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Yue Zhuo, Ph.D.

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Biography
University of Illinois at Urbana-Champaign, Urbana-Champaign, ILPhD2015Bioengineering
Exalt Diagnostics Inc., Urbana, IL06/2015Nanophotonics sensing and imaging
Beckman Institute Postdoctoral Fellow, The Beckman Institute for Advanced Science and Technology10/2018Nanophotonics sensing and imaging
Deutsch Research Fellow, Massachusetts General Hospital, Harvard Medical School10/2019Cell lasers and bio-laser particles
NIH T32 Research Fellow, Massachusetts General Hospital, Harvard Medical SchoolpresentBiomedical sensing and imaging
2010
Conference Travel Award from Graduate Collage (UIUC)
2010
Educational stipend (ISMRM-ESMRMB, Sweden)
2010
"Double Vision Challenge Award" (Top four) in competition of Recon Challenge (ISMRM-ESMRMB, Sweden)
2011 - 2012
Beckman Graduate Fellowship (Beckman Institute)
2013 - 2014
Yee Memorial Fund Fellowship
2015
Poster Award (First Place) (CMMB IGERT and M-CNTC))
2017
Innovation Award (Second Place) (OSA)
2017
Microscopy & Microanalysis (M&M) Postdoctoral Scholar Award
2016 - 2018
Beckman Postdoctoral Fellowship (Beckman Institute)
2018 - 2019
Thomas F. Deutsch Research Fellowship (OSA, MGH and Harvard)
2020 - 2021
NIH T32 Research Fellowship (NIH, MGH and Harvard)

Overview

Bibliographic
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
  1. Ma C, Han PK, Zhuo Y, Djebra Y, Marin T, Fakhri GE. Joint spectral quantification of MR spectroscopic imaging using linear tangent space alignment-based manifold learning. Magn Reson Med. 2022 Nov 20. PMID: 36404676.
    Citations:    Fields:    
  2. Adee M, Zhong H, Reipold EI, Zhuo Y, Shilton S, Chhatwal J. Cost-Effectiveness of a Core Antigen-Based Rapid Diagnostic Test for Hepatitis C. Value Health. 2022 07; 25(7):1107-1115. PMID: 35272954.
    Citations:    Fields:    Translation:HumansCells
  3. Adee M, Zhuo Y, Zhong H, Zhan T, Aggarwal R, Shilton S, Chhatwal J. Author Correction: Assessing cost-effectiveness of hepatitis C testing pathways in Georgia using the Hep C Testing Calculator. Sci Rep. 2022 Feb 17; 12(1):3101. PMID: 35177757; PMCID: PMC8854413.
    Citations:    Fields:    
  4. Marin T, Han PK, Zhuo Y, Djebra Y, Liu F, El Fakhri G, Ma C. Proc. ISMRM. Three-dimensional cardiac T1 mapping using subspace and sparsity constrained direct estimation. 2021.
  5. Han PK, Marin T, Djebra Y, Landes V, Zhuo Y, El Fakhri G, Ma C. Free-breathing 3D cardiac T1 mapping with transmit B1 correction at 3T. Magn Reson Med. 2022 04; 87(4):1832-1845. PMID: 34812547; PMCID: PMC8810588.
    Citations:    Fields:    Translation:Humans
  6. Marin T, Zhuo Y, Lahoud RM, Tian F, Ma X, Xing F, Moteabbed M, Liu X, Grogg K, Shusharina N, Woo J, Lim R, Ma C, Chen YE, El Fakhri G. Deep learning-based GTV contouring modeling inter- and intra- observer variability in sarcomas. Radiother Oncol. 2022 02; 167:269-276. PMID: 34808228; PMCID: PMC8934266.
    Citations: 1     Fields:    Translation:Humans
  7. Dannenberg PH, Wang J, Zhuo Y, Cho S, Kim KH, Yun SH. Droplet microfluidic generation of a million optical microparticle barcodes. Opt Express. 2021 Nov 08; 29(23):38109-38118. PMID: 34808870; PMCID: PMC8687102.
