Harvard Catalyst Profiles

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Davood Karimi, Ph.D.


Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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  1. Calixto C, Machado-Rivas F, Karimi D, Cortes-Albornoz MC, Acosta-Buitrago LM, Gallo-Bernal S, Afacan O, Warfield SK, Gholipour A, Jaimes C. Detailed anatomic segmentations of a fetal brain diffusion tensor imaging atlas between 23 and 30?weeks of gestation. Hum Brain Mapp. 2022 Nov 24. PMID: 36421003.
    Citations:    Fields:    
  2. van der Weijden CW, van der Hoorn A, Potze JH, Renken RJ, Borra RJ, Dierckx RA, Gutmann IW, Ouaalam H, Karimi D, Gholipour A, Warfield SK, de Vries EF, Meilof JF. Diffusion-derived parameters in lesions, peri-lesion and normal-appearing white matter in multiple sclerosis using tensor, kurtosis and fixel-based analysis. J Cereb Blood Flow Metab. 2022 11; 42(11):2095-2106. PMID: 35754351; PMCID: PMC9580168.
    Citations:    Fields:    
  3. Karimi D, Gholipour A. Diffusion tensor estimation with transformer neural networks. Artif Intell Med. 2022 08; 130:102330. PMID: 35809969; PMCID: PMC9675900.
    Citations:    Fields:    Translation:Humans
  4. Maffei C, Girard G, Schilling KG, Aydogan DB, Adluru N, Zhylka A, Wu Y, Mancini M, Hamamci A, Sarica A, Teillac A, Baete SH, Karimi D, Yeh FC, Yildiz ME, Gholipour A, Bihan-Poudec Y, Hiba B, Quattrone A, Quattrone A, Boshkovski T, Stikov N, Yap PT, de Luca A, Pluim J, Leemans A, Prabhakaran V, Bendlin BB, Alexander AL, Landman BA, Canales-Rodríguez EJ, Barakovic M, Rafael-Patino J, Yu T, Rensonnet G, Schiavi S, Daducci A, Pizzolato M, Fischi-Gomez E, Thiran JP, Dai G, Grisot G, Lazovski N, Puch S, Ramos M, Rodrigues P, Prckovska V, Jones R, Lehman J, Haber SN, Yendiki A. Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. Neuroimage. 2022 08 15; 257:119327. PMID: 35636227; PMCID: PMC9453851.
    Citations:    Fields:    Translation:HumansCells
  5. Karimi D, Dou H, Gholipour A. Medical Image Segmentation Using Transformer Networks. IEEE Access. 2022; 10:29322-29332. PMID: 35656515; PMCID: PMC9159704.
  6. Ai M, Cheng J, Karimi D, Salcudean SE, Rohling R, Abolmaesumi P, Tang S. Investigation of photoacoustic tomography reconstruction with a limited view from linear array. J Biomed Opt. 2021 09; 26(9). PMID: 34585543.
    Citations:    Fields:    
  7. Karimi D, Jaimes C, Machado-Rivas F, Vasung L, Khan S, Warfield SK, Gholipour A. Deep learning-based parameter estimation in fetal diffusion-weighted MRI. Neuroimage. 2021 11; 243:118482. PMID: 34455242; PMCID: PMC8573718.
    Citations: 1     Fields:    Translation:Humans
  8. Karimi D, Vasung L, Jaimes C, Machado-Rivas F, Warfield SK, Gholipour A. Learning to estimate the fiber orientation distribution function from diffusion-weighted MRI. Neuroimage. 2021 10 01; 239:118316. PMID: 34182101; PMCID: PMC8385546.
    Citations: 1     Fields:    Translation:HumansCells
  9. Karimi D, Vasung L, Jaimes C, Machado-Rivas F, Khan S, Warfield SK, Gholipour A. A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging. Med Image Anal. 2021 08; 72:102129. PMID: 34182203; PMCID: PMC8320341.
    Citations: 1     Fields:    Translation:Humans
  10. Karimi D, Warfield SK, Gholipour A. Transfer learning in medical image segmentation: New insights from analysis of the dynamics of model parameters and learned representations. Artif Intell Med. 2021 06; 116:102078. PMID: 34020754; PMCID: PMC8164174.
    Citations: 8     Fields:    Translation:Humans
  11. Dou H, Karimi D, Rollins CK, Ortinau CM, Vasung L, Velasco-Annis C, Ouaalam A, Yang X, Ni D, Gholipour A. A Deep Attentive Convolutional Neural Network for Automatic Cortical Plate Segmentation in Fetal MRI. IEEE Trans Med Imaging. 2021 04; 40(4):1123-1133. PMID: 33351755; PMCID: PMC8016740.
    Citations: 2     Fields:    
  12. Karimi D, Dou H, Warfield SK, Gholipour A. Deep learning with noisy labels: Exploring techniques and remedies in medical image analysis. Med Image Anal. 2020 10; 65:101759. PMID: 32623277.
    Citations: 32     Fields:    Translation:Humans
  13. Karimi D, Peters JM, Ouaalam A, Prabhu SP, Sahin M, Krueger DA, Kolevzon A, Eng C, Warfield SK, Gholipour A. LEARNING TO DETECT BRAIN LESIONS FROM NOISY ANNOTATIONS. Proc IEEE Int Symp Biomed Imaging. 2020 Apr; 2020:1910-1914. PMID: 32879655.
    Citations: 2     
  14. Golshan M, Karimi D, Mahdavi S, Lobo J, Peacock M, Salcudean SE, Spadinger I. Automatic detection of brachytherapy seeds in 3D ultrasound images using a convolutional neural network. Phys Med Biol. 2020 02 05; 65(3):035016. PMID: 31860899.
