Harvard Catalyst Profiles

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Faisal Mahmood, Ph.D.

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The research activities and funding listed below are automatically derived from NIH ExPORTER and other sources, which might result in incorrect or missing items. Faculty can login to make corrections and additions.
  1. R35GM138216 (MAHMOOD, FAISAL) Sep 15, 2020 - Jul 31, 2025
    Interpretable Deep Learning Algorithms for Pathology Image Analysis
    Role: Principal Investigator

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Chen RJ, Lu MY, Wang J, Williamson DFK, Rodig SJ, Lindeman NI, Mahmood F. Pathomic Fusion: An Integrated Framework for Fusing Histopathology and Genomic Features for Cancer Diagnosis and Prognosis. IEEE Trans Med Imaging. 2022 Apr; 41(4):757-770. PMID: 32881682.
    Citations: 14     Fields:    
  2. Lipkova J, Chen TY, Lu MY, Chen RJ, Shady M, Williams M, Wang J, Noor Z, Mitchell RN, Turan M, Coskun G, Yilmaz F, Demir D, Nart D, Basak K, Turhan N, Ozkara S, Banz Y, Odening KE, Mahmood F. Deep learning-enabled assessment of cardiac allograft rejection from endomyocardial biopsies. Nat Med. 2022 Mar; 28(3):575-582. PMID: 35314822.
    Citations:    Fields:    
  3. Lu MY, Chen RJ, Kong D, Lipkova J, Singh R, Williamson DFK, Chen TY, Mahmood F. Federated learning for computational pathology on gigapixel whole slide images. Med Image Anal. 2022 02; 76:102298. PMID: 34911013.
    Citations: 1     Fields:    
  4. Lu MY, Sater HA, Mahmood F. Multiplex computational pathology for treatment response predication. Cancer Cell. 2021 08 09; 39(8):1053-1055. PMID: 34375608.
    Citations:    Fields:    Translation:Humans
  5. Chen RJ, Lu MY, Chen TY, Williamson DFK, Mahmood F. Synthetic data in machine learning for medicine and healthcare. Nat Biomed Eng. 2021 06; 5(6):493-497. PMID: 34131324.
    Citations: 3     Fields:    Translation:Humans
  6. Lu MY, Chen TY, Williamson DFK, Zhao M, Shady M, Lipkova J, Mahmood F. AI-based pathology predicts origins for cancers of unknown primary. Nature. 2021 06; 594(7861):106-110. PMID: 33953404.
    Citations: 14     Fields:    Translation:Humans
  7. Ozyoruk KB, Gokceler GI, Bobrow TL, Coskun G, Incetan K, Almalioglu Y, Mahmood F, Curto E, Perdigoto L, Oliveira M, Sahin H, Araujo H, Alexandrino H, Durr NJ, Gilbert HB, Turan M. EndoSLAM dataset and an unsupervised monocular visual odometry and depth estimation approach for endoscopic videos. Med Image Anal. 2021 07; 71:102058. PMID: 33930829.
    Citations: 2     Fields:    Translation:Animals
  8. Speight R, Tyyger M, Schmidt MA, Liney G, Johnstone R, Eccles CL, Dubec M, George B, Henry A, Herbert T, Nyholm T, Mahmood F, Korhonen J, Sims R, Tijssen RHN, Vanhoutte F, Busoni S, Lacornerie T, McCallum H. IPEM Topical Report: an international IPEM survey of MRI use for external beam radiotherapy treatment planning. Phys Med Biol. 2021 03 23; 66(7). PMID: 33631729.
    Citations: 3     Fields:    
  9. Lu MY, Williamson DFK, Chen TY, Chen RJ, Barbieri M, Mahmood F. Data-efficient and weakly supervised computational pathology on whole-slide images. Nat Biomed Eng. 2021 06; 5(6):555-570. PMID: 33649564.
    Citations: 9     Fields:    Translation:Humans
  10. Bernchou U, Christiansen RL, Bertelsen A, Tilly D, Riis HL, Jensen HR, Mahmood F, Hansen CR, Hansen VN, Schytte T, Brink C. End-to-end validation of the geometric dose delivery performance of MR linac adaptive radiotherapy. Phys Med Biol. 2021 02 12; 66(4):045034. PMID: 33321475.
    Citations:    Fields:    Translation:Humans
  11. Incetan K, Celik IO, Obeid A, Gokceler GI, Ozyoruk KB, Almalioglu Y, Chen RJ, Mahmood F, Gilbert H, Durr NJ, Turan M. VR-Caps: A Virtual Environment for Capsule Endoscopy. Med Image Anal. 2021 05; 70:101990. PMID: 33609920.
    Citations: 3     Fields:    Translation:Humans
  12. Almalioglu Y, Bengisu Ozyoruk K, Gokce A, Incetan K, Irem Gokceler G, Ali Simsek M, Ararat K, Chen RJ, Durr NJ, Mahmood F, Turan M. EndoL2H: Deep Super-Resolution for Capsule Endoscopy. IEEE Trans Med Imaging. 2020 12; 39(12):4297-4309. PMID: 32795966.
    Citations: 3     Fields:    
  13. Mahmood F, Borders D, Chen RJ, Mckay GN, Salimian KJ, Baras A, Durr NJ. Deep Adversarial Training for Multi-Organ Nuclei Segmentation in Histopathology Images. IEEE Trans Med Imaging. 2020 11; 39(11):3257-3267. PMID: 31283474.
    Citations: 21     Fields:    Translation:Humans
  14. Mahmood F, Zhang H, Lin J, Wan C. Laser-Induced Graphene Derived from Kraft Lignin for Flexible Supercapacitors. ACS Omega. 2020 Jun 23; 5(24):14611-14618. PMID: 32596598.
    Citations: 3     
  15. Chen MT, Mahmood F, Sweer JA, Durr NJ. GANPOP: Generative Adversarial Network Prediction of Optical Properties From Single Snapshot Wide-Field Images. IEEE Trans Med Imaging. 2020 06; 39(6):1988-1999. PMID: 31899416.