    Citations:    Fields:    
  8. Adee M, Zhuo Y, Zhong H, Zhan T, Aggarwal R, Shilton S, Chhatwal J. Assessing cost-effectiveness of hepatitis C testing pathways in Georgia using the Hep C Testing Calculator. Sci Rep. 2021 11 01; 11(1):21382. PMID: 34725356; PMCID: PMC8560949.
    Citations:    Fields:    Translation:HumansCellsPHPublic Health
  9. Tang SJ, Dannenberg PH, Liapis AC, Martino N, Zhuo Y, Xiao YF, Yun SH. Author Correction: Laser particles with omnidirectional emission for cell tracking. Light Sci Appl. 2021 Feb 26; 10(1):43. PMID: 33637671; PMCID: PMC7910486.
    Citations:    
  10. Tang SJ, Dannenberg PH, Liapis AC, Martino N, Zhuo Y, Xiao YF, Yun SH. Laser particles with omnidirectional emission for cell tracking. Light Sci Appl. 2021 Jan 25; 10(1):23. PMID: 33495436; PMCID: PMC7835369.
    Citations: 8     
  11. Lu T, Marin T, Zhuo Y, Chen Y-F, Ma C. IEEE International Symposium on Biomedical Imaging. Nonuniform Fast Fourier Transform on TPUs. 2021.
  12. Marin T, Djebra Y, Han PK, Landes V, Zhuo Y, Su K-H, El Fakhri G, Ma C. Proc. ISMRM. Comparison of deformable registration techniques for real-time MR-based motion correction in PET/MR. 2021.
  13. Lu T, Marin T, Zhuo Y, Chen Y-F, Ma C. arXiv:2006.14080. Accelerating MRI Reconstruction on TPUs. 2020. View Publication.
  14. Canales-Benavides A, Zhuo Y, Amitrano AM, Kim M, Hernandez-Aranda RI, Carney PS, Schnell M. Accessible quantitative phase imaging in confocal microscopy with sinusoidal-phase synthetic optical holography. Appl Opt. 2019 Feb 10; 58(5):A55-A64. PMID: 30873960.
    Citations: 2     Fields:    
  15. Cunningham BT, Zhuo Y, Harley BA, Choi JS, Marin T, Lu Y. Photonic Resonator Absorption Microscopy (PRAM) for Digital Resolution Biomolecular Diagnostics. 2019. View Publication.
  16. Cunningham BT, Zhuo Y, Harley BA, Choi JS, Marin T. Photonic Resonator Outcoupler Microscopy (PROM). 2019. View Publication.
  17. Zhuo Y, Hu H, Wang Y, Marin T, Lu M. Photonic crystal slab biosensors fabricated with helium ion lithography (HIL). Sensors and Actuators A: Physical. 2019; 297:111493. View Publication.
  18. Zhuo Y, Choi JS, Marin T, Yu H, Harley BA, Cunningham BT. Quantitative analysis of focal adhesion dynamics using photonic resonator outcoupler microscopy (PROM). Light Sci Appl. 2018; 7. PMID: 29963322; PMCID: PMC6020849.
    Citations: 6     
  19. Zhuo Y, Choi JS, Marin T, Yu H, Harley BA, Cunningham BT. Biomedical Engineering Society Annual Meeting. Stem Cell Adhesion Imaging with Photonic Resonator Outcoupler Microscopy (PROM). 2018.
  20. Zhuo Y, Choi JS, Marin T, Yu H, Harley BA, Cunningham BT. Frontiers in Optics. Photonic Resonator Outcoupler Microscopy (PROM) for Quantitative Monitoring of Stem Cell Focal Adhesion Area. 2018; JTu3A:119.
  21. Choi JS, Zhuo Y, Cunningham BT, Harley BA. Monitoring and Evaluation of Biomaterials and their Performance in vivo. Non-invasive optical imaging on photonic crystalsurface of stem cell differentiation in biomaterials. 2017; 195-207.
  22. Zhuo Y, Choi JS, Marin T, Yu H, Harley BA, Cunningham BT. Proceedings of Microscopy & Microanalysis. Label-free Imaging of Stem Cell Adhesion and Dynamic Tracking of Boundary Evolution Using Photonic Crystal Enhanced Microscopy (PCEM). 2017; 23:1142-3.