    Citations: 1     Fields:    Translation:Humans
  15. Karimi D, Nir G, Fazli L, Black PC, Goldenberg L, Salcudean SE. Deep Learning-Based Gleason Grading of Prostate Cancer From Histopathology Images-Role of Multiscale Decision Aggregation and Data Augmentation. IEEE J Biomed Health Inform. 2020 05; 24(5):1413-1426. PMID: 31567104.
    Citations: 13     Fields:    Translation:Humans
  16. Karimi D, Salcudean SE. Reducing the Hausdorff Distance in Medical Image Segmentation With Convolutional Neural Networks. IEEE Trans Med Imaging. 2020 02; 39(2):499-513. PMID: 31329113.
    Citations: 25     Fields:    Translation:Humans
  17. Karimi D, Zeng Q, Mathur P, Avinash A, Mahdavi S, Spadinger I, Abolmaesumi P, Salcudean SE. Accurate and robust deep learning-based segmentation of the prostate clinical target volume in ultrasound images. Med Image Anal. 2019 10; 57:186-196. PMID: 31325722.
    Citations: 14     Fields:    Translation:Humans
  18. Nir G, Karimi D, Goldenberg SL, Fazli L, Skinnider BF, Tavassoli P, Turbin D, Villamil CF, Wang G, Thompson DJS, Black PC, Salcudean SE. Comparison of Artificial Intelligence Techniques to Evaluate Performance of a Classifier for Automatic Grading of Prostate Cancer From Digitized Histopathologic Images. JAMA Netw Open. 2019 03 01; 2(3):e190442. PMID: 30848813; PMCID: PMC6484626.
    Citations: 16     Fields:    Translation:Humans
  19. Nir G, Hor S, Karimi D, Fazli L, Skinnider BF, Tavassoli P, Turbin D, Villamil CF, Wang G, Wilson RS, Iczkowski KA, Lucia MS, Black PC, Abolmaesumi P, Goldenberg SL, Salcudean SE. Automatic grading of prostate cancer in digitized histopathology images: Learning from multiple experts. Med Image Anal. 2018 12; 50:167-180. PMID: 30340027.
    Citations: 22     Fields:    Translation:Humans
  20. Karimi D, Samei G, Kesch C, Nir G, Salcudean SE. Prostate segmentation in MRI using a convolutional neural network architecture and training strategy based on statistical shape models. Int J Comput Assist Radiol Surg. 2018 Aug; 13(8):1211-1219. PMID: 29766373.
    Citations: 13     Fields:    Translation:Humans
  21. Zeng Q, Samei G, Karimi D, Kesch C, Mahdavi SS, Abolmaesumi P, Salcudean SE. Prostate segmentation in transrectal ultrasound using magnetic resonance imaging priors. Int J Comput Assist Radiol Surg. 2018 Jun; 13(6):749-757. PMID: 29589259.
    Citations: 3     Fields:    Translation:Humans
  22. Karimi D, Ward RK. Patch-based models and algorithms for image processing: a review of the basic principles and methods, and their application in computed tomography. Int J Comput Assist Radiol Surg. 2016 Oct; 11(10):1765-77. PMID: 27287761.
    Citations: 2     Fields:    Translation:Humans
  23. Karimi D, Ward RK. Sinogram denoising via simultaneous sparse representation in learned dictionaries. Phys Med Biol. 2016 May 07; 61(9):3536-53. PMID: 27055224.
    Citations: 5     Fields:    Translation:HumansAnimals
  24. Karimi D, Ward R. Reducing streak artifacts in computed tomography via sparse representation in coupled dictionaries. Med Phys. 2016 Mar; 43(3):1473-86. PMID: 26936731.
    Citations: 4     Fields:    Translation:Humans
  25. Karimi D, Deman P, Ward R, Ford N. A sinogram denoising algorithm for low-dose computed tomography. BMC Med Imaging. 2016 Jan 22; 16:11. PMID: 26800667.
    Citations: 3     Fields:    Translation:Humans
  26. Karimi D, Ward R. A denoising algorithm for projection measurements in cone-beam computed tomography. Comput Biol Med. 2016 Feb 01; 69:71-82. PMID: 26735188.
    Citations:    Fields:    Translation:Humans
  27. Karimi D, Ward R. On the computational implementation of forward and back-projection operations for cone-beam computed tomography. Med Biol Eng Comput. 2016 Aug; 54(8):1193-204. PMID: 26438389.
    Citations:    Fields:    Translation:Humans
  28. MacGregor CA, Karimi D, Azarbarzin A, Moussavi Z. Statistical analysis of tracheal breath sounds during wakefulness for screening obstructive sleep apnea. Annu Int Conf IEEE Eng Med Biol Soc. 2013; 2013:4549-52. PMID: 24110746.
    Citations:    Fields:    Translation:Humans
  29. Karimi D, Henry J, Mann DD. Effect of using GPS autosteer guidance systems on the eye-glance behavior and posture of tractor operators. J Agric Saf Health. 2012 Oct; 18(4):309-18. PMID: 23189517.
    Citations: 1     Fields:    Translation:Humans
  30. Shams E, Karimi D, Moussavi Z. Bispectral analysis of tracheal breath sounds for Obstructive Sleep Apnea. Annu Int Conf IEEE Eng Med Biol Soc. 2012; 2012:37-40. PMID: 23365826.
    Citations:    Fields:    Translation:HumansCTClinical Trials
  31. Karimi D, Mondor TA, Mann DD. Application of auditory signals to the operation of an agricultural vehicle: results of pilot testing. J Agric Saf Health. 2008 Jan; 14(1):71-8. PMID: 18376536.
    Citations:    Fields:    Translation:HumansPHPublic Health
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.