    Citations: 12     Fields:    Translation:Animals
  16. Bobrow TL, Mahmood F, Inserni M, Durr NJ. DeepLSR: a deep learning approach for laser speckle reduction. Biomed Opt Express. 2019 Jun 01; 10(6):2869-2882. PMID: 31259057.
    Citations: 5     
  17. Mahmood, F., Borders, D., Chen, R., McKay, G.N., Salimian, K.J., Baras, A. and Durr, N.J., . Deep adversarial training for multi-organ nuclei segmentation in histopathology images. IEEE Transactions on Medical Imaging. 2019. View Publication.
  18. Bobrow, T.L., Mahmood, F., Inserni, M. and Durr, N.J.,. DeepLSR: Deep learning approach for laser speckle reduction. Biomedical Optics Express. 2019. View Publication.
  19. McKay GN, Mahmood F, Durr NJ. Large dynamic range autorefraction with a low-cost diffuser wavefront sensor. Biomed Opt Express. 2019 Apr 01; 10(4):1718-1735. PMID: 31061764.
    Citations: 3     
  20. McKay, G.N., Mahmood, F. and Durr, N.J. Large dynamic range autorefraction with a low-cost diffuser wavefront sensor. Biomedical Optics Express. 2019; 10(4):1718-1735. View Publication.
  21. Mahmood, F., Toots, M., Öfverstedt, L.G.W. and Skoglund, B.U. 2D discrete Fourier transform with simultaneous edge artifact removal for real-time applications US Patent US20180204313A1. 2018. View Publication.
  22. Mahmood F, Chen R, Sudarsky S, Yu D, Durr NJ. Deep learning with cinematic rendering: fine-tuning deep neural networks using photorealistic medical images. Phys Med Biol. 2018 09 13; 63(18):185012. PMID: 30113015.
    Citations: 6     Fields:    Translation:HumansAnimals
  23. Mahmood F, Durr NJ. Deep learning and conditional random fields-based depth estimation and topographical reconstruction from conventional endoscopy. Med Image Anal. 2018 08; 48:230-243. PMID: 29990688.
    Citations: 20     Fields:    Translation:Animals
  24. Mahmood F, Chen R, Durr NJ. Unsupervised Reverse Domain Adaptation for Synthetic Medical Images via Adversarial Training. IEEE Trans Med Imaging. 2018 12; 37(12):2572-2581. PMID: 29993538.
    Citations: 29     Fields:    Translation:Humans
  25. Mahmood, F., Shahid, N., Skoglund, U. and Vandergheynst, P. Adaptive Graph-Based Total Variation for Tomographic Reconstructions. IEEE Signal Processing Letters. 2018; 25(5):700-704. View Publication.
  26. Mahmood, F., Öfverstedt, L.G., Toots, M., Wilken, G. and Skoglund, U. An Extended Field-Based Method for Noise Removal From Electron Tomographic Reconstructions. IEEE Access. 2018; 6:17326-17339. View Publication.
  27. Mahmood, F. and Durr, N.J., . Topographical reconstructions from monocular optical colonoscopy images via deep learning. 15th IEEE International Symposium on Biomedical Imaging. 2018; 216-219. View Publication.
  28. Mahmood, F., Toots, M., Öfverstedt, L.G. and Skoglund, U. Algorithm and Architecture Optimization for 2D Discrete Fourier Transforms with Simultaneous Edge Artifact Removal. International Journal of Reconfigurable Computing. 2017.
  29. Mahmood F, Johannesen HH, Geertsen P, Hansen RH. Repeated diffusion MRI reveals earliest time point for stratification of radiotherapy response in brain metastases. Phys Med Biol. 2017 04 21; 62(8):2990-3002. PMID: 28306548.
    Citations: 14     Fields:    Translation:Humans
  30. Mahmood, F., Öfverstedt, L.G.W. and Skoglund, B.U.,. Extended field iterative reconstruction technique (EFIRT) for correlated noise removal. US Patent US9594032B2. 2017. View Publication.
  31. Mahmood F. Algorithmic and Architectural Developments for Cryo-Electron Tomography. 2017. View Publication.
  32. Mahmood F, Shahid N, Vandergheynst P, Skoglund U. Graph-based sinogram denoising for tomographic reconstructions. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:3961-3664. PMID: 28269152.
    Citations:    Fields:    Translation:Humans
  33. Mohan DM, Kumar P, Mahmood F, Wong KF, Agrawal A, Elgendi M, Shukla R, Ang N, Ching A, Dauwels J, Chan AH. Effect of Subliminal Lexical Priming on the Subjective Perception of Images: A Machine Learning Approach. PLoS One. 2016; 11(2):e0148332. PMID: 26866807.
    Citations: 3     Fields:    Translation:Humans
  34. Mahmood, F., Toots, M., Öfverstedt, L.G. and Skoglund, U., . 2D discrete Fourier transform with simultaneous edge artifact removal for real-time applications. IEEE International Conference on Field Programmable Technology (FPT). 2015; 236-239. View Publication.
  35. Kumar P, Mahmood F, Mohan DM, Wong K, Agrawal A, Elgendi M, Shukla R, Dauwels J, Chan AH. On the effect of subliminal priming on subjective perception of images: a machine learning approach. Annu Int Conf IEEE Eng Med Biol Soc. 2014; 2014:5438-41. PMID: 25571224.
    Citations: 2     Fields:    Translation:HumansCells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.