  20. Shaltiel-Karyo R, Davidi D, Frenkel-Pinter M, Ovadia M, Segal D, Gazit E. Differential inhibition of a-synuclein oligomeric and fibrillar assembly in parkinson's disease model by cinnamon extract. Biochim Biophys Acta. 2012 Oct; 1820(10):1628-35. PMID: 22575665.
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  21. Bar-Even A, Noor E, Savir Y, Liebermeister W, Davidi D, Tawfik DS, Milo R. The moderately efficient enzyme: evolutionary and physicochemical trends shaping enzyme parameters. Biochemistry. 2011 May 31; 50(21):4402-10. PMID: 21506553.
    Citations: 113     Fields:    
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.