  23. Zhuo Y, Choi JS, Marin T, Yu H, Harley BA, Cunningham BT. Conference on Lasers and Electro-Optics (CLEO). Quantitative Label-free Imaging of Live-cell Adhesion Using Photonic Crystal Enhanced Microscopy (PCEM). 2017. View Publication.
  24. Zhuo Y, Choi JS, Marin T, Yu H, Harley BA, Cunningham BT. Optics in the Life Sciences Congress. Cell Adhesion Phenotype Library with Photonic Crystal Enhanced Microscopy. 2017; BoS2A7. View Publication.
  25. Zhuo Y, Choi JS, Marin T, Yu H, Harley BA, Cunningham BT. Quantitative Imaging of Cell Membrane-associated Effective Mass Density Using Photonic Crystal Enhanced Microscopy (PCEM). Prog Quantum Electron. 2016 Nov; 50:1-18. PMID: 28649149; PMCID: PMC5479321.
    Citations: 2     
  26. Zhuo Y, Cunningham BT. Label-Free Sensing. Label-Free Biosensor Imaging on Photonic Crystal Surfaces (Chpater 2). 2016; 31-55.
  27. Cunningham BT, Zhang M, Zhuo Y, Kwon L, Race C. Recent Advances in Biosensing With Photonic Crystal Surfaces: A Review. IEEE Sensors Journal. 2016; 10(16):3349-66. View Publication.
  28. Zhuo Y, Choi JS, Marin T, Yu H, Harley BA, Cunningham BT. International Engineering in Medicine and Biology Conference (EMBC). Photonic Crystal Enhanced Microscopy (PCEM) for Multimode Dynamic Quantitative Imaging of Cell Adhesion. 2016.
  29. Choi JS, Ilin Y, Zhuo Y, Kraft M, Cunningham BT, Harley BA. NIH-NIDDK Effects of Aging on Hematopoiesis Workshop. In vitro control of hematopoietic stem cell fate decisions and analysis in a bone marrow-inspired synthetic niche. 2016.
  30. Choi JS, Ilin Y, Zhuo Y, Cunningham BT, Kraft M, Harley BA. Frontiers in Bioengineering and Biotechnology. Tracing of individual hematopoietic stem cell specification events using Raman Spectroscopy and photonic crystal enhanced microscopy. 2016.
  31. Zhuo Y, Cunningham BT. Label-Free Biosensor Imaging on Photonic Crystal Surfaces. Sensors (Basel). 2015 Aug 28; 15(9):21613-35. PMID: 26343684.
    Citations: 11     Fields:    Translation:Cells
  32. Zhuo Y, Qian T, Wu Y, Seong J, Gong Y, Ma H, Wang Y, Lu S. Subcellular and Dynamic Coordination between Src Activity and Cell Protrusion in Microenvironment. Sci Rep. 2015 Aug 11; 5:12963. PMID: 26261043.
    Citations: 3     Fields:    Translation:HumansCells
  33. Cunningham BT, Zhang M, Zhuo Y, Kwon L, Race C. Special Issue on Selected Papers From The IEEE Sensors 2014 Conference. Review of Recent Advances in Biosensing with Photonic Crystal Surfaces. 2015.
  34. Cunningham BT, Chen W, Long KD, Zhuo Y, Choi JS, Harley BA. Conference on Lasers and Electro-Optics (CLEO). Photonic crystal enhanced microscopy. 2015.
  35. Zhuo Y, Choi JS, Yu H, Harley BA, Cunningham BT. Conference on Lasers and Electro-Optics (CLEO). Dynamic label-free imaging of live-cell adhesion using photonic crystal enhanced microscopy (PCEM). 2015.
  36. Zhuo Y, Choi JS, Yu H, Harley BA, Cunningham BT. The American Society of Mechanical Engineers -- NanoEngineering for Medicine and Biology (ASME-NEMB). Surface Attachment Profiling of Stem Cell Differentiation Using Photonic Crystal Enhanced Microscopy (PCEM). 2015.
