Harvard Catalyst Profiles

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Davood Karimi, Ph.D.

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Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Karimi D, Warfield SK, Gholipour A. Transfer learning in medical image segmentation: New insights from analysis of the dynamics of model parameters and learned representations. Artif Intell Med. 2021 Jun; 116:102078. PMID: 34020754.
    Citations:    Fields:    
  2. Dou H, Karimi D, Rollins CK, Ortinau CM, Vasung L, Velasco-Annis C, Ouaalam A, Yang X, Ni D, Gholipour A. A Deep Attentive Convolutional Neural Network for Automatic Cortical Plate Segmentation in Fetal MRI. IEEE Trans Med Imaging. 2021 Apr; 40(4):1123-1133. PMID: 33351755.
    Citations: 1     Fields:    
  3. Karimi D, Dou H, Warfield SK, Gholipour A. Deep learning with noisy labels: Exploring techniques and remedies in medical image analysis. Med Image Anal. 2020 10; 65:101759. PMID: 32623277.
    Citations: 9     Fields:    
  4. Karimi D, Peters JM, Ouaalam A, Prabhu SP, Sahin M, Krueger DA, Kolevzon A, Eng C, Warfield SK, Gholipour A. LEARNING TO DETECT BRAIN LESIONS FROM NOISY ANNOTATIONS. Proc IEEE Int Symp Biomed Imaging. 2020 Apr; 2020:1910-1914. PMID: 32879655.
    Citations:    
  5. Golshan M, Karimi D, Mahdavi S, Lobo J, Peacock M, Salcudean SE, Spadinger I. Automatic detection of brachytherapy seeds in 3D ultrasound images using a convolutional neural network. Phys Med Biol. 2020 02 05; 65(3):035016. PMID: 31860899.
    Citations: 1     Fields:    Translation:Humans
  6. Karimi D, Nir G, Fazli L, Black PC, Goldenberg L, Salcudean SE. Deep Learning-Based Gleason Grading of Prostate Cancer From Histopathology Images-Role of Multiscale Decision Aggregation and Data Augmentation. IEEE J Biomed Health Inform. 2020 05; 24(5):1413-1426. PMID: 31567104.
    Citations: 6     Fields:    Translation:Humans
  7. Karimi D, Salcudean SE. Reducing the Hausdorff Distance in Medical Image Segmentation With Convolutional Neural Networks. IEEE Trans Med Imaging. 2020 02; 39(2):499-513. PMID: 31329113.
    Citations: 8     Fields:    Translation:Humans
  8. Karimi D, Zeng Q, Mathur P, Avinash A, Mahdavi S, Spadinger I, Abolmaesumi P, Salcudean SE. Accurate and robust deep learning-based segmentation of the prostate clinical target volume in ultrasound images. Med Image Anal. 2019 10; 57:186-196. PMID: 31325722.
    Citations: 7     Fields:    Translation:Humans
  9. Nir G, Karimi D, Goldenberg SL, Fazli L, Skinnider BF, Tavassoli P, Turbin D, Villamil CF, Wang G, Thompson DJS, Black PC, Salcudean SE. Comparison of Artificial Intelligence Techniques to Evaluate Performance of a Classifier for Automatic Grading of Prostate Cancer From Digitized Histopathologic Images. JAMA Netw Open. 2019 03 01; 2(3):e190442. PMID: 30848813.
    Citations: 9     Fields:    Translation:Humans
  10. Nir G, Hor S, Karimi D, Fazli L, Skinnider BF, Tavassoli P, Turbin D, Villamil CF, Wang G, Wilson RS, Iczkowski KA, Lucia MS, Black PC, Abolmaesumi P, Goldenberg SL, Salcudean SE. Automatic grading of prostate cancer in digitized histopathology images: Learning from multiple experts. Med Image Anal. 2018 12; 50:167-180. PMID: 30340027.
    Citations: 14     Fields:    Translation:Humans
  11. Karimi D, Samei G, Kesch C, Nir G, Salcudean SE. Prostate segmentation in MRI using a convolutional neural network architecture and training strategy based on statistical shape models. Int J Comput Assist Radiol Surg. 2018 Aug; 13(8):1211-1219. PMID: 29766373.
    Citations: 6     Fields:    Translation:Humans
  12. Zeng Q, Samei G, Karimi D, Kesch C, Mahdavi SS, Abolmaesumi P, Salcudean SE. Prostate segmentation in transrectal ultrasound using magnetic resonance imaging priors. Int J Comput Assist Radiol Surg. 2018 Jun; 13(6):749-757. PMID: 29589259.
    Citations: 3     Fields:    Translation:Humans
  13. Karimi D, Ward RK. Patch-based models and algorithms for image processing: a review of the basic principles and methods, and their application in computed tomography. Int J Comput Assist Radiol Surg. 2016 Oct; 11(10):1765-77. PMID: 27287761.
    Citations: 1     Fields:    Translation:Humans
  14. Karimi D, Ward RK. Sinogram denoising via simultaneous sparse representation in learned dictionaries. Phys Med Biol. 2016 May 07; 61(9):3536-53. PMID: 27055224.
    Citations: 1     Fields:    Translation:HumansAnimals
  15. Karimi D, Ward R. Reducing streak artifacts in computed tomography via sparse representation in coupled dictionaries. Med Phys. 2016 Mar; 43(3):1473-86. PMID: 26936731.
    Citations: 2     Fields:    Translation:Humans
  16. Karimi D, Deman P, Ward R, Ford N. A sinogram denoising algorithm for low-dose computed tomography. BMC Med Imaging. 2016 Jan 22; 16:11. PMID: 26800667.
    Citations:    Fields:    Translation:Humans
  17. Karimi D, Ward R. A denoising algorithm for projection measurements in cone-beam computed tomography. Comput Biol Med. 2016 Feb 01; 69:71-82. PMID: 26735188.
    Citations:    Fields:    Translation:Humans
  18. Karimi D, Ward R. On the computational implementation of forward and back-projection operations for cone-beam computed tomography. Med Biol Eng Comput. 2016 Aug; 54(8):1193-204. PMID: 26438389.
    Citations:    Fields:    Translation:Humans
  19. MacGregor CA, Karimi D, Azarbarzin A, Moussavi Z. Statistical analysis of tracheal breath sounds during wakefulness for screening obstructive sleep apnea. Annu Int Conf IEEE Eng Med Biol Soc. 2013; 2013:4549-52. PMID: 24110746.
    Citations:    Translation:Humans
  20. Karimi D, Henry J, Mann DD. Effect of using GPS autosteer guidance systems on the eye-glance behavior and posture of tractor operators. J Agric Saf Health. 2012 Oct; 18(4):309-18. PMID: 23189517.
    Citations: 1     Fields:    Translation:Humans
  21. Shams E, Karimi D, Moussavi Z. Bispectral analysis of tracheal breath sounds for Obstructive Sleep Apnea. Annu Int Conf IEEE Eng Med Biol Soc. 2012; 2012:37-40. PMID: 23365826.
    Citations:    Translation:HumansCTClinical Trials
  22. Karimi D, Mondor TA, Mann DD. Application of auditory signals to the operation of an agricultural vehicle: results of pilot testing. J Agric Saf Health. 2008 Jan; 14(1):71-8. PMID: 18376536.
    Citations:    Fields:    Translation:HumansPHPublic Health
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.