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Kelsey N Thompson, Ph.D.


Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Thompson KN, Oulhote Y, Weihe P, Wilkinson JE, Ma S, Zhong H, Li J, Kristiansen K, Huttenhower C, Grandjean P. Effects of Lifetime Exposures to Environmental Contaminants on the Adult Gut Microbiome. Environ Sci Technol. 2022 Nov 17. PMID: 36394280.
    Citations:    Fields:    
  2. Zhang Y, Bhosle A, Bae S, McIver LJ, Pishchany G, Accorsi EK, Thompson KN, Arze C, Wang Y, Subramanian A, Kearney SM, Pawluk A, Plichta DR, Rahnavard A, Shafquat A, Xavier RJ, Vlamakis H, Garrett WS, Krueger A, Huttenhower C, Franzosa EA. Discovery of bioactive microbial gene products in inflammatory bowel disease. Nature. 2022 06; 606(7915):754-760. PMID: 35614211.
    Citations:    Fields:    Translation:HumansCells
  3. Mallick H, Rahnavard A, McIver LJ, Ma S, Zhang Y, Nguyen LH, Tickle TL, Weingart G, Ren B, Schwager EH, Chatterjee S, Thompson KN, Wilkinson JE, Subramanian A, Lu Y, Waldron L, Paulson JN, Franzosa EA, Bravo HC, Huttenhower C. Multivariable association discovery in population-scale meta-omics studies. PLoS Comput Biol. 2021 11; 17(11):e1009442. PMID: 34784344; PMCID: PMC8714082.
    Citations: 80     Fields:    Translation:Humans
  4. Sikavi DR, Nguyen LH, Haruki K, Ugai T, Ma W, Wang DD, Thompson KN, Yan Y, Branck T, Wilkinson JE, Akimoto N, Zhong R, Lau MC, Mima K, Kosumi K, Morikawa T, Rimm EB, Garrett WS, Izard J, Cao Y, Song M, Huttenhower C, Ogino S, Chan AT. The Sulfur Microbial Diet and Risk of Colorectal Cancer by Molecular Subtypes and Intratumoral Microbial Species in Adult Men. Clin Transl Gastroenterol. 2021 08 01; 12(8):e00338. PMID: 34333506; PMCID: PMC8323793.
    Citations:    Fields:    Translation:HumansCells
  5. Zhang Y, Thompson KN, Huttenhower C, Franzosa EA. Statistical approaches for differential expression analysis in metatranscriptomics. Bioinformatics. 2021 07 12; 37(Suppl_1):i34-i41. PMID: 34252963; PMCID: PMC8275336.
    Citations: 5     Fields:    
  6. Zhang Y, Thompson KN, Branck T, Nguyen LH, Franzosa EA, Huttenhower C. Metatranscriptomics for the Human Microbiome and Microbial Community Functional Profiling. Annu Rev Biomed Data Sci. 2021 07 20; 4:279-311. PMID: 34465175.
    Citations: 8     Fields:    Translation:HumansCells
  7. Peterson EM, Thompson KN, Shaw KR, Tomlinson C, Longing SD, Smith PN. Use of nest bundles to monitor agrochemical exposure and effects among cavity nesting pollinators. Environ Pollut. 2021 Oct 01; 286:117142. PMID: 33965805.
    Citations:    Fields:    Translation:Animals
  8. Young C, Wood HM, Fuentes Balaguer A, Bottomley D, Gallop N, Wilkinson L, Benton SC, Brealey M, John C, Burtonwood C, Thompson KN, Yan Y, Barrett JH, Morris EJA, Huttenhower C, Quirke P. Microbiome Analysis of More Than 2,000 NHS Bowel Cancer Screening Programme Samples Shows the Potential to Improve Screening Accuracy. Clin Cancer Res. 2021 04 15; 27(8):2246-2254. PMID: 33658300; PMCID: PMC7610626.
    Citations: 1     Fields:    Translation:Humans
  9. Young C, Wood HM, Seshadri RA, Van Nang P, Vaccaro C, Melendez LC, Bose M, Van Doi M, Piñero TA, Valladares CT, Arguero J, Balaguer AF, Thompson KN, Yan Y, Huttenhower C, Quirke P. The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries. Genome Med. 2021 02 16; 13(1):27. PMID: 33593386; PMCID: PMC7887780.
    Citations: 3     Fields:    Translation:Humans
  10. Wang Y, Yan Y, Thompson KN, Bae S, Accorsi EK, Zhang Y, Shen J, Vlamakis H, Hartmann EM, Huttenhower C. Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach. Microbiome. 2021 01 21; 9(1):17. PMID: 33478576; PMCID: PMC7819323.
    Citations: 5     Fields:    Translation:HumansAnimalsCells
  11. Awoyemi OM, Subbiah S, Velazquez A, Thompson KN, Peace AL, Mayer GD. Nitrate-N-mediated toxicological responses of Scenedesmus acutus and Daphnia pulex to cadmium, arsenic and their binary mixture (Cd/Asmix) at environmentally relevant concentrations. J Hazard Mater. 2020 12 05; 400:123189. PMID: 32947745.
    Citations:    Fields:    Translation:Animals
  12. Awoyemi OM, Subbiah S, Thompson KN, Velazquez A, Peace A, Mayer GD. Trophic-Level Interactive Effects of Phosphorus Availability on the Toxicities of Cadmium, Arsenic, and Their Binary Mixture in Media-Exposed Scenedesmus acutus and Media and Dietary-Exposed Daphnia pulex. Environ Sci Technol. 2020 05 05; 54(9):5651-5666. PMID: 32255616.
    Citations: 1     Fields:    Translation:Animals
  13. Qin Q, Xie H, Wise SS, Browning CL, Thompson KN, Holmes AL, Wise JP. Homologous recombination repair signaling in chemical carcinogenesis: prolonged particulate hexavalent chromium exposure suppresses the Rad51 response in human lung cells. Toxicol Sci. 2014 Nov; 142(1):117-25. PMID: 25173789.
    Citations: 15     Fields:    Translation:HumansCells
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.