  37. Choi JS, Ilin Y, Zhuo Y, Cunningham BT, Kraft M, Harley BA. Tissue Engineering Part A. Label-Free Analysis of Single Hematopoietic Stem and Progenitor Cells. 2015; 21:S237-8.
  38. Hu H, Zhuo Y, Oruc ME, Cunningham BT, King WP. Nanofluidic channels of arbitrary shapes fabricated by tip-based nanofabrication. Nanotechnology. 2014 Nov 14; 25(45):455301. PMID: 25327873.
    Citations: 8     Fields:    
  39. Zhuo Y, Hu H, Chen W, Lu M, Tian L, Yu H, Long KD, Chow E, King WP, Singamaneni S, Cunningham BT. Single nanoparticle detection using photonic crystal enhanced microscopy. Analyst. 2014 Mar 07; 139(5):1007-15. PMID: 24432353.
    Citations: 23     Fields:    Translation:Cells
  40. Choi JS, Ilin Y, Zhuo Y, Kraft M, Cunningham BT, Harley BA. Biomedical Engineering Society Annual Meeting. Single-Cell Approaches to Assess Hematopoietic Stem Cell Responses to Matrix Cues. 2014.
  41. Zhuo Y, Hu H, Chen W, Lu M, Tian L, Yu H, Long KD, Chow E, King WP, Singamaneni S, Cunningham BT. Conference on Lasers and Electro-Optics (CLEO). Detection of single nanoparticles using photonic crystal enhanced microscopy. 2014. View Publication.
  42. Zhuo Y, Tian L, Chen W, Yu H, Singamaneni S, Cunningham BT. Protein-protein binding detection with nanoparticle photonic crystal enhanced microscopy (NP-PCEM). Annu Int Conf IEEE Eng Med Biol Soc. 2014; 2014:2069-72. PMID: 25570391.
    Citations: 1     Fields:    Translation:AnimalsCells
  43. Liao X, Lu S, Wu Y, Xu W, Zhuo Y, Peng Q, Li B, Zhang L, Wang Y. The effect of differentiation induction on FAK and Src activity in live HMSCs visualized by FRET. PLoS One. 2013; 8(8):e72233. PMID: 24015220.
    Citations: 4     Fields:    Translation:HumansCells
  44. Chen W, Long KD, Lu M, Chaudhery V, Yu H, Choi JS, Polans J, Zhuo Y, Harley BA, Cunningham BT. Photonic crystal enhanced microscopy for imaging of live cell adhesion. Analyst. 2013 Oct 21; 138(20):5886-94. PMID: 23971078.
    Citations: 22     Fields:    Translation:AnimalsCells
  45. Sun J, Lu S, Ouyang M, Lin LJ, Zhuo Y, Liu B, Chien S, Neel BG, Wang Y. Antagonism between binding site affinity and conformational dynamics tunes alternative cis-interactions within Shp2. Nature Communications. 2013; 2037(4). View Publication.
  46. Liao X, Lu S, Zhuo Y, Winter C, Xu W, Wang Y. Visualization of Src and FAK activity during the differentiation process from HMSCs to osteoblasts. PLoS One. 2012; 7(8):e42709. PMID: 22900044.
    Citations: 12     Fields:    Translation:HumansCells
  47. Zhuo Y, Qian T, Lu S, Wang Y. BMES. Src Activity Dynamic Detection In The Initiation Of Tension-released Cell Migration. 2012.
  48. Sun J, Lu S, Ouyang M, Lin LJ, Zhuo Y, Liu B, Chan R, Chien S, Neel BG, Wang Y. ACS National Meeting Book of Abstracts. Circuit algorithm of tunable intramolecular interactions embedded within Shp2 revealed by FRET. 2012; 243.
  49. Liao X, Lu S, Zhuo Y, Winter C, Xu W, Li B, Wang Y. Bone Physiology, Biomaterial and the Effect of Mechanical/Physical Microenvironment on MSC Osteogenesis: A Tribute to Shu Chien's 80th Birthday. Cell Mol Bioeng. 2011 Dec; 4(4):579-590. PMID: 25580165; PMCID: PMC4288028.
    Citations: 3     
  50. Seong J, Ouyang M, Kim T, Sun J, Wen PC, Lu S, Zhuo Y, Llewellyn NM, Schlaepfer DD, Guan JL, Chien S, Wang Y. Detection of focal adhesion kinase activation at membrane microdomains by fluorescence resonance energy transfer. Nat Commun. 2011 Jul 26; 2:406. PMID: 21792185.
    Citations: 48     Fields:    Translation:AnimalsCells
  51. Wu XL, Zhuo Y, Gai J, Lam F, Fu M, Haldar JP, Hwu WM, Liang ZP, Sutton BP. Parallel Processing for Imaging Applications. Advanced MRI reconstruction toolbox with accelerating on GPU. 2011; 7872:241-50. View Publication.
  52. Wu XL, Gai J, Lam F, Fu M, Haldar JP, Zhuo Y, Liang ZP, Hwu WM, Sutton BP. The International Society for Magnetic Resonance in Medicine (ISMRM). Impatient MRI: Illinois Massively Parallel Acceleration Toolkit for Image reconstruction with ENhanced Throughput in MRI. 2011.
  53. Wu XL, Gai J, Lam F, Fu M, Haldar JP, Zhuo Y, Liang ZP, Hwu WM, Sutton BP. IEEE International Symposium on Biomedical Imaging: From Nano to Macro. Impatient MRI: Illinois Massively Parallel Acceleration Toolkit for image reconstruction with enhanced throughput in MRI. 2011; 69-72. View Publication.
  54. Zhuo Y, Wu XL, Haldar JP, Marin T, Hwu WM, Liang ZP, Sutton BP. GPU Computing Gems. Using GPUs to Accelerate Advanced MRI Reconstruction with Field Inhomogeneity Compensation. 2011; 709-722. View Publication.
  55. Zhuo Y, Wu XL, Haldar JP, Hwu WM, Liang ZP, Sutton BP. IEEE International Symposium on Biomedical Imaging: From Nano to Macro. Accelerating iterative field-compensated MR image reconstruction on GPUs. 2010; 820-3. View Publication.
  56. Zhuo Y, Wu XL, Haldar JP, Hwu WM, Liang ZP, Sutton BP. ISMRM. Multi-GPU Implementation for Iterative MR Image Reconstruction with Field Correction. 2010.
  57. Zhuo Y, Sutton BP. ISMRM. Susceptibility-induced BOLD Sensitivity Variation in Breath Hold Task. 2010.
  58. Zhuo Y, Sutton BP. OHBM. fMRI calibration using effective BOLD signals estimated from susceptibility-induced echo-time-shift. 2010.
  59. Zhuo Y, Wu XL, Haldar JP, Hwu WM, Liang ZP, Sutton BP. 3rd International Conference on Biomedical Engineering and Informatics. Sparse regularization in MRI iterative reconstruction using GPUs. 2010; 2:578-582. View Publication.
  60. Sutton BP, Zhuo Y. IEEE International Symposium on Biomedical Imaging: From Nano to Macro. Susceptibility, echo time shifts, and T2* considerations for functional magnetic resonance imaging. 2009; 710-3. View Publication.
  61. Zhuo Y, Sutton BP. Iterative image reconstruction model including susceptibility gradients combined with Z-shimming gradients in fMRI. Annu Int Conf IEEE Eng Med Biol Soc. 2009; 2009:5721-4. PMID: 19963915.
    Citations:    Fields:    Translation:Humans
  62. Zhuo Y, Sutton BP. Effect on BOLD sensitivity due to susceptibility-induced echo time shift in spiral-in based functional MRI. Annu Int Conf IEEE Eng Med Biol Soc. 2009; 2009:4449-52. PMID: 19964630.
    Citations:    Fields:    Translation:Humans
  63. Zhuo Y, Sutton BP. Conference: Biomedical Engineering Society (BMES). Field-inhomogeneity Compensated Image Reconstruction for MRI with Z-shim Gradient. 2008.
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Funded by the NIH National Center for Advancing Translational Sciences through its Clinical and Translational Science Awards Program, grant number UL1TR